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Impact of small RNAs in retrograde signalling pathways in Arabidopsis thaliana
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/meth.2001.1262openalex-snapshot
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
inferredcites →https://doi.org/10.1007/978-0-387-98141-3openalex-snapshot
ggplot2: Elegant Graphics for Data Analysis
inferredcites →https://doi.org/10.1016/0092-8674(93)90459-4openalex-snapshot
Signal transduction mutants of arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development
inferredcites →https://doi.org/10.1016/j.bbabio.2016.03.017openalex-snapshot
Retrograde signaling: Organelles go networking
inferredcites →https://doi.org/10.1016/j.cell.2005.11.035openalex-snapshot
Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis
inferredcites →https://doi.org/10.1016/j.cell.2008.09.035openalex-snapshot
Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes
inferredcites →https://doi.org/10.1016/j.cell.2009.01.046openalex-snapshot
Origin, Biogenesis, and Activity of Plant MicroRNAs
inferredcites →https://doi.org/10.1016/j.cell.2009.12.023openalex-snapshot
Transcriptional Control of Gene Expression by MicroRNAs
inferredcites →https://doi.org/10.1016/j.cub.2011.04.004openalex-snapshot
Heme Synthesis by Plastid Ferrochelatase I Regulates Nuclear Gene Expression in Plants
inferredcites →https://doi.org/10.1016/j.devcel.2018.11.046openalex-snapshot
Chloroplast-to-Nucleus Signaling Regulates MicroRNA Biogenesis in Arabidopsis
inferredcites →https://doi.org/10.1016/j.jplph.2010.09.008openalex-snapshot
Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/j.mib.2014.09.008openalex-snapshot
Endosymbiotic theory for organelle origins
inferredcites →https://doi.org/10.1016/j.molcel.2005.05.026openalex-snapshot
Regulation of Apoptosis by Alternative Pre-mRNA Splicing
inferredcites →https://doi.org/10.1016/j.tips.2006.09.001openalex-snapshot
The MATE proteins as fundamental transporters of metabolic and xenobiotic organic cations
inferredcites →https://doi.org/10.1016/j.tplants.2008.08.008openalex-snapshot
Plastid signalling to the nucleus and beyond
inferredcites →https://doi.org/10.1016/s0960-9822(02)01017-5openalex-snapshot
CARPEL FACTORY, a Dicer Homolog, and HEN1, a Novel Protein, Act in microRNA Metabolism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1016/s1016-8478(23)13130-xopenalex-snapshot
Small RNAs: Classification, Biogenesis, and Function
inferredcites →https://doi.org/10.1021/jf0106751openalex-snapshot
Bleaching Herbicide Norflurazon Inhibits Phytoene Desaturase by Competition with the Cofactors
inferredcites →https://doi.org/10.1038/cr.2011.22openalex-snapshot
Regulation of chromatin by histone modifications
inferredcites →https://doi.org/10.1038/nature01204openalex-snapshot
Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX
inferredcites →https://doi.org/10.1038/nature02873openalex-snapshot
Mechanisms of gene silencing by double-stranded RNA
inferredcites →https://doi.org/10.1038/nature08618openalex-snapshot
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/ng2079openalex-snapshot
Target mimicry provides a new mechanism for regulation of microRNA activity
inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1038/nrg3863openalex-snapshot
RNA-mediated epigenetic regulation of gene expression
inferredcites →https://doi.org/10.1038/sj.embor.7400857openalex-snapshot
Genome‐wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
inferredcites →https://doi.org/10.1073/pnas.182432999openalex-snapshot
Evolutionary analysis of Arabidopsis , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
inferredcites →https://doi.org/10.1073/pnas.221252798openalex-snapshot
FLU: A negative regulator of chlorophyll biosynthesis in Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.98.4.2053openalex-snapshot
Arabidopsis genomes uncoupled 5 ( GUN5 ) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/dnares/dsv008openalex-snapshot
Genome-wide view of natural antisense transcripts in Arabidopsis thaliana
inferredcites →https://doi.org/10.1093/jxb/erh183openalex-snapshot
The multi-protein family of Arabidopsis sulphotransferases and their relatives in other plant species
inferredcites →https://doi.org/10.1093/mp/sst020openalex-snapshot
1O2-Mediated and EXECUTER-Dependent Retrograde Plastid-to-Nucleus Signaling in Norflurazon-Treated Seedlings of Arabidopsis thaliana
inferredcites →https://doi.org/10.1093/nar/gkn617openalex-snapshot
NRED: a database of long noncoding RNA expression
inferredcites →https://doi.org/10.1093/nar/gkn923openalex-snapshot
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
inferredcites →https://doi.org/10.1093/nar/gkw343openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
inferredcites →https://doi.org/10.1093/nar/gky316openalex-snapshot
psRNATarget: a plant small RNA target analysis server (2017 release)
inferredcites →https://doi.org/10.1098/rstb.2002.1180openalex-snapshot
Coordination of plastid and nuclear gene expression
inferredcites →https://doi.org/10.1104/pp.103.036996openalex-snapshot
CHLOROPLAST BIOGENESIS Genes Act Cell and Noncell Autonomously in Early Chloroplast Development
inferredcites →https://doi.org/10.1104/pp.106.079707openalex-snapshot
PHO2, MicroRNA399, and PHR1 Define a Phosphate-Signaling Pathway in Plants
inferredcites →https://doi.org/10.1104/pp.109.145987openalex-snapshot
Coordination of Plastid Protein Import and Nuclear Gene Expression by Plastid-to-Nucleus Retrograde Signaling
inferredcites →https://doi.org/10.1104/pp.15.02033openalex-snapshot
GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis
inferredcites →https://doi.org/10.1105/tpc.010035openalex-snapshot
Arabidopsis ALF5 , a Multidrug Efflux Transporter Gene Family Member, Confers Resistance to Toxins
inferredcites →https://doi.org/10.1105/tpc.014662openalex-snapshot
Rapid Induction of Distinct Stress Responses after the Release of Singlet Oxygen in Arabidopsis[W]
inferredcites →https://doi.org/10.1105/tpc.104.022608openalex-snapshot
Evidence for a Direct Link between Glutathione Biosynthesis and Stress Defense Gene Expression in Arabidopsis[W]
inferredcites →https://doi.org/10.1105/tpc.107.050062openalex-snapshot
Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway inArabidopsisReveals Dependency on miRNA- and tasiRNA-Directed Targeting
inferredcites →https://doi.org/10.1105/tpc.108.064311openalex-snapshot
Criteria for Annotation of Plant MicroRNAs
inferredcites →https://doi.org/10.1105/tpc.11.5.901openalex-snapshot
Plastid Translation Is Required for the Expression of Nuclear Photosynthesis Genes in the Dark and in Roots of the Pea lip1 Mutant
inferredcites →https://doi.org/10.1105/tpc.111.091033openalex-snapshot
Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.13.4.769openalex-snapshot
A Novel UDP-Glucose Transferase Is Part of the Callose Synthase Complex and Interacts with Phragmoplastin at the Forming Cell Plate
inferredcites →https://doi.org/10.1105/tpc.13.7.1625openalex-snapshot
Arabidopsis ALF5, a Multidrug Efflux Transporter Gene Family Member, Confers Resistance to Toxins
inferredcites →https://doi.org/10.1105/tpc.15.00852openalex-snapshot
Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
inferredcites →https://doi.org/10.1111/j.1365-3040.2005.01419.xopenalex-snapshot
A mutation affecting ASCORBATE PEROXIDASE 2 gene expression reveals a link between responses to high light and drought tolerance
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04216.xopenalex-snapshot
MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04425.xopenalex-snapshot
Analysis ofven3andven6reticulate mutants reveals the importance of arginine biosynthesis in Arabidopsis leaf development
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04454.xopenalex-snapshot
‘ happy on norflurazon ’ ( hon ) mutations implicate perturbance of plastid homeostasis with activating stress acclimatization and changing nuclear gene expression in norflurazon‐treated seedlings
inferredcites →https://doi.org/10.1111/j.1399-3054.2009.01320.xopenalex-snapshot
Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum
inferredcites →https://doi.org/10.1111/j.1432-1033.1984.tb08433.xopenalex-snapshot
Carotenoid‐deficient maize seedlings fail to accumulate light‐harvesting chlorophyll a/b binding protein (LHCP) mRNA
inferredcites →https://doi.org/10.1111/nph.13309openalex-snapshot
A gain‐of‐function mutation of plastidic invertase alters nuclear gene expression with sucrose treatment partially via GENOMES UNCOUPLED 1‐mediated signaling
inferredcites →https://doi.org/10.1111/tpj.12011openalex-snapshot
Sigma factor‐mediated plastid retrograde signals control nuclear gene expression
inferredcites →https://doi.org/10.1111/tpj.12169openalex-snapshot
Heat stress induction of mi R 398 triggers a regulatory loop that is critical for thermotolerance in A rabidopsis
inferredcites →https://doi.org/10.1126/science.1079978openalex-snapshot
GUN4, a Regulator of Chlorophyll Synthesis and Intracellular Signaling
inferredcites →https://doi.org/10.1126/science.1140516openalex-snapshot
Signals from chloroplasts converge to regulate nuclear gene expression.
inferredcites →https://doi.org/10.1126/science.1197349openalex-snapshot
Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA
inferredcites →https://doi.org/10.1146/annurev-arplant-050312-120043openalex-snapshot
Classification and Comparison of Small RNAs from Plants
inferredcites →https://doi.org/10.1146/annurev.cellbio.042308.113417openalex-snapshot
Small RNAs and Their Roles in Plant Development
inferredcites →https://doi.org/10.1186/1471-2199-9-6openalex-snapshot
Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis
inferredcites →https://doi.org/10.1186/gb-2012-13-3-r20openalex-snapshot
Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s12864-015-2333-3openalex-snapshot
Comparative transcriptional profiling of orange fruit in response to the biocontrol yeast Kloeckera apiculata and its active compounds
inferredcites →https://doi.org/10.1186/s12864-016-2559-8openalex-snapshot
Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
inferredcites →https://doi.org/10.1186/s12870-016-0895-0openalex-snapshot
The similar and different evolutionary trends of MATE family occurred between rice and Arabidopsis thaliana
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1261/rna.035279.112openalex-snapshot
ShortStack: Comprehensive annotation and quantification of small RNA genes
inferredcites →https://doi.org/10.1371/journal.pone.0050870openalex-snapshot
Expression-Based Functional Investigation of the Organ-Specific MicroRNAs in Arabidopsis
inferredcites →https://doi.org/10.1609/icwsm.v3i1.13937openalex-snapshot
Gephi: An Open Source Software for Exploring and Manipulating Networks
inferredcites →https://doi.org/10.25080/tcwv9851openalex-snapshot
Exploring Network Structure, Dynamics, and Function using NetworkX
inferredcites →https://doi.org/10.3389/fpls.2016.00168openalex-snapshot
Identification and Roles of Photosystem II Assembly, Stability, and Repair Factors in Arabidopsis
inferredcites →https://doi.org/10.3389/fpls.2017.00018openalex-snapshot
MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis
inferredcites →https://doi.org/10.3390/plants8030058openalex-snapshot
Profiling the Abiotic Stress Responsive microRNA Landscape of Arabidopsis thaliana
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.70675/1e7f039az4fbcz4424z96d7z3b9e446ff62aopenalex-snapshot
Analyse fonctionnelle de la protéine GUN1, de ses partenaires et de leurs rôles dans les signaux rétrogrades du chloroplaste
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