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Ecological divergence of DNA methylation patterns at distinct spatial scales

https://doi.org/10.1101/832816
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Selected aspects of transgenerational epigenetic inheritance and resetting in plants
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Detecting Polygenic Evolution: Problems, Pitfalls, and Promises
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Microgeographic adaptation and the spatial scale of evolution
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Adaptation to Global Change: A Transposable Element–Epigenetics Perspective
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Genomic Quantitative Genetics to Study Evolution in the Wild
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Heterosis and inbreeding depression of epigenetic Arabidopsis hybrids
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Understanding the evolutionary potential of epigenetic variation: a comparison of heritable phenotypic variation in epiRILs, RILs, and natural ecotypes of Arabidopsis thaliana
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Evolutionary consequences of epigenetic inheritance
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Quantitative epigenetics and evolution
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Contribution of epigenetic variation to adaptation in Arabidopsis
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Epigenetics and adaptive phenotypic variation between habitats in an asexual snail
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The relationship between transgenerational acquired resistance and global DNA methylation in Arabidopsis
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A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity
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Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia
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Epigenetic signatures of invasive status in populations of marine invertebrates
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Limitations of GCTA as a solution to the missing heritability problem
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Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation
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Role of gene body methylation in acclimatization and adaptation in a basal metazoan
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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions
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15 years of GDR: New data and functionality in the Genome Database for Rosaceae
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Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations
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Priming and memory of stress responses in organisms lacking a nervous system
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Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis
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How differing modes of non‐genetic inheritance affect population viability in fluctuating environments
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Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics
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Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species
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Genome‐wide signature of local adaptation linked to variable C p G methylation in oak populations
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Migration‐related phenotypic divergence is associated with epigenetic modifications in rainbow trout
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Genetic and epigenetic differences associated with environmental gradients in replicate populations of two salt marsh perennials
inferredcites →https://doi.org/10.1111/mec.13563openalex-snapshot
Species‐wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients
inferredcites →https://doi.org/10.1111/mec.13573openalex-snapshot
The multivariate association between genomewide DNA methylation and climate across the range of Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/mec.14727openalex-snapshot
Synthesizing the role of epigenetics in the response and adaptation of species to climate change in freshwater ecosystems
inferredcites →https://doi.org/10.1111/mec.14794openalex-snapshot
The impact of transposable elements in adaptive evolution
inferredcites →https://doi.org/10.1111/nph.14266openalex-snapshot
Regional heritability mapping and genome‐wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus
inferredcites →https://doi.org/10.1111/nph.15408openalex-snapshot
The role of plant epigenetics in biotic interactions
inferredcites →https://doi.org/10.1111/nph.15487openalex-snapshot
Structure, stability and ecological significance of natural epigenetic variation: a large‐scale survey in Plantago lanceolata
inferredcites →https://doi.org/10.1126/sciadv.1501340openalex-snapshot
Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics
inferredcites →https://doi.org/10.1126/science.aaf4945openalex-snapshot
Transgenerational inheritance: Models and mechanisms of non–DNA sequence–based inheritance
inferredcites →https://doi.org/10.1186/gb-2011-12-10-232openalex-snapshot
Genome-wide association studies in plants: the missing heritability is in the field
inferredcites →https://doi.org/10.1186/gb-2012-13-10-r87openalex-snapshot
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1371/journal.pone.0183384openalex-snapshot
Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers
inferredcites →https://doi.org/10.2217/epi.15.64openalex-snapshot
DNA Methylation Profiling: Comparison of Genome-Wide Sequencing Methods and the Infinium Human Methylation 450 Bead Chip
inferredcites →https://doi.org/10.3389/fgene.2016.00189openalex-snapshot
Epigenetic Inheritance across the Landscape
inferredcites →https://doi.org/10.3389/fpls.2016.01354openalex-snapshot
Epigenetic Memory as a Basis for Intelligent Behavior in Clonal Plants
inferredcites →https://doi.org/10.3389/fpls.2018.01677openalex-snapshot
Transgenerational Effects and Epigenetic Memory in the Clonal Plant Trifolium repens
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