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The role of environment, local adaptation and past climate fluctuation on the amount and distribution of genetic diversity in the teosinte in Mexico

https://doi.org/10.1101/820126

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1537-2197.1980.tb07730.xopenalex-snapshot

TAXONOMY OF ZEA (GRAMINEAE). I. A SUBGENERIC CLASSIFICATION WITH KEY TO TAXA

inferredcites →https://doi.org/10.1002/joc.1276openalex-snapshot

Very high resolution interpolated climate surfaces for global land areas

inferredcites →https://doi.org/10.1007/978-1-4899-3242-6openalex-snapshot

Generalized Linear Models

inferredcites →https://doi.org/10.1007/s001220100694openalex-snapshot

Microsatellites in Zea – variability, patterns of mutations, and use for evolutionary studies

inferredcites →https://doi.org/10.1007/s10681-010-0286-9openalex-snapshot

Microsatellite markers: an overview of the recent progress in plants

inferredcites →https://doi.org/10.1007/s12686-011-9548-7openalex-snapshot

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

inferredcites →https://doi.org/10.1016/0031-0182(90)90063-dopenalex-snapshot

The younger dryas cold spell—a quest for causes

inferredcites →https://doi.org/10.1016/j.ecolmodel.2005.03.026openalex-snapshot

Maximum entropy modeling of species geographic distributions

inferredcites →https://doi.org/10.1016/j.pbi.2006.01.013openalex-snapshot

Molecular and functional diversity of maize

inferredcites →https://doi.org/10.1016/j.tig.2012.08.004openalex-snapshot

Teosinte as a model system for population and ecological genomics

inferredcites →https://doi.org/10.1016/j.tree.2006.09.010openalex-snapshot

Ensemble forecasting of species distributions

inferredcites →https://doi.org/10.1017/cbo9781107415324.004openalex-snapshot

An Ichthyosaurus (Reptilia, Ichthyosauria) with gastric contents from Charmouth, England:first report of the genus from the Pliensbachian

inferredcites →https://doi.org/10.1038/hdy.2016.10openalex-snapshot

Maize diversity associated with social origin and environmental variation in Southern Mexico

inferredcites →https://doi.org/10.1046/j.0962-1083.2001.01436.xopenalex-snapshot

The estimation of population differentiation with microsatellite markers

inferredcites →https://doi.org/10.1073/pnas.91.8.3166openalex-snapshot

Mutational processes of simple-sequence repeat loci in human populations.

inferredcites →https://doi.org/10.1086/658400openalex-snapshot

Backward Bottlenecks

inferredcites →https://doi.org/10.1093/bioinformatics/btn129openalex-snapshot

adegenet : a R package for the multivariate analysis of genetic markers

inferredcites →https://doi.org/10.1093/gbe/evt109openalex-snapshot

Complex Patterns of Local Adaptation in Teosinte

inferredcites →https://doi.org/10.1093/genetics/121.4.845openalex-snapshot

Spatial autocorrelation analysis of migration and selection.

inferredcites →https://doi.org/10.1093/genetics/163.3.1177openalex-snapshot

Bayesian Inference of Recent Migration Rates Using Multilocus Genotypes

inferredcites →https://doi.org/10.1093/genetics/164.4.1567openalex-snapshot

Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

inferredcites →https://doi.org/10.1093/jhered/esu062openalex-snapshot

Testing for Hardy–Weinberg Proportions: Have We Lost the Plot?

inferredcites →https://doi.org/10.1093/molbev/msl191openalex-snapshot

Microsatellite Null Alleles and Estimation of Population Differentiation

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004186openalex-snapshot

Rate and Pattern of Mutation at Microsatellite Loci in Maize

inferredcites →https://doi.org/10.1098/rspb.2019.1440openalex-snapshot

Tracing back the origin of pumpkins (Cucurbita pepossp.pepoL.) in Mexico

inferredcites →https://doi.org/10.1111/2041-210x.12424openalex-snapshot

Enhanced computational methods for quantifying the effect of geographic and environmental isolation on genetic differentiation

inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot

Detecting the number of clusters of individuals using the software structure : a simulation study

inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03330.xopenalex-snapshot

Reliable selfing rate estimates from imperfect population genetic data

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04559.xopenalex-snapshot

Fine scale genetic structure in the wild ancestor of maize (Zea maysssp.parviglumis)

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04784.xopenalex-snapshot

Calculations of population differentiation based on GST and D: forget GST but not all of statistics!

inferredcites →https://doi.org/10.1111/j.1461-0248.2006.00889.xopenalex-snapshot

Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers

inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00684.xopenalex-snapshot

micro ‐ checker : software for identifying and correcting genotyping errors in microsatellite data

inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01931.xopenalex-snapshot

genepop ’007: a complete re‐implementation of the genepop software for Windows and Linux

inferredcites →https://doi.org/10.1111/j.1538-4632.1973.tb01011.xopenalex-snapshot

Maximum‐Difference Barriers: An Alternative Numerical Regionalization Method*

inferredcites →https://doi.org/10.1111/j.1558-5646.1965.tb01731.xopenalex-snapshot

THE INTERPRETATION OF POPULATION STRUCTURE BY F-STATISTICS WITH SPECIAL REGARD TO SYSTEMS OF MATING

inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot

ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03014.xopenalex-snapshot

Current trends in microsatellite genotyping

inferredcites →https://doi.org/10.1111/jbi.14281openalex-snapshot

The detection of disease clustering and a generalized regression approach.

inferredcites →https://doi.org/10.1111/mec.14082openalex-snapshot

Signatures of local adaptation in lowland and highland teosintes from whole‐genome sequencing of pooled samples

inferredcites →https://doi.org/10.1111/mec.14203openalex-snapshot

Connecting genomic patterns of local adaptation and niche suitability in teosintes

inferredcites →https://doi.org/10.1111/mec.15098openalex-snapshot

Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumisandZea mays mexicana)

inferredcites →https://doi.org/10.1126/science.1120808openalex-snapshot

Simulating Arctic Climate Warmth and Ice Field Retreat in the Last Interglaciation

inferredcites →https://doi.org/10.1139/g96-109openalex-snapshot

Maize simple repetitive DNA sequences: abundance and allele variation

inferredcites →https://doi.org/10.1214/aos/1176347963openalex-snapshot

Multivariate Adaptive Regression Splines

inferredcites →https://doi.org/10.1534/genetics.104.031393openalex-snapshot

Genetic Diversity and Population Structure of Teosinte

inferredcites →https://doi.org/10.1534/genetics.107.070631openalex-snapshot

Population Structure and Its Effects on Patterns of Nucleotide Polymorphism in Teosinte ( Zea mays ssp. parviglumis )

inferredcites →https://doi.org/10.1534/genetics.108.097238openalex-snapshot

Historical Divergence and Gene Flow in the Genus Zea

inferredcites →https://doi.org/10.1534/genetics.110.125260openalex-snapshot

Joint Inference of Microsatellite Mutation Models, Population History and Genealogies Using Transdimensional Markov Chain Monte Carlo

inferredcites →https://doi.org/10.2135/cropsci1998.0011183x003800040034xopenalex-snapshot

Utility of SSRs for Determining Genetic Similarities an Relationships in Maize Using an Agarose Gel System

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fgene.2020.00870openalex-snapshot

Evaluation of the Minimum Sampling Design for Population Genomic and Microsatellite Studies: An Analysis Based on Wild Maize

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