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Predicting agronomic traits and associated genomic regions in diverse rice landraces using marker stability

https://doi.org/10.1101/805002
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Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
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LASSO with cross-validation for genomic selection
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Random Forests
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Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight
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Threat to future global food security from climate change and ozone air pollution
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Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
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Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm
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Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
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Genome-wide efficient mixed-model analysis for association studies
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Genome-wide association studies of 14 agronomic traits in rice landraces
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Natural variation in GS5 plays an important role in regulating grain size and yield in rice
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Characterization of Epistatic Interaction of QTLs LH8 and EH3 Controlling Heading Date in Rice
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Hd6 , a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2
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Control of transposon activity by a histone H3K4 demethylase in rice
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Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice
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Rice Almanac: source book for the most important economic activity on earth
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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Epistasis for Three Grain Yield Components in Rice (Oryxa sativa L.)
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Identification of Heading Date Quantitative Trait Locus Hd6 and Characterization of Its Epistatic Interactions With Hd2 in Rice Using Advanced Backcross Progeny
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SNP-Seek database of SNPs derived from 3000 rice genomes
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RiceNet v2: an improved network prioritization server for rice genes
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How far from the SNP may the causative genes be?
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The 14-3-3 Protein GF14c Acts as a Negative Regulator of Flowering in Rice by Interacting with the Florigen Hd3a
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The Rice brassinosteroid-deficient dwarf2 Mutant, Defective in the Rice Homolog of Arabidopsis DIMINUTO/DWARF1, Is Rescued by the Endogenously Accumulated Alternative Bioactive Brassinosteroid, Dolichosterone
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Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield
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Stability Selection
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Regression Shrinkage and Selection Via the Lasso
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GS 6 , A Member of the GRAS Gene Family, Negatively Regulates Grain Size in Rice
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SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis
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Genome-wide association studies for agronomical traits in a world wide spring barley collection
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Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping
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Yield Trends Are Insufficient to Double Global Crop Production by 2050
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Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)
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Evolutionary History of GS3 , a Gene Conferring Grain Length in Rice
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Molecular Markers and Their Use in Marker‐Assisted Selection in Rice
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Genomic Selection for Crop Improvement
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R: A Language and Environment for Statistical Computing
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