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A peek into Western Indian Ocean microbial richness: a pilot for a coral microbiome study

https://doi.org/10.1101/829564
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jobm.201800382openalex-snapshot
Enhanced halophilic lipase secretion by Marinobacter litoralis SW‐45 and its potential fatty acid esters release
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Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities
inferredcites →https://doi.org/10.1007/bf00391848openalex-snapshot
Ecology of Conus on eastern Indian Ocean fringing reefs: Diversity of species and resource utilization
inferredcites →https://doi.org/10.1007/s10098-006-0062-7openalex-snapshot
Bioprospecting of organisms from the deep sea: scientific and environmental aspects
inferredcites →https://doi.org/10.1007/s10482-015-0490-7openalex-snapshot
Ferrovibrio xuzhouensis sp. nov., a cyhalothrin-degrading bacterium isolated from cyhalothrin contaminated wastewater
inferredcites →https://doi.org/10.1016/j.gene.2015.10.034openalex-snapshot
Metagenomic studies of the Red Sea
inferredcites →https://doi.org/10.1016/j.ijantimicag.2009.02.009openalex-snapshot
Anti-methicillin-resistant Staphylococcus aureus (MRSA) activity of MC21-B, an antibacterial compound produced by the marine bacterium Pseudoalteromonas phenolica O-BC30T
inferredcites →https://doi.org/10.1016/j.scitotenv.2018.11.250openalex-snapshot
Profiles of bacterial assemblages from microplastics of tropical coastal environments
inferredcites →https://doi.org/10.1016/j.tree.2009.11.001openalex-snapshot
The future of coral reefs: a microbial perspective
inferredcites →https://doi.org/10.1016/s0168-6496(99)00063-xopenalex-snapshot
Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents
inferredcites →https://doi.org/10.1038/ismej.2015.257openalex-snapshot
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1073/pnas.0605127103openalex-snapshot
Microbial diversity in the deep sea and the underexplored “rare biosphere”
inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot
phangorn: phylogenetic analysis in R
inferredcites →https://doi.org/10.1098/rspb.2012.2328openalex-snapshot
Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases
inferredcites →https://doi.org/10.1098/rsta.2004.1492openalex-snapshot
Fish, fishers and fisheries of the Western Indian Ocean: their diversity and status. A preliminary assessment
inferredcites →https://doi.org/10.1111/1462-2920.13676openalex-snapshot
Permeability shapes bacterial communities in sublittoral surface sediments
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05470.xopenalex-snapshot
Towards next‐generation biodiversity assessment using DNA metabarcoding
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01383.xopenalex-snapshot
Metagenomic analysis of the microbial community associated with the coral Porites astreoides
inferredcites →https://doi.org/10.1111/j.1574-6941.2009.00772.xopenalex-snapshot
Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1126/science.1255642openalex-snapshot
Aquatic animal telemetry: A panoramic window into the underwater world
inferredcites →https://doi.org/10.1128/aac.47.2.480-488.2003openalex-snapshot
MC21-A, a Bactericidal Antibiotic Produced by a New Marine Bacterium, Pseudoalteromonas phenolica sp. nov. O-BC30 T , against Methicillin-Resistant Staphylococcus aureus
inferredcites →https://doi.org/10.1186/2042-5783-2-3openalex-snapshot
Metagenomics - a guide from sampling to data analysis
inferredcites →https://doi.org/10.1186/s40168-019-0702-xopenalex-snapshot
Understanding microbial community dynamics to improve optimal microbiome selection
inferredcites →https://doi.org/10.1371/journal.pone.0016163openalex-snapshot
E2F1 Regulates Cellular Growth by mTORC1 Signaling
inferredcites →https://doi.org/10.1371/journal.pone.0042047openalex-snapshot
Metagenomic Exploration of Viruses throughout the Indian Ocean
inferredcites →https://doi.org/10.1371/journal.pone.0045013openalex-snapshot
The Diversity and Biogeography of Western Indian Ocean Reef-Building Corals
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.32614/rj-2016-025openalex-snapshot
Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R
inferredcites →https://doi.org/10.3390/ijerph14020130openalex-snapshot
Exploring the Impacts of Anthropogenic Disturbance on Seawater and Sediment Microbial Communities in Korean Coastal Waters Using Metagenomics Analysis
inferredcites →https://doi.org/10.5281/zenodo.1172782openalex-snapshot
Silva Taxonomic Training Data Formatted For Dada2 (Silva Version 132)
inferredcites →https://doi.org/10.7717/peerj.3717openalex-snapshot
The microbial biosphere of the coral Acropora cervicornis in Northeastern Puerto Rico

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3389/fmicb.2021.584850openalex-snapshot
Highly Contaminated Marine Sediments Can Host Rare Bacterial Taxa Potentially Useful for Bioremediation
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