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Evaluation of primer pairs for microbiome profiling across a food chain from soils to humans within the One Health framework
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-3-540-74686-7openalex-snapshot
Computational Many-Particle Physics
inferredcites →https://doi.org/10.1007/s002480000087openalex-snapshot
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
inferredcites →https://doi.org/10.1016/j.bdq.2014.11.002openalex-snapshot
Multi-template polymerase chain reaction
inferredcites →https://doi.org/10.1016/j.cell.2005.05.007openalex-snapshot
An Immunomodulatory Molecule of Symbiotic Bacteria Directs Maturation of the Host Immune System
inferredcites →https://doi.org/10.1016/j.cell.2017.09.022openalex-snapshot
A Gut Microbial Mimic that Hijacks Diabetogenic Autoreactivity to Suppress Colitis
inferredcites →https://doi.org/10.1016/j.chom.2015.04.009openalex-snapshot
Microbiota and Host Nutrition across Plant and Animal Kingdoms
inferredcites →https://doi.org/10.1016/j.immuni.2017.07.011openalex-snapshot
Nlrp6- and ASC-Dependent Inflammasomes Do Not Shape the Commensal Gut Microbiota Composition
inferredcites →https://doi.org/10.1016/j.jare.2019.03.006openalex-snapshot
What is new and relevant for sequencing-based microbiome research? A mini-review
inferredcites →https://doi.org/10.1016/j.jare.2019.04.008openalex-snapshot
Novel insights into plant-associated archaea and their functioning in arugula (Eruca sativa Mill.)
inferredcites →https://doi.org/10.1016/j.scitotenv.2019.02.091openalex-snapshot
One Health - Cycling of diverse microbial communities as a connecting force for soil, plant, animal, human and ecosystem health
inferredcites →https://doi.org/10.1016/j.syapm.2017.11.008openalex-snapshot
Comparison of DNA extraction methods for human gut microbial community profiling
inferredcites →https://doi.org/10.1016/j.tim.2017.07.004openalex-snapshot
Archaea Are Interactive Components of Complex Microbiomes
inferredcites →https://doi.org/10.1038/ismej.2011.145openalex-snapshot
Spotlight on the Thaumarchaeota
inferredcites →https://doi.org/10.1038/ismej.2011.41openalex-snapshot
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
inferredcites →https://doi.org/10.1038/nature24621openalex-snapshot
A communal catalogue reveals Earth’s multiscale microbial diversity
inferredcites →https://doi.org/10.1038/ncomms9292openalex-snapshot
The outer mucus layer hosts a distinct intestinal microbial niche
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/s41396-019-0418-8openalex-snapshot
Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution
inferredcites →https://doi.org/10.1038/s41598-018-24573-yopenalex-snapshot
The impact of storage buffer, DNA extraction method, and polymerase on microbial analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btr087openalex-snapshot
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
inferredcites →https://doi.org/10.1093/bioinformatics/bty113openalex-snapshot
Updating the 97% identity threshold for 16S ribosomal RNA OTUs
inferredcites →https://doi.org/10.1093/nar/gkq873openalex-snapshot
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
inferredcites →https://doi.org/10.1093/nar/gks808openalex-snapshot
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
inferredcites →https://doi.org/10.1111/1462-2920.13023openalex-snapshot
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
inferredcites →https://doi.org/10.1111/lam.12038openalex-snapshot
Comparison of commercial kits for the extraction of DNA from paddy soils
inferredcites →https://doi.org/10.1128/mbio.01294-18openalex-snapshot
Drivers of Microbiome Biodiversity: A Review of General Rules, Feces, and Ignorance
inferredcites →https://doi.org/10.1128/msystems.00009-15openalex-snapshot
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
inferredcites →https://doi.org/10.1128/msystems.00163-18openalex-snapshot
Performance of Microbiome Sequence Inference Methods in Environments with Varying Biomass
inferredcites →https://doi.org/10.1128/msystems.00271-18openalex-snapshot
Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota Profiling
inferredcites →https://doi.org/10.1186/1471-2180-7-108openalex-snapshot
Bacterial flora-typing with targeted, chip-based Pyrosequencing
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1371/journal.pone.0056329openalex-snapshot
Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.ppat.1004833openalex-snapshot
Archaea in and on the Human Body: Health Implications and Future Directions
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3354/ame01753openalex-snapshot
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
inferredcites →https://doi.org/10.3389/fcimb.2019.00197openalex-snapshot
Evaluation of Methods for the Extraction of Microbial DNA From Vaginal Swabs Used for Microbiome Studies
inferredcites →https://doi.org/10.3389/fmicb.2016.00650openalex-snapshot
Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies
inferredcites →https://doi.org/10.3389/fmicb.2017.00494openalex-snapshot
Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys
inferredcites →https://doi.org/10.3389/fmicb.2019.00821openalex-snapshot
The Impact of DNA Extraction Methods on Stool Bacterial and Fungal Microbiota Community Recovery
inferredcites →https://doi.org/10.3389/fnut.2018.00090openalex-snapshot
How Can We Define “Optimal Microbiota?”: A Comparative Review of Structure and Functions of Microbiota of Animals, Fish, and Plants in Agriculture
inferredcites →https://doi.org/10.3389/fpubh.2018.00235openalex-snapshot
One Health Relationships Between Human, Animal, and Environmental Microbiomes: A Mini-Review
inferredcites →https://doi.org/10.3389/fvets.2018.00014openalex-snapshot
The One Health Concept: 10 Years Old and a Long Road Ahead
inferredcites →https://doi.org/10.3390/foods7120195openalex-snapshot
One Health, Fermented Foods, and Gut Microbiota
inferredcites →https://doi.org/10.3929/ethz-b-000105397openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.120128openalex-snapshot
Harmful algal blooms in Cayuga lake, NY: From microbiome analysis to eDNA monitoring
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.09.006openalex-snapshot
Sediment-associated bacterial community and predictive functionalities are influenced by choice of 16S ribosomal RNA hypervariable region(s): An amplicon-based diversity study
inferred← citeshttps://doi.org/10.1038/s41598-022-23266-xopenalex-snapshot
Influential factors of saliva microbiota composition
inferred← citeshttps://doi.org/10.1094/pbiomes-07-20-0055-ropenalex-snapshot
Comparing DNA Extraction and 16S rRNA Gene Amplification Methods for Plant-Associated Bacterial Communities
inferred← citeshttps://doi.org/10.1101/2021.01.27.428413openalex-snapshot
Diversity, activity and abundance of benthic microbes in the southeastern Mediterranean Sea: A baseline for monitoring
inferred← citeshttps://doi.org/10.1111/1462-2920.15327openalex-snapshot
Active microbial ecosystem in Iron‐Age tombs of the Etruscan civilization
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1323148openalex-snapshot
Microbial community composition of terrestrial habitats in East Antarctica with a focus on microphototrophs
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