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Gene expression profiles based flux balance model to predict the carbon source for Bacillus subtilis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s00253-015-7085-0openalex-snapshot
Metabolic flux analysis model for optimizing xylose conversion into ethanol by the natural C5-fermenting yeast Candida shehatae
inferredcites →https://doi.org/10.1007/s10295-015-1585-xopenalex-snapshot
Methods and advances in metabolic flux analysis: a mini-review
inferredcites →https://doi.org/10.1007/s10295-016-1880-1openalex-snapshot
Enhancement of rapamycin production by metabolic engineering in Streptomyces hygroscopicus based on genome-scale metabolic model
inferredcites →https://doi.org/10.1016/j.bpj.2010.12.3707openalex-snapshot
Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
inferredcites →https://doi.org/10.1016/j.semcancer.2013.05.001openalex-snapshot
Metabolic network modeling approaches for investigating the “hungry cancer”
inferredcites →https://doi.org/10.1016/j.ymben.2003.09.002openalex-snapshot
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
inferredcites →https://doi.org/10.1016/s0006-3495(02)75297-1openalex-snapshot
Extreme Pathways and Kirchhoff's Second Law
inferredcites →https://doi.org/10.1038/msb.2013.66openalex-snapshot
Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis
inferredcites →https://doi.org/10.1038/nbt.1711openalex-snapshot
Large-scale in silico modeling of metabolic interactions between cell types in the human brain
inferredcites →https://doi.org/10.1038/ncomms15393openalex-snapshot
Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis
inferredcites →https://doi.org/10.1038/s41598-017-14168-4openalex-snapshot
The Staphylococcus aureus extracellular matrix protein (Emp) has a fibrous structure and binds to different extracellular matrices
inferredcites →https://doi.org/10.1038/s41598-019-39920-wopenalex-snapshot
Understanding carbon utilization routes between high and low starch-producing cultivars of cassava through Flux Balance Analysis
inferredcites →https://doi.org/10.1038/srep10738openalex-snapshot
Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism
inferredcites →https://doi.org/10.1074/jbc.275.19.14031openalex-snapshot
Two Glyceraldehyde-3-phosphate Dehydrogenases with Opposite Physiological Roles in a Nonphotosynthetic Bacterium
inferredcites →https://doi.org/10.1074/jbc.m109.061747openalex-snapshot
Metabolic Fluxes during Strong Carbon Catabolite Repression by Malate in Bacillus subtilis
inferredcites →https://doi.org/10.1093/bioinformatics/btn654openalex-snapshot
bioDBnet: the biological database network
inferredcites →https://doi.org/10.1093/bioinformatics/btq602openalex-snapshot
iMAT: an integrative metabolic analysis tool
inferredcites →https://doi.org/10.1093/cid/ciz109openalex-snapshot
Clinical and Microbiologic Variables Predictive of Orthopedic Complications Following Staphylococcus aureus Acute Hematogenous Osteoarticular Infections in Children
inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot
KEGG: Kyoto Encyclopedia of Genes and Genomes
inferredcites →https://doi.org/10.1093/nar/gkh131openalex-snapshot
UniProt: the Universal Protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkv1049openalex-snapshot
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
inferredcites →https://doi.org/10.1093/nar/gkv1070openalex-snapshot
KEGG as a reference resource for gene and protein annotation
inferredcites →https://doi.org/10.1093/nar/gkw1092openalex-snapshot
KEGG: new perspectives on genomes, pathways, diseases and drugs
inferredcites →https://doi.org/10.1093/nar/gky092openalex-snapshot
UniProt: the universal protein knowledgebase
inferredcites →https://doi.org/10.1097/inf.0000000000001503openalex-snapshot
The Influence of the Route of Antibiotic Administration, Methicillin Susceptibility, Vancomycin Duration and Serum Trough Concentration on Outcomes of Pediatric Staphylococcus aureus Bacteremic Osteoarticular Infection
inferredcites →https://doi.org/10.1099/jmm.0.000859openalex-snapshot
Staphylococcus aureus osteoarticular infections in children: an 8-year review of molecular microbiology, antibiotic resistance and clinical characteristics
inferredcites →https://doi.org/10.1111/1462-2920.13454openalex-snapshot
YsbA and LytST are essential for pyruvate utilization in Bacillus subtilis
inferredcites →https://doi.org/10.1111/1574-6968.12041openalex-snapshot
Malate metabolism inBacillus subtilis: distinct roles for three classes of malate-oxidizing enzymes
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/science.1206848openalex-snapshot
Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
inferredcites →https://doi.org/10.1126/science.1206871openalex-snapshot
Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
inferredcites →https://doi.org/10.1128/cmr.00084-17openalex-snapshot
Staphylococcal Osteomyelitis: Disease Progression, Treatment Challenges, and Future Directions
inferredcites →https://doi.org/10.1146/annurev.micro.54.1.849openalex-snapshot
Regulation of Carbon Catabolism inBacillusSpecies
inferredcites →https://doi.org/10.1186/s12918-015-0217-4openalex-snapshot
Optimization of lipid production with a genome-scale model of Yarrowia lipolytica
inferredcites →https://doi.org/10.1186/s12918-017-0438-9openalex-snapshot
Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes
inferredcites →https://doi.org/10.1371/journal.pcbi.1000082openalex-snapshot
Context-Specific Metabolic Networks Are Consistent with Experiments
inferredcites →https://doi.org/10.1371/journal.pcbi.1005244openalex-snapshot
Utility and Limitations of Using Gene Expression Data to Identify Functional Associations
inferredcites →https://doi.org/10.1371/journal.pcbi.1005457openalex-snapshot
Transcriptomics technologies
inferredcites →https://doi.org/10.1371/journal.pcbi.1006584openalex-snapshot
Multi-scale computational study of the Warburg effect, reverse Warburg effect and glutamine addiction in solid tumors
inferredcites →https://doi.org/10.1371/journal.pone.0169565openalex-snapshot
Bad to the Bone: On In Vitro and Ex Vivo Microbial Biofilm Ability to Directly Destroy Colonized Bone Surfaces without Participation of Host Immunity or Osteoclastogenesis
inferredcites →https://doi.org/10.3390/vetsci6030059openalex-snapshot
Application of Transcriptomics to Enhance Early Diagnostics of Mycobacterial Infections, with an Emphasis on Mycobacterium avium ssp. paratuberculosis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41596-021-00593-3openalex-snapshot
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
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