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Computational Approach for Screening the Whole Proteome of Hantavirus and Designing a Multi-Epitope Subunit Vaccine

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Haemorrhagic fever with renal syndrome: literature review and distribution analysis in China
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Clinical and molecular epidemiological features of hemorrhagic fever with renal syndrome in Korea over a 10-year period
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Hantaviruses—Globally emerging pathogens
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Hantavirus cardiopulmonary syndrome due to Puumala virus in Germany
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A novel multi-epitope peptide vaccine against cancer: An in silico approach
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Development of a SYBR Green I based one-step real-time PCR assay for the detection of Hantaan virus
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Evidence of recombination in Tula virus strains from Serbia
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Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: A reverse vaccinology based approach
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Overlapping CD8 + and CD4 + T-cell epitopes identification for the progression of epitope-based peptide vaccine from nucleocapsid and glycoprotein of emerging Rift Valley fever virus using immunoinformatics approach
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Excavating chikungunya genome to design B and T cell multi-epitope subunit vaccine using comprehensive immunoinformatics approach to control chikungunya infection
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Immunoinformatics approaches for designing a novel multi epitope peptide vaccine against human norovirus (Norwalk virus)
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Reverse vaccinology approach to design a novel multi-epitope subunit vaccine against avian influenza A (H7N9) virus
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Exploring T & B-cell epitopes and designing multi-epitope subunit vaccine targeting integration step of HIV-1 lifecycle using immunoinformatics approach
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Vaccine development
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Modulation of HIV peptide antigen specific cellular immune response by synthetic α- and β-defensin peptides
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The challenges and opportunities for the development of a T-cell epitope-based herpes simplex vaccine
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Immunoinformatics approaches to design a novel multi-epitope subunit vaccine against HIV infection
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Discovery of hantaviruses in bats and insectivores and the evolution of the genus Hantavirus
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Hantaviruses and cardiopulmonary syndrome in South America
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Preliminary evaluation of a candidate multi-epitope-vaccine against the classical swine fever virus
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Strategic Development of a Next-Generation Multi-Epitope Vaccine To Prevent Nipah Virus Zoonotic Infection
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Identification of a CD4 T-cell epitope in the hemagglutinin stalk domain of pandemic H1N1 influenza virus and its antigen-driven TCR usage signature in BALB/c mice
inferredcites →https://doi.org/10.1038/cmi.2017.3openalex-snapshot
Efficient control of chronic LCMV infection by a CD4 T cell epitope-based heterologous prime-boost vaccination in a murine model
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Multi-epitope vaccines: a promising strategy against tumors and viral infections
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A consensus epitope prediction approach identifies the breadth of murine TCD8+-cell responses to vaccinia virus
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Germline bias dictates cross-serotype reactivity in a common dengue-virus-specific CD8+ T cell response
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Template-based protein structure modeling using the RaptorX web server
inferredcites →https://doi.org/10.1038/nprot.2016.169openalex-snapshot
The ClusPro web server for protein–protein docking
inferredcites →https://doi.org/10.1038/nsb0902-646openalex-snapshot
Molecular dynamics simulations of biomolecules
inferredcites →https://doi.org/10.1038/s41467-018-03321-wopenalex-snapshot
Divergent T-cell receptor recognition modes of a HLA-I restricted extended tumour-associated peptide
inferredcites →https://doi.org/10.1038/s41467-018-07815-5openalex-snapshot
Broad CD8+ T cell cross-recognition of distinct influenza A strains in humans
inferredcites →https://doi.org/10.1038/s41598-017-08842-wopenalex-snapshot
Exploring Leishmania secretory proteins to design B and T cell multi-epitope subunit vaccine using immunoinformatics approach
inferredcites →https://doi.org/10.1038/s41598-017-09199-wopenalex-snapshot
Exploring dengue genome to construct a multi-epitope based subunit vaccine by utilizing immunoinformatics approach to battle against dengue infection
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Novel Immunoinformatics Approaches to Design Multi-epitope Subunit Vaccine for Malaria by Investigating Anopheles Salivary Protein
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Exploring NS3/4A, NS5A and NS5B proteins to design conserved subunit multi-epitope vaccine against HCV utilizing immunoinformatics approaches
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In-silico design of a multi-epitope vaccine candidate against onchocerciasis and related filarial diseases
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Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential
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The molecular basis for peptide repertoire selection in the human leukocyte antigen (HLA) C*06:02 molecule
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Serological Evidence of Human Hantavirus Infections in Guinea, West Africa
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Anjozorobe Hantavirus, a New Genetic Variant of Thailand Virus Detected in Rodents from Madagascar
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Emerging Viruses in the Republic of Suriname: Retrospective and Prospective Study into Chikungunya Circulation and Suspicion of Human Hantavirus Infections, 2008–2012 and 2014
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Hantaan Virus Triggers TLR4-Dependent Innate Immune Responses
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Normal Mode Analysis Theoretical and Applications to Biological and Chemical Systems.
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SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments
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SOLpro: accurate sequence-based prediction of protein solubility
inferredcites →https://doi.org/10.1093/bioinformatics/btr497openalex-snapshot
iMod: multipurpose normal mode analysis in internal coordinates
inferredcites →https://doi.org/10.1093/bioinformatics/btt619openalex-snapshot
AllergenFP: allergenicity prediction by descriptor fingerprints
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Isolation of the Etiologic Agent of Korean Hemorrhagic Fever
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Nephropathia Epidemica: Detection of Antigen in Bank Voles and Serologic Diagnosis of Human Infection
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Isolation of the Etiologic Agent of Korean Hemorrhagic Fever
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Human Infections by Non–Rodent-Associated Hantaviruses in Africa
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JCat: a novel tool to adapt codon usage of a target gene to its potential expression host
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AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
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ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
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ViPR: an open bioinformatics database and analysis resource for virology research
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GalaxyRefine: protein structure refinement driven by side-chain repacking
inferredcites →https://doi.org/10.1093/nar/gku339openalex-snapshot
iMODS: internal coordinates normal mode analysis server
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PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex
inferredcites →https://doi.org/10.1093/nar/gkx346openalex-snapshot
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
inferredcites →https://doi.org/10.1093/nar/gky300openalex-snapshot
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
inferredcites →https://doi.org/10.1093/ndt/gfu319openalex-snapshot
Acute kidney injury and tools for risk-stratification in 456 patients with hantavirus-induced nephropathia epidemica
inferredcites →https://doi.org/10.1107/s0021889892009944openalex-snapshot
PROCHECK: a program to check the stereochemical quality of protein structures
inferredcites →https://doi.org/10.1107/s0907444911007888openalex-snapshot
Structure of HLA-A*0301 in complex with a peptide of proteolipid protein: insights into the role of HLA-A alleles in susceptibility to multiple sclerosis
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Hantavirus infections
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Use of defined TLR ligands as adjuvants within human vaccines
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A Global Perspective on Hantavirus Ecology, Epidemiology, and Disease
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Rational Design of a Multiepitope Vaccine Encoding T-Lymphocyte Epitopes for Treatment of Chronic Hepatitis B Virus Infections
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Cross-Allele Cytotoxic T Lymphocyte Responses against 2009 Pandemic H1N1 Influenza A Virus among HLA-A24 and HLA-A3 Supertype-Positive Individuals
inferredcites →https://doi.org/10.1128/jvi.02668-12openalex-snapshot
Complete Genome Sequence of Seoul Virus Isolated from Rattus norvegicus in the Democratic People's Republic of Korea
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Immunoinformatics Approach for Epitope-Based Peptide Vaccine Design and Active Site Prediction against Polyprotein of Emerging Oropouche Virus
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Peptide binding predictions for HLA DR, DP and DQ molecules
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Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins
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An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs
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AllerTOP - a server for in silico prediction of allergens
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Predicting population coverage of T-cell epitope-based diagnostics and vaccines
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Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines
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VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
inferredcites →https://doi.org/10.1186/1471-2105-8-424openalex-snapshot
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
inferredcites →https://doi.org/10.1186/1471-2105-9-514openalex-snapshot
ElliPro: a new structure-based tool for the prediction of antibody epitopes
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Cytokine expression during early and late phase of acute Puumala hantavirus infection
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Epidemic characteristics of hemorrhagic fever with renal syndrome in China, 2006–2012
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Geographical distribution and relative risk of Anjozorobe virus (Thailand orthohantavirus) infection in black rats (Rattus rattus) in Madagascar
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Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
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Spatiotemporal Transmission Dynamics of Hemorrhagic Fever with Renal Syndrome in China, 2005–2012
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Computational Immunology Meets Bioinformatics: The Use of Prediction Tools for Molecular Binding in the Simulation of the Immune System
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Synthetic Toll Like Receptor-4 (TLR-4) Agonist Peptides as a Novel Class of Adjuvants
inferredcites →https://doi.org/10.1371/journal.pone.0062216openalex-snapshot
Improved Method for Linear B-Cell Epitope Prediction Using Antigen’s Primary Sequence
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In Silico Approach for Predicting Toxicity of Peptides and Proteins
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A Potential Protein Adjuvant Derived from Mycobacterium tuberculosis Rv0652 Enhances Dendritic Cells-Based Tumor Immunotherapy
inferredcites →https://doi.org/10.1371/journal.ppat.1003159openalex-snapshot
Phylogeny and Origins of Hantaviruses Harbored by Bats, Insectivores, and Rodents
inferredcites →https://doi.org/10.1385/1-59259-584-7:531openalex-snapshot
Protein Identification and Analysis Tools in the ExPASy Server
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Molecular Docking: A Powerful Approach for Structure-Based Drug Discovery
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Neoepitopes as Cancer Immunotherapy Targets: Key Challenges and Opportunities
inferredcites →https://doi.org/10.29252/rmm.5.1.17openalex-snapshot
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inferredcites →https://doi.org/10.3201/eid0302.970202openalex-snapshot
Hantaviruses: A Global Disease Problem
inferredcites →https://doi.org/10.3201/eid1912.131217openalex-snapshot
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Hantaviruses as Zoonotic Pathogens in Germany
inferredcites →https://doi.org/10.3389/fcimb.2016.00001openalex-snapshot
Hemorrhagic Fever with Renal Syndrome: Pathogenesis and Clinical Picture
inferredcites →https://doi.org/10.3389/fcimb.2016.00101openalex-snapshot
N-acetylgalatosamine-Mediated Regulation of the aga Operon by AgaR in Streptococcus pneumoniae
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Methods for the Refinement of Protein Structure 3D Models
inferredcites →https://doi.org/10.3390/vaccines7020034openalex-snapshot
In silico Designed Ebola Virus T-Cell Multi-Epitope DNA Vaccine Constructions Are Immunogenic in Mice
inferredcites →https://doi.org/10.4049/jimmunol.1400199openalex-snapshot
Nα-Terminal Acetylation for T Cell Recognition: Molecular Basis of MHC Class I–Restricted Nα-Acetylpeptide Presentation
inferredcites →https://doi.org/10.4049/jimmunol.165.6.3260openalex-snapshot
Nonstandard Peptide Binding Revealed by Crystal Structures of HLA-B*5101 Complexed with HIV Immunodominant Epitopes
inferredcites →https://doi.org/10.4049/jimmunol.177.6.3884openalex-snapshot
Crystallographic Structure of a Rheumatoid Arthritis MHC Susceptibility Allele, HLA-DR1 (DRB1*0101), Complexed with the Immunodominant Determinant of Human Type II Collagen
inferredcites →https://doi.org/10.4161/hv.7.6.15197openalex-snapshot
Human pathogenic hantaviruses and prevention of infection
inferredcites →https://doi.org/10.4269/ajtmh.12-0334openalex-snapshot
Hantavirus Fever without Pulmonary Syndrome in Panama
inferredcites →https://doi.org/10.4269/ajtmh.1995.52.117openalex-snapshot
Identification of a New North American Hantavirus that Causes Acute Pulmonary Insufficiency
inferredcites →https://doi.org/10.4269/ajtmh.2006.75.994openalex-snapshot
GEOGRAPHICAL DISTRIBUTION OF HANTAVIRUSES IN THAILAND AND POTENTIAL HUMAN HEALTH SIGNIFICANCE OF THAILAND VIRUS
inferredcites →https://doi.org/10.7589/0090-3558-41.1.1openalex-snapshot
EPIZOOTIOLOGY OF SIN NOMBRE AND EL MORO CANYON HANTAVIRUSES, SOUTHEASTERN COLORADO, 1995–2000
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Serological Evidence of Thailand Virus-Related Hantavirus Infection among Suspected Leptospirosis Patients in Kandy, Sri Lanka

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10989-022-10431-zopenalex-snapshot
An Immunoinformatics Prediction of Novel Multi-Epitope Vaccines Candidate Against Surface Antigens of Nipah Virus
inferred← citeshttps://doi.org/10.1016/j.imu.2021.100764openalex-snapshot
Designing multi-epitope subunit vaccine for ocular trachoma infection using Chlamydia trachomatis polymorphic membrane proteins G
inferred← citeshttps://doi.org/10.3390/vaccines10030378openalex-snapshot
Design of a Multi-Epitopes Vaccine against Hantaviruses: An Immunoinformatics and Molecular Modelling Approach
inferred← citeshttps://doi.org/10.3390/vaccines10111785openalex-snapshot
Mapping Potential Vaccine Candidates Predicted by VaxiJen for Different Viral Pathogens between 2017–2021—A Scoping Review
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