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Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-0-387-21706-2openalex-snapshot
Modern Applied Statistics with S
inferredcites →https://doi.org/10.1007/978-0-387-21706-2_14openalex-snapshot
Time Series Analysis
inferredcites →https://doi.org/10.1016/j.cell.2014.02.019openalex-snapshot
A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.04.004openalex-snapshot
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
inferredcites →https://doi.org/10.1016/j.cell.2017.02.007openalex-snapshot
A Phase Separation Model for Transcriptional Control
inferredcites →https://doi.org/10.1016/j.cell.2018.05.024openalex-snapshot
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
inferredcites →https://doi.org/10.1016/j.cell.2019.08.037openalex-snapshot
Organization of Chromatin by Intrinsic and Regulated Phase Separation
inferredcites →https://doi.org/10.1016/j.celrep.2016.04.085openalex-snapshot
Formation of Chromosomal Domains by Loop Extrusion
inferredcites →https://doi.org/10.1016/j.coisb.2016.12.005openalex-snapshot
Modeling cancer rearrangement landscapes
inferredcites →https://doi.org/10.1016/j.molcel.2013.02.011openalex-snapshot
The Hierarchy of the 3D Genome
inferredcites →https://doi.org/10.1038/nature08497openalex-snapshot
An oestrogen-receptor-α-bound human chromatin interactome
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature11279openalex-snapshot
The long-range interaction landscape of gene promoters
inferredcites →https://doi.org/10.1038/nature12593openalex-snapshot
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
inferredcites →https://doi.org/10.1038/nature13379openalex-snapshot
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
inferredcites →https://doi.org/10.1038/nature13986openalex-snapshot
Topologically associating domains are stable units of replication-timing regulation
inferredcites →https://doi.org/10.1038/nature19800openalex-snapshot
Formation of new chromatin domains determines pathogenicity of genomic duplications
inferredcites →https://doi.org/10.1038/nature20158openalex-snapshot
Capturing pairwise and multi-way chromosomal conformations using chromosomal walks
inferredcites →https://doi.org/10.1038/nature21411openalex-snapshot
Complex multi-enhancer contacts captured by genome architecture mapping
inferredcites →https://doi.org/10.1038/nbt.2727openalex-snapshot
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
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Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
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An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data
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Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
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The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies
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Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
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Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
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HiChIP: efficient and sensitive analysis of protein-directed genome architecture
inferredcites →https://doi.org/10.1038/s41467-017-02525-wopenalex-snapshot
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Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer
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Chromatin accessibility and the regulatory epigenome
inferredcites →https://doi.org/10.1038/s41586-019-0949-1openalex-snapshot
Multiplex chromatin interactions with single-molecule precision
inferredcites →https://doi.org/10.1038/s41586-019-1182-7openalex-snapshot
Transcription factors and 3D genome conformation in cell-fate decisions
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An open resource for accurately benchmarking small variant and reference calls
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Enhancer hubs and loop collisions identified from single-allele topologies
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Integrative detection and analysis of structural variation in cancer genomes
inferredcites →https://doi.org/10.1038/s41588-018-0253-2openalex-snapshot
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
inferredcites →https://doi.org/10.1038/s41588-019-0462-3openalex-snapshot
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
inferredcites →https://doi.org/10.1038/s41588-019-0476-xopenalex-snapshot
A genome disconnect
inferredcites →https://doi.org/10.1038/s41592-019-0502-zopenalex-snapshot
Joint profiling of DNA methylation and chromatin architecture in single cells
inferredcites →https://doi.org/10.1038/s41592-019-0669-3openalex-snapshot
Fast and accurate long-read assembly with wtdbg2
inferredcites →https://doi.org/10.1073/pnas.1609643113openalex-snapshot
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
inferredcites →https://doi.org/10.1093/bioinformatics/bts480openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btz540openalex-snapshot
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inferredcites →https://doi.org/10.1093/imanum/drs019openalex-snapshot
A fast algorithm for matrix balancing
inferredcites →https://doi.org/10.1101/481283openalex-snapshot
The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state
inferredcites →https://doi.org/10.1101/836296openalex-snapshot
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inferredcites →https://doi.org/10.1101/cshperspect.a000653openalex-snapshot
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inferredcites →https://doi.org/10.1101/cshperspect.a019356openalex-snapshot
Long-Range Chromatin Interactions
inferredcites →https://doi.org/10.1101/gr.214270.116openalex-snapshot
Fast and accurate de novo genome assembly from long uncorrected reads
inferredcites →https://doi.org/10.1101/gr.221028.117openalex-snapshot
SvABA: genome-wide detection of structural variants and indels by local assembly
inferredcites →https://doi.org/10.1126/science.1067799openalex-snapshot
Capturing Chromosome Conformation
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1236083openalex-snapshot
Organization of the Mitotic Chromosome
inferredcites →https://doi.org/10.1126/science.aaf4382openalex-snapshot
Liquid phase condensation in cell physiology and disease
inferredcites →https://doi.org/10.1126/science.aat5641openalex-snapshot
Three-dimensional genome structures of single diploid human cells
inferredcites →https://doi.org/10.1158/2159-8290.cd-15-0370openalex-snapshot
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inferredcites →https://doi.org/10.1158/2159-8290.cd-17-0993openalex-snapshot
MYC Drives a Subset of High-Risk Pediatric Neuroblastomas and Is Activated through Mechanisms Including Enhancer Hijacking and Focal Enhancer Amplification
inferredcites →https://doi.org/10.1186/s12864-015-1236-7openalex-snapshot
Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C
inferredcites →https://doi.org/10.1371/journal.pcbi.1006994openalex-snapshot
Modern technologies and algorithms for scaffolding assembled genomes
inferredcites →https://doi.org/10.1371/journal.pcbi.1007273openalex-snapshot
Integrating Hi-C links with assembly graphs for chromosome-scale assembly

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ps.8949openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biocel.2020.105799openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.csbj.2022.07.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.gde.2020.10.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.heliyon.2022.e11023openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molcel.2020.10.033openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41467-023-41265-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41477-024-01655-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41586-022-04601-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41587-021-01108-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41596-021-00543-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41597-025-04490-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41597-026-07426-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1071/an22479openalex-snapshot
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inferred← citeshttps://doi.org/10.1073/pnas.2023801118openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bib/bbab316openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bib/bbad072openalex-snapshot
A comprehensive review of bioinformatics tools for chromatin loop calling
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac705openalex-snapshot
3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion
inferred← citeshttps://doi.org/10.1093/hr/uhae313openalex-snapshot
A full genome assembly reveals drought stress effects on gene expression and metabolite profiles in blackcurrant (Ribes nigrum L.)
inferred← citeshttps://doi.org/10.1101/2020.11.03.354068openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2022.04.21.489011openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2022.10.27.514140openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.05.29.596528openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/gr.280041.124openalex-snapshot
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inferred← citeshttps://doi.org/10.1109/tcbb.2024.3477909openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/mec.16141openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/pbi.13811openalex-snapshot
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inferred← citeshttps://doi.org/10.1146/annurev-biodatasci-102521-012018openalex-snapshot
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inferred← citeshttps://doi.org/10.1146/annurev-genet-071719-020519openalex-snapshot
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inferred← citeshttps://doi.org/10.1360/ssv-2023-0068openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pcbi.1009669openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.ppat.1013392openalex-snapshot
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inferred← citeshttps://doi.org/10.17504/protocols.io.rm7vz9mmrgx1/v1openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fgene.2022.1037134openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/biology10080732openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms25147824openalex-snapshot
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inferred← citeshttps://doi.org/10.48550/arxiv.2105.01041openalex-snapshot
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inferred← citeshttps://doi.org/10.48550/arxiv.2309.08241openalex-snapshot
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inferred← citeshttps://doi.org/10.64898/2026.02.23.707580openalex-snapshot
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inferred← citeshttps://doi.org/10.64898/2026.08.30.748130openalex-snapshot
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inferred← citeshttps://doi.org/10.64898/2026.09.15.751767openalex-snapshot
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inferred← citeshttps://doi.org/10.7554/elife.87868openalex-snapshot
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inferred← citeshttps://doi.org/10.7554/elife.87868.1openalex-snapshot
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inferred← citeshttps://doi.org/10.7554/elife.87868.2openalex-snapshot
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inferred← citeshttps://doi.org/10.7554/elife.87868.3openalex-snapshot
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inferred← citeshttps://doi.org/10.7554/elife.87868.4openalex-snapshot
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inferred← citeshttps://doi.org/10.7717/peerj.13056openalex-snapshot
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