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Cis-regulatory analysis of Onecut1 expression in fate-restricted retinal progenitor cells
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1097-4695(19980915)36:4<485::aid-neu3>3.3.co;2-uopenalex-snapshot
neuroD induces photoreceptor cell overproduction in vivo and de novo generation in vitro
inferredcites →https://doi.org/10.1002/ar.1092120215openalex-snapshot
Cell differentiation in the retina of the mouse
inferredcites →https://doi.org/10.1002/dvdy.24638openalex-snapshot
Integral bHLH factor regulation of cell cycle exit and RGC differentiation
inferredcites →https://doi.org/10.1006/dbio.1994.1346openalex-snapshot
Clonal Analysis in the Chicken Retina Reveals Tangential Dispersion of Clonally Related Cells
inferredcites →https://doi.org/10.1006/mcne.1999.0765openalex-snapshot
Misexpression of cNSCL1 Disrupts Retinal Development
inferredcites →https://doi.org/10.1016/j.brainres.2018.03.013openalex-snapshot
bHLH transcription factors in neural development, disease, and reprogramming
inferredcites →https://doi.org/10.1016/j.celrep.2013.03.014openalex-snapshot
Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape
inferredcites →https://doi.org/10.1016/j.devcel.2013.06.005openalex-snapshot
Otx2 and Onecut1 Promote the Fates of Cone Photoreceptors and Horizontal Cells and Repress Rod Photoreceptors
inferredcites →https://doi.org/10.1016/j.devcel.2014.07.018openalex-snapshot
A Gene Regulatory Network Controls the Binary Fate Decision of Rod and Bipolar Cells in the Vertebrate Retina
inferredcites →https://doi.org/10.1016/j.semcdb.2003.09.005openalex-snapshot
Retinal cell fate determination and bHLH factors
inferredcites →https://doi.org/10.1016/j.ydbio.2005.05.041openalex-snapshot
The role of combinational coding by homeodomain and bHLH transcription factors in retinal cell fate specification
inferredcites →https://doi.org/10.1016/j.ydbio.2010.02.002openalex-snapshot
Neurog2 controls the leading edge of neurogenesis in the mammalian retina
inferredcites →https://doi.org/10.1016/j.ydbio.2018.06.023openalex-snapshot
Fate-restricted retinal progenitor cells adopt a molecular profile and spatial position distinct from multipotent progenitor cells
inferredcites →https://doi.org/10.1016/s0959-4388(99)80005-1openalex-snapshot
The roles of intrinsic and extrinsic cues and bHLH genes in the determination of retinal cell fates
inferredcites →https://doi.org/10.1038/328131a0openalex-snapshot
A common progenitor for neurons and glia persists in rat retina late in development
inferredcites →https://doi.org/10.1038/nmeth.2019openalex-snapshot
Fiji: an open-source platform for biological-image analysis
inferredcites →https://doi.org/10.1038/nmeth.2688openalex-snapshot
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
inferredcites →https://doi.org/10.1038/nn1155openalex-snapshot
Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development
inferredcites →https://doi.org/10.1038/s41598-019-40055-1openalex-snapshot
Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4
inferredcites →https://doi.org/10.1038/s41598-019-45750-7openalex-snapshot
Lineage tracing analysis of cone photoreceptor associated cis-regulatory elements in the developing chicken retina
inferredcites →https://doi.org/10.1073/pnas.0709979104openalex-snapshot
Retinal progenitor cells can produce restricted subsets of horizontal cells
inferredcites →https://doi.org/10.1073/pnas.1203138109openalex-snapshot
Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates
inferredcites →https://doi.org/10.1073/pnas.1303551110openalex-snapshot
Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors
inferredcites →https://doi.org/10.1073/pnas.1405354111openalex-snapshot
Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development
inferredcites →https://doi.org/10.1073/pnas.2235688100openalex-snapshot
Electroporation and RNA interference in the rodent retina in vivo and in vitro
inferredcites →https://doi.org/10.1074/jbc.m400871200openalex-snapshot
Requirement of Multiple Basic Helix-Loop-Helix Genes for Retinal Neuronal Subtype Specification
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq281openalex-snapshot
Manipulation of FASTQ data with Galaxy
inferredcites →https://doi.org/10.1093/bioinformatics/btq351openalex-snapshot
BigWig and BigBed: enabling browsing of large distributed datasets
inferredcites →https://doi.org/10.1093/nar/gkh355openalex-snapshot
ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
inferredcites →https://doi.org/10.1093/nar/gky379openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
inferredcites →https://doi.org/10.1093/nar/gkz268openalex-snapshot
The EMBL-EBI search and sequence analysis tools APIs in 2019
inferredcites →https://doi.org/10.1101/538710openalex-snapshot
Single cell profiling of CRISPR/Cas9-induced OTX2 deficient retinas reveals fate switch from restricted progenitors
inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot
BLAT —The BLAST -Like Alignment Tool
inferredcites →https://doi.org/10.1186/1471-213x-8-101openalex-snapshot
Thyroid hormone components are expressed in three sequential waves during development of the chick retina
inferredcites →https://doi.org/10.1186/gb-2007-8-2-r24openalex-snapshot
Quantifying similarity between motifs
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/s13064-018-0121-xopenalex-snapshot
Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1
inferredcites →https://doi.org/10.1242/dev.027607openalex-snapshot
Defining retinal progenitor cell competence in Xenopus laevis by clonal analysis
inferredcites →https://doi.org/10.1242/dev.085886openalex-snapshot
Reprogramming amacrine and photoreceptor progenitors into retinal ganglion cells by replacing Neurod1 with Atoh7
inferredcites →https://doi.org/10.1242/dev.184432openalex-snapshot
Enhancer transcription identifies cis -regulatory elements for photoreceptor cell types
inferredcites →https://doi.org/10.1371/journal.pone.0013739openalex-snapshot
Analysis of Thyroid Response Element Activity during Retinal Development
inferredcites →https://doi.org/10.1523/jneurosci.0116-13.2013openalex-snapshot
Onecut1 Is Essential for Horizontal Cell Genesis and Retinal Integrity
inferredcites →https://doi.org/10.1523/jneurosci.4832-07.2008openalex-snapshot
NeuroD1 Regulates Expression of Thyroid Hormone Receptor β2 and Cone Opsins in the Developing Mouse Retina
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41389-022-00409-3openalex-snapshot
MYCN induces cell-specific tumorigenic growth in RB1-proficient human retinal organoid and chicken retina models of retinoblastoma
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