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annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Recurrent pre‐existing and acquired DNA copy number alterations, including focal TERT gains, in neuroblastoma central nervous system metastases
inferredcites →https://doi.org/10.1007/s00401-007-0243-4openalex-snapshot
The 2007 WHO Classification of Tumours of the Central Nervous System
inferredcites →https://doi.org/10.1007/s00401-016-1545-1openalex-snapshot
The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary
inferredcites →https://doi.org/10.1007/s00401-018-1864-5openalex-snapshot
Novel FGFR2-INA fusion identified in two low-grade mixed neuronal-glial tumors drives oncogenesis via MAPK and PI3K/mTOR pathway activation
inferredcites →https://doi.org/10.1007/s11910-017-0722-5openalex-snapshot
New Molecular Considerations for Glioma: IDH, ATRX, BRAF, TERT, H3 K27M
inferredcites →https://doi.org/10.1016/0165-4608(84)90003-7openalex-snapshot
Translocation involving chromosome 22 in Ewing's Sarcoma. A cytogenetic study of four fresh tumors
inferredcites →https://doi.org/10.1016/j.canlet.2014.11.057openalex-snapshot
Activation of human telomerase reverse transcriptase through gene fusion in clear cell sarcoma of the kidney
inferredcites →https://doi.org/10.1016/j.cell.2016.01.015openalex-snapshot
New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs
inferredcites →https://doi.org/10.1016/j.cell.2018.03.035openalex-snapshot
Oncogenic Signaling Pathways in The Cancer Genome Atlas
inferredcites →https://doi.org/10.1016/j.cell.2018.09.045openalex-snapshot
The Human Transcription Factors
inferredcites →https://doi.org/10.1016/j.celrep.2018.03.050openalex-snapshot
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
inferredcites →https://doi.org/10.1016/j.celrep.2019.09.071openalex-snapshot
Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design
inferredcites →https://doi.org/10.1016/j.gendis.2019.08.002openalex-snapshot
Gene fusions and chimeric RNAs, and their implications in cancer
inferredcites →https://doi.org/10.1038/nature11327openalex-snapshot
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
inferredcites →https://doi.org/10.1038/nbt.3772openalex-snapshot
Toil enables reproducible, open source, big biomedical data analyses
inferredcites →https://doi.org/10.1038/ng.2764openalex-snapshot
The Cancer Genome Atlas Pan-Cancer analysis project
inferredcites →https://doi.org/10.1038/ng.2849openalex-snapshot
Fusion of TTYH1 with the C19MC microRNA cluster drives expression of a brain-specific DNMT3B isoform in the embryonal brain tumor ETMR
inferredcites →https://doi.org/10.1038/ng.3438openalex-snapshot
TERT rearrangements are frequent in neuroblastoma and identify aggressive tumors
inferredcites →https://doi.org/10.1038/ng.3500openalex-snapshot
MYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism
inferredcites →https://doi.org/10.1038/nprot.2009.97openalex-snapshot
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
inferredcites →https://doi.org/10.1038/onc.2017.276openalex-snapshot
CRAF gene fusions in pediatric low-grade gliomas define a distinct drug response based on dimerization profiles
inferredcites →https://doi.org/10.1038/s41568-018-0060-1openalex-snapshot
The COSMIC Cancer Gene Census: describing genetic dysfunction across all human cancers
inferredcites →https://doi.org/10.1038/srep21597openalex-snapshot
Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data
inferredcites →https://doi.org/10.1073/pnas.1300252110openalex-snapshot
Genomic analysis of diffuse pediatric low-grade gliomas identifies recurrent oncogenic truncating rearrangements in the transcription factor MYBL1
inferredcites →https://doi.org/10.1093/bioinformatics/bti525openalex-snapshot
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btt445openalex-snapshot
Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions
inferredcites →https://doi.org/10.1093/bioinformatics/btx329openalex-snapshot
chimeraviz: a tool for visualizing chimeric RNA
inferredcites →https://doi.org/10.1093/nar/gks937openalex-snapshot
TSGene: a web resource for tumor suppressor genes
inferredcites →https://doi.org/10.1093/nar/gkv1268openalex-snapshot
TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes
inferredcites →https://doi.org/10.1093/nar/gkx1018openalex-snapshot
TumorFusions: an integrative resource for cancer-associated transcript fusions
inferredcites →https://doi.org/10.1093/neuonc/now067.18openalex-snapshot
PNR-21FOUR NEW BRAIN TUMOR ENTITIES EMERGE FROM MOLECULAR CLASSIFICATION OF CNS PNETs
inferredcites →https://doi.org/10.1093/neuonc/noz192openalex-snapshot
Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium
inferredcites →https://doi.org/10.1097/pap.0000000000000049openalex-snapshot
The Evolving Molecular Genetics of Low-grade Glioma
inferredcites →https://doi.org/10.1101/080903openalex-snapshot
AGFusion: annotate and visualize gene fusions
inferredcites →https://doi.org/10.1101/120295openalex-snapshot
STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq
inferredcites →https://doi.org/10.1126/science.1075762openalex-snapshot
The Protein Kinase Complement of the Human Genome
inferredcites →https://doi.org/10.1126/science.1213847openalex-snapshot
Reproducible Research in Computational Science
inferredcites →https://doi.org/10.1126/science.aah6168openalex-snapshot
Enhancing reproducibility for computational methods
inferredcites →https://doi.org/10.1158/0008-5472.can-08-2097openalex-snapshot
Tandem Duplication Producing a Novel Oncogenic BRAF Fusion Gene Defines the Majority of Pilocytic Astrocytomas
inferredcites →https://doi.org/10.1182/blood-2009-11-256131openalex-snapshot
Presence of the P2RY8-CRLF2 rearrangement is associated with a poor prognosis in non–high-risk precursor B-cell acute lymphoblastic leukemia in children treated according to the ALL-BFM 2000 protocol
inferredcites →https://doi.org/10.1186/1471-2164-15-824openalex-snapshot
Open-access synthetic spike-in mRNA-seq data for cancer gene fusions
inferredcites →https://doi.org/10.1186/s12918-014-0097-zopenalex-snapshot
Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer
inferredcites →https://doi.org/10.1186/s13059-019-1842-9openalex-snapshot
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
inferredcites →https://doi.org/10.1186/s40478-018-0630-1openalex-snapshot
Significance of molecular classification of ependymomas: C11orf95-RELA fusion-negative supratentorial ependymomas are a heterogeneous group of tumors
inferredcites →https://doi.org/10.1371/journal.pcbi.1006266openalex-snapshot
FusionPathway: Prediction of pathways and therapeutic targets associated with gene fusions in cancer
inferredcites →https://doi.org/10.1371/journal.pgen.1004475openalex-snapshot
The Genomic Landscape of the Ewing Sarcoma Family of Tumors Reveals Recurrent STAG2 Mutation
inferredcites →https://doi.org/10.1371/journal.pone.0013284openalex-snapshot
Expression of Conjoined Genes: Another Mechanism for Gene Regulation in Eukaryotes
inferredcites →https://doi.org/10.1371/journal.pone.0196588openalex-snapshot
FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer
inferredcites →https://doi.org/10.18632/oncotarget.22098openalex-snapshot
The enigmatic role(s) of P2RY8-CRLF2
inferredcites →https://doi.org/10.3389/fgene.2017.00137openalex-snapshot
confFuse: High-Confidence Fusion Gene Detection across Tumor Entities
inferredcites →https://doi.org/10.3390/genes9010040openalex-snapshot
Transcriptional-Readthrough RNAs Reflect the Phenomenon of “A Gene Contains Gene(s)” or “Gene(s) within a Gene” in the Human Genome, and Thus Are Not Chimeric RNAs
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