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Genome-wide diversity of coconut from northern South America uncovers genotypes present in Colombia and strong population structure

https://doi.org/10.1101/825398
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-0-387-71201-7_10openalex-snapshot
Coconut Breeding
inferredcites →https://doi.org/10.1007/978-3-319-91944-7_17openalex-snapshot
Breeding of Coconut (Cocos Nucifera L.): The Tree of Life
inferredcites →https://doi.org/10.1007/s001220050772openalex-snapshot
Evaluating genetic relationships between indigenous coconut (Cocos nucifera L.) accessions from Sri Lanka by means of AFLP profiling
inferredcites →https://doi.org/10.1007/s001220051350openalex-snapshot
An analysis of genetic diversity in coconut (Cocos nucifera) populations from across the geographic range using sequence-tagged microsatellites (SSRs) and AFLPs
inferredcites →https://doi.org/10.1007/s10722-008-9362-6openalex-snapshot
Coconut (Cocos nucifera L.) DNA studies support the hypothesis of an ancient Austronesian migration from Southeast Asia to America
inferredcites →https://doi.org/10.1007/s12686-011-9548-7openalex-snapshot
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
inferredcites →https://doi.org/10.1016/j.scienta.2016.08.028openalex-snapshot
SSR markers indicate a common origin of self-pollinating dwarf coconut in South-East Asia under domestication
inferredcites →https://doi.org/10.1016/s1872-2032(06)60003-6openalex-snapshot
Characteristics of soil fauna community in the Dongjiao coconut plantation ecosystem in Hainan, China
inferredcites →https://doi.org/10.1017/s1479262117000119openalex-snapshot
Genetic diversity, population structure and association analysis in coconut (Cocos nucifera L.) germplasm using SSR markers
inferredcites →https://doi.org/10.1038/nbt.2050openalex-snapshot
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/s41586-020-2487-2openalex-snapshot
Native American gene flow into Polynesia predating Easter Island settlement
inferredcites →https://doi.org/10.1051/fruits/2012002openalex-snapshot
Coconut water uses, composition and properties: a review
inferredcites →https://doi.org/10.1093/aob/mcm048openalex-snapshot
Contrasting Patterns in Crop Domestication and Domestication Rates: Recent Archaeobotanical Insights from the Old World
inferredcites →https://doi.org/10.1093/aob/mct244openalex-snapshot
The presence of coconut in southern Panama in pre-Columbian times: clearing up the confusion
inferredcites →https://doi.org/10.1093/bioinformatics/btm233openalex-snapshot
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
inferredcites →https://doi.org/10.1093/bioinformatics/btn129openalex-snapshot
adegenet : a R package for the multivariate analysis of genetic markers
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/gigascience/gix095openalex-snapshot
The genome draft of coconut (Cocos nucifera)
inferredcites →https://doi.org/10.1093/molbev/msy023openalex-snapshot
RADpainter and fineRADstructure: Population Inference from RADseq Data
inferredcites →https://doi.org/10.1093/nar/8.19.4321openalex-snapshot
Rapid isolation of high molecular weight plant DNA
inferredcites →https://doi.org/10.1093/oxfordjournals.aob.a086195openalex-snapshot
Germination and Taxonomy of the Coconut
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05541.xopenalex-snapshot
Forecasting changes in population genetic structure of alpine plants in response to global warming
inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00828.xopenalex-snapshot
hierfstat , a package for r to compute and test hierarchical F ‐statistics
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02591.xopenalex-snapshot
Inferring weak population structure with the assistance of sample group information
inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot
Stacks: an analysis tool set for population genomics
inferredcites →https://doi.org/10.1186/1471-2164-15-767openalex-snapshot
Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in cultivated watermelon
inferredcites →https://doi.org/10.1186/s12864-016-3297-7openalex-snapshot
Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing
inferredcites →https://doi.org/10.1186/s12864-016-3429-0openalex-snapshot
Genotyping-by-sequencing of a melon (Cucumis melo L.) germplasm collection from a secondary center of diversity highlights patterns of genetic variation and genomic features of different gene pools
inferredcites →https://doi.org/10.1371/journal.pone.0021143openalex-snapshot
Independent Origins of Cultivated Coconut (Cocos nucifera L.) in the Old World Tropics
inferredcites →https://doi.org/10.1371/journal.pone.0160941openalex-snapshot
Genetic Diversity and Population Structure of Cowpea (Vigna unguiculata L. Walp)
inferredcites →https://doi.org/10.1371/journal.pone.0161333openalex-snapshot
Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies
inferredcites →https://doi.org/10.1371/journal.pone.0163990openalex-snapshot
Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome
inferredcites →https://doi.org/10.1371/journal.pone.0188745openalex-snapshot
Genetic diversity and population structure analysis of spinach by single-nucleotide polymorphisms identified through genotyping-by-sequencing
inferredcites →https://doi.org/10.1371/journal.pone.0205988openalex-snapshot
Genotyping-by-sequencing highlights patterns of genetic structure and domestication in artichoke and cardoon
inferredcites →https://doi.org/10.1534/g3.119.400215openalex-snapshot
De Novo Genome Sequence Assembly of Dwarf Coconut (Cocos nucifera L. ‘Catigan Green Dwarf’) Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species
inferredcites →https://doi.org/10.1534/genetics.114.164350openalex-snapshot
fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets
inferredcites →https://doi.org/10.1590/s1984-70332013000400006openalex-snapshot
Genetic diversity in Brazilian tall coconut populations by microsatellite markers
inferredcites →https://doi.org/10.21135/893275150.015openalex-snapshot
Population Genetics of Zamia in Puerto Rico, a Study with Ten SSR Loci
inferredcites →https://doi.org/10.3389/fgene.2015.00208openalex-snapshot
Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality
inferredcites →https://doi.org/10.3732/ajb.0800378openalex-snapshot
Palms (Arecaceae) from a Paleocene rainforest of northern Colombia
inferredcites →https://doi.org/10.7717/peerj.9291openalex-snapshot
DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-3-030-76649-8_5openalex-snapshot
Characterization of Genetic Diversity Using Molecular Markers
inferred← citeshttps://doi.org/10.1007/978-3-031-05706-9_2openalex-snapshot
Genomic Designing for Abiotic Stress Resistance in Coconut
inferred← citeshttps://doi.org/10.1007/978-3-319-97946-5_6openalex-snapshot
Genomic Designing of Climate-Smart Coconut
inferred← citeshttps://doi.org/10.1007/s12231-025-09653-1openalex-snapshot
Identification and Preservation of the Hawaiian “Niu Hiwa” Within Hawai‘i’s Coconut Diversity
inferred← citeshttps://doi.org/10.3390/plants12091913openalex-snapshot
Genomics and Transcriptomics Reveal Genetic Contribution to Population Diversity and Specific Traits in Coconut
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