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Genomics of a complete butterfly continent

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Reduced Introgression of Sex Chromosome Markers in the Mexican Howler Monkey (Alouatta palliata × A. pigra) Hybrid Zone
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The Monarch Butterfly Genome Yields Insights into Long-Distance Migration
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Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans
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Contrasting Roles of Transcription Factors Spineless and EcR in the Highly Dynamic Chromatin Landscape of Butterfly Wing Metamorphosis
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Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments
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High-quality genome assembly of the silkworm, Bombyx mori
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Farnesyl pyrophosphate synthase: a key enzyme in isoprenoid biosynthetic pathway and potential molecular target for drug development
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Gene Regulation and Speciation
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Population genomics of rapid adaptation by soft selective sweeps
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The first complete genomes of Metalmarks and the classification of butterfly families
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Basic Local Alignment Search Tool
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Evolution of genome size: new approaches to an old problem
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On the origin of species by means of natural selection: Or the preservation of the favoured races in the struggle for life.
inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot
Adaptive protein evolution at the Adh locus in Drosophila
inferredcites →https://doi.org/10.1038/nature09710openalex-snapshot
Genetic history of an archaic hominin group from Denisova Cave in Siberia
inferredcites →https://doi.org/10.1038/nature11041openalex-snapshot
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
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Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
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The genomic landscape of Neanderthal ancestry in present-day humans
inferredcites →https://doi.org/10.1038/nature13408openalex-snapshot
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
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Ancient gene flow from early modern humans into Eastern Neanderthals
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The genetic history of Ice Age Europe
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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies
inferredcites →https://doi.org/10.1038/ng1888openalex-snapshot
Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variants
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Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/s41467-017-01663-5openalex-snapshot
The deep conservation of the Lepidoptera Z chromosome suggests a non-canonical origin of the W
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The molecular genetic basis of herbivory between butterflies and their host plants
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Deep generative models of genetic variation capture the effects of mutations
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Complete genomes of Hairstreak butterflies, their speciation and nucleo-mitochondrial incongruence
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Ants that associate with Lycaeninae butterfly larvae: diversity, ecology and biogeography
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Phyllotreta striolata flea beetles use host plant defense compounds to create their own glucosinolate-myrosinase system
inferredcites →https://doi.org/10.1073/pnas.151443298openalex-snapshot
Circadian rhythms of female mating activity governed by clock genes in Drosophila
inferredcites →https://doi.org/10.1073/pnas.1821304116openalex-snapshot
Genomes of skipper butterflies reveal extensive convergence of wing patterns
inferredcites →https://doi.org/10.1073/pnas.1932072100openalex-snapshot
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
inferredcites →https://doi.org/10.1073/pnas.2132833100openalex-snapshot
The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids
inferredcites →https://doi.org/10.1086/284387openalex-snapshot
Lycaenid Butterflies and Ants: Selection for Nitrogen-Fixing and Other Protein-Rich Food Plants
inferredcites →https://doi.org/10.1093/bioinformatics/btp120openalex-snapshot
TopHat: discovering splice junctions with RNA-Seq
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Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot
DendroPy: a Python library for phylogenetic computing
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/genetics/144.4.1331openalex-snapshot
D obzhansky , B ateson , and the Genetics of Speciation
inferredcites →https://doi.org/10.1093/genetics/149.3.1407openalex-snapshot
Courtship and Visual Defects of cacophony Mutants Reveal Functional Complexity of a Calcium-Channel α1 Subunit in Drosophila
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msw046openalex-snapshot
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
inferredcites →https://doi.org/10.1093/nar/gkh379openalex-snapshot
AUGUSTUS: a web server for gene finding in eukaryotes
inferredcites →https://doi.org/10.1093/nar/gki937openalex-snapshot
Gene identification in novel eukaryotic genomes by self-training algorithm
inferredcites →https://doi.org/10.1093/nar/gkt557openalex-snapshot
Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish
inferredcites →https://doi.org/10.1093/nar/gku1099openalex-snapshot
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
inferredcites →https://doi.org/10.1093/nar/gku1179openalex-snapshot
Gene Ontology Consortium: going forward
inferredcites →https://doi.org/10.1093/nar/gkx1074openalex-snapshot
Conserved non-coding elements: developmental gene regulation meets genome organization
inferredcites →https://doi.org/10.1093/nar/gky1003openalex-snapshot
FlyBase 2.0: the next generation
inferredcites →https://doi.org/10.1093/nar/gky1049openalex-snapshot
UniProt: a worldwide hub of protein knowledge
inferredcites →https://doi.org/10.1098/rspb.2010.0392openalex-snapshot
Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies
inferredcites →https://doi.org/10.1098/rspb.2011.1430openalex-snapshot
Cretaceous origin and repeated tertiary diversification of the redefined butterflies
inferredcites →https://doi.org/10.1098/rspb.2012.2302openalex-snapshot
Introgression of wing pattern alleles and speciation via homoploid hybridization inHeliconiusbutterflies: a review of evidence from the genome
inferredcites →https://doi.org/10.1098/rspb.2014.0970openalex-snapshot
Phylogenomics provides strong evidence for relationships of butterflies and moths
inferredcites →https://doi.org/10.1098/rspb.2016.1735openalex-snapshot
When COI barcodes deceive: complete genomes reveal introgression in hairstreaks
inferredcites →https://doi.org/10.1098/rspb.2019.0609openalex-snapshot
Genomes reveal drastic and recurrent phenotypic divergence in firetip skipper butterflies (Hesperiidae: Pyrrhopyginae)
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.159426.113openalex-snapshot
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
inferredcites →https://doi.org/10.1101/gr.169292.113openalex-snapshot
Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato
inferredcites →https://doi.org/10.1101/gr.170720.113openalex-snapshot
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
inferredcites →https://doi.org/10.1101/gr.1933104openalex-snapshot
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
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Revised classification of the family Hesperiidae (Lepidoptera: Hesperioidea) based on combined molecular and morphological data
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00841.xopenalex-snapshot
FEMALE HETEROGAMETY AND SPECIATION: REDUCED INTROGRESSION OF THE Z CHROMOSOME BETWEEN TWO SPECIES OF NIGHTINGALES
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/syen.12335openalex-snapshot
Getting western: biogeographical analysis of morphological variation, mitochondrial haplotypes and nuclear markers reveals cryptic species and hybrid zones in the Junonia butterflies of the American southwest and Mexico
inferredcites →https://doi.org/10.1126/science.1135590openalex-snapshot
The Latitudinal Gradient in Recent Speciation and Extinction Rates of Birds and Mammals
inferredcites →https://doi.org/10.1126/science.1149180openalex-snapshot
A Mosaic of Chemical Coevolution in a Large Blue Butterfly
inferredcites →https://doi.org/10.1126/science.1163583openalex-snapshot
Queen Ants Make Distinctive Sounds That Are Mimicked by a Butterfly Social Parasite
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.1230492openalex-snapshot
Time Scales of Critical Events Around the Cretaceous-Paleogene Boundary
inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot
Extensive introgression in a malaria vector species complex revealed by phylogenomics
inferredcites →https://doi.org/10.1126/science.150.3704.1733openalex-snapshot
Defensive Secretion of a Caterpillar ( Papilio )
inferredcites →https://doi.org/10.1126/science.aaw2090openalex-snapshot
Genomic architecture and introgression shape a butterfly radiation
inferredcites →https://doi.org/10.1126/science.aaw6718openalex-snapshot
Protein interaction networks revealed by proteome coevolution
inferredcites →https://doi.org/10.1146/annurev-physiol-021909-135815openalex-snapshot
Circadian Organization of Behavior and Physiology in Drosophila
inferredcites →https://doi.org/10.1146/annurev.ento.42.1.525openalex-snapshot
PERITROPHIC MATRIX STRUCTURE AND FUNCTION
inferredcites →https://doi.org/10.1146/annurev.ento.47.091201.145257openalex-snapshot
The Ecology and Evolution of Ant Association in the Lycaenidae (Lepidoptera)
inferredcites →https://doi.org/10.1186/1471-2105-5-59openalex-snapshot
Gene finding in novel genomes
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/gb-2008-9-1-r7openalex-snapshot
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
inferredcites →https://doi.org/10.1186/gb-2010-11-11-r116openalex-snapshot
Quake: quality-aware detection and correction of sequencing errors
inferredcites →https://doi.org/10.1186/gb-2010-11-4-116openalex-snapshot
Phenotypic connections in surprising places
inferredcites →https://doi.org/10.1186/s12862-017-1016-xopenalex-snapshot
Hostplant change and paleoclimatic events explain diversification shifts in skipper butterflies (Family: Hesperiidae)
inferredcites →https://doi.org/10.1186/s12864-015-1846-0openalex-snapshot
Skipper genome sheds light on unique phenotypic traits and phylogeny
inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot
Repbase Update, a database of repetitive elements in eukaryotic genomes
inferredcites →https://doi.org/10.12688/f1000research.9765.1openalex-snapshot
Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins
inferredcites →https://doi.org/10.1371/journal.pbio.1002224openalex-snapshot
The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
inferredcites →https://doi.org/10.1371/journal.pcbi.1005324openalex-snapshot
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
inferredcites →https://doi.org/10.1371/journal.pgen.1006971openalex-snapshot
Fine scale mapping of genomic introgressions within the Drosophila yakuba clade
inferredcites →https://doi.org/10.1371/journal.pgen.1007349openalex-snapshot
Outstanding questions in the study of archaic hominin admixture
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1515/9781503624450openalex-snapshot
The Butterflies of North America
inferredcites →https://doi.org/10.1534/genetics.105.047449openalex-snapshot
Compensatory cis-trans Evolution and the Dysregulation of Gene Expression in Interspecific Hybrids of Drosophila
inferredcites →https://doi.org/10.1534/genetics.114.168112openalex-snapshot
Hybrid Incompatibility Arises in a Sequence-Based Bioenergetic Model of Transcription Factor Binding
inferredcites →https://doi.org/10.15468/cus9xeopenalex-snapshot
Changes to North American butterfly names
inferredcites →https://doi.org/10.18473/lepi.69i4.a2openalex-snapshot
Butterflies of Ancient Egypt
inferredcites →https://doi.org/10.18473/lepi.v72i2.a2openalex-snapshot
The Taxonomy and Population Structure of the Buckeye Butterflies (GenusJunonia, Nymphalidae: Nymphalini) of Florida, USA
inferredcites →https://doi.org/10.2174/1389202918666170426113315openalex-snapshot
Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers
inferredcites →https://doi.org/10.3390/genes9070358openalex-snapshot
Evolutionary and Medical Consequences of Archaic Introgression into Modern Human Genomes
inferredcites →https://doi.org/10.3390/ijms17121966openalex-snapshot
Cuticular Lipids as a Cross-Talk among Ants, Plants and Butterflies
inferredcites →https://doi.org/10.5281/zenodo.3677235openalex-snapshot
Fifty new genera of Hesperiidae (Lepidoptera)
inferredcites →https://doi.org/10.5962/bhl.title.68064openalex-snapshot
On the origin of species by means of natural selection, or, The preservation of favoured races in the struggle for life /
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A Catalogue of the Butterflies of the United States and Canada with a complete bibliography of the descriptive and systematic literature

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Reinstated status of the butterfly genus Agraulis (Lepidoptera, Nymphalidae, Heliconiinae)
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Lessons from the genomic analysis of Hesperiidae (Lepidoptera) holotypes in the MIZA collection (Maracay, Venezuela)
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inferred← citeshttps://doi.org/10.6620/zs.2020.59-10zenodo-depositor-declared
Roosting Site Usage, Gregarious Roosting and Behavioral Interactions During Roost-assembly of Two Lycaenidae Butterflies.
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Influence of the large‐Z effect during contact between butterfly sister species
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Assessing risk for butterflies in the context of climate change, demographic uncertainty, and heterogeneous data sources
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Conserve the eco-evolutionary dynamic, not the subspecies: phenological divergence and gene flow between temporal cohorts of Euphilotes ancilla endemic to southern Nevada
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Phylogenetic Investigations on Subfamily Lycaeninae from the Northwestern Region of India
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Speciation, Process of
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Phylogenomic test of mitochondrial clues to archaic ancestors in a group of hybridizing swallowtail butterflies
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A phylogeny for the Drosophila montium species group: A model clade for comparative analyses
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Evolutionary impacts of introgressive hybridization in a rapidly evolving group of jumping spiders (F. Salticidae, Habronattus americanus group)
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Gauging ages of tiger swallowtail butterflies using alternate SNP analyses
inferred← citeshttps://doi.org/10.1038/d41586-019-03521-4openalex-snapshot
Every butterfly in the United States and Canada now has a genome sequence
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A switch to feeding on cycads generates parallel accelerated evolution of toxin tolerance in two clades of Eumaeus caterpillars (Lepidoptera: Lycaenidae)
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Temporal dynamics of color polymorphism and hybridization in Colias butterflies
inferred← citeshttps://doi.org/10.1093/gigascience/giab041openalex-snapshot
De novo genome assemblies of butterflies
inferred← citeshttps://doi.org/10.1093/isd/ixab010openalex-snapshot
Phylogeny, Phenology, and Foraging Breadth ofAshmeadiella(Hymenoptera: Megachilidae)
inferred← citeshttps://doi.org/10.1098/rspb.2020.2512openalex-snapshot
Evolutionary trade-offs between male secondary sexual traits revealed by a phylogeny of the hyperdiverse tribe Eumaeini (Lepidoptera: Lycaenidae)
inferred← citeshttps://doi.org/10.1101/2022.05.22.492972openalex-snapshot
Assessing risk for butterflies in the context of climate change, demographic uncertainty, and heterogenous data sources
inferred← citeshttps://doi.org/10.1101/2022.08.10.503521openalex-snapshot
Seasonal polyphenism of wing colors and its influence on sulphur butterfly diversification
inferred← citeshttps://doi.org/10.1111/1365-2435.13956openalex-snapshot
Central and Northern European caterpillar assemblages show strong phylogenetic structure
inferred← citeshttps://doi.org/10.1111/mec.16071openalex-snapshot
Population genomics reveals variable patterns of immune gene evolution in monarch butterflies (Danaus plexippus)
inferred← citeshttps://doi.org/10.1111/syen.12523openalex-snapshot
Integrative taxonomy clarifies species limits in the hitherto monotypic passion‐vine butterfly genera Agraulis and Dryas (Lepidoptera, Nymphalidae, Heliconiinae)
inferred← citeshttps://doi.org/10.1126/science.abi9407openalex-snapshot
Deep cis-regulatory homology of the butterfly wing pattern ground plan
inferred← citeshttps://doi.org/10.1146/annurev-ento-062920-095809openalex-snapshot
Advancing Undergraduate Laboratory Education Using Non-Model Insect Species
inferred← citeshttps://doi.org/10.1371/journal.pone.0236417openalex-snapshot
A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry
inferred← citeshttps://doi.org/10.1371/journal.pone.0300811openalex-snapshot
A genetic atlas for the butterflies of continental Canada and United States
inferred← citeshttps://doi.org/10.18473/lepi.79i2.a7openalex-snapshot
Tundra Colias F. (Papilionoidea, Pieridae): Lessons in Arctic Insect Biogeography through the Discovery of Old Errors and a New Subspecies
inferred← citeshttps://doi.org/10.3390/d13100468openalex-snapshot
Mitogenomes of Three Satyrid Butterfly Species (Nymphalidae: Lepidoptera) and Reconstructed Phylogeny of Satyrinae
inferred← citeshttps://doi.org/10.3390/genes13081372openalex-snapshot
Mosaic Evolution of Molecular Pathways for Sex Pheromone Communication in a Butterfly
inferred← citeshttps://doi.org/10.4289/0013-8797.124.4.735openalex-snapshot
Hybrid Skipper Butterfly Characterized by Facies, Genitalia, and Genomes (Lepidoptera: Hesperiidae: Pyrginae)
inferred← citeshttps://doi.org/10.70675/e06f04b6zcf4bz4fd7za675zfcc4d6d7817dopenalex-snapshot
Sociality and evolutionary convergence : the contribution of ecomorphological and transcriptomic data in cockroaches
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