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New, easy, quick and efficient DNA replication timing analysis by high-throughput approaches

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-94-011-5550-2_13openalex-snapshot

Large-Scale Chromatin Structure

inferredcites →https://doi.org/10.1016/j.cell.2011.02.013openalex-snapshot

Hallmarks of Cancer: The Next Generation

inferredcites →https://doi.org/10.1016/j.gdata.2016.07.003openalex-snapshot

Characterization of the replication timing program of 6 human model cell lines

inferredcites →https://doi.org/10.1016/j.molcel.2016.05.007openalex-snapshot

Replicating Large Genomes: Divide and Conquer

inferredcites →https://doi.org/10.1016/j.ymeth.2012.05.009openalex-snapshot

Genome-wide analysis of replication timing in mammalian cells: Troubleshooting problems encountered when comparing different cell types

inferredcites →https://doi.org/10.1038/emboj.2012.214openalex-snapshot

Mouse Rif1 is a key regulator of the replication‐timing programme in mammalian cells

inferredcites →https://doi.org/10.1038/nmeth.2659openalex-snapshot

Error bars

inferredcites →https://doi.org/10.1038/nprot.2011.328openalex-snapshot

Genome-scale analysis of replication timing: from bench to bioinformatics

inferredcites →https://doi.org/10.1038/nprot.2017.148openalex-snapshot

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq

inferredcites →https://doi.org/10.1038/nrg.2017.46openalex-snapshot

The impact of replication stress on replication dynamics and DNA damage in vertebrate cells

inferredcites →https://doi.org/10.1038/s41467-018-03539-8openalex-snapshot

Chromatin conformation regulates the coordination between DNA replication and transcription

inferredcites →https://doi.org/10.1073/pnas.0912402107openalex-snapshot

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

inferredcites →https://doi.org/10.1083/jcb.201007125openalex-snapshot

Cell fate transitions and the replication timing decision point

inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot

limma powers differential expression analyses for RNA-sequencing and microarray studies

inferredcites →https://doi.org/10.1093/nar/gky379openalex-snapshot

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

inferredcites →https://doi.org/10.1096/fasebj.23.1_supplement.481.1openalex-snapshot

Global re‐organization of replication domains during embryonic stem cell differentiation

inferredcites →https://doi.org/10.1101/cshperspect.a010132openalex-snapshot

DNA Replication Timing

inferredcites →https://doi.org/10.1101/gr.099655.109openalex-snapshot

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

inferredcites →https://doi.org/10.1101/gr.218602.116openalex-snapshot

DNA replication timing during development anticipates transcriptional programs and parallels enhancer activation

inferredcites →https://doi.org/10.1101/gr.239913.118openalex-snapshot

Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila

inferredcites →https://doi.org/10.1101/sqb.2015.80.027284openalex-snapshot

Large-Scale Chromatin Structure–Function Relationships during the Cell Cycle and Development: Insights from Replication Timing

inferredcites →https://doi.org/10.1146/annurev-pathol-012414-040424openalex-snapshot

DNA Replication Stress as a Hallmark of Cancer

inferredcites →https://doi.org/10.1371/journal.pbio.0060245openalex-snapshot

Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation

inferredcites →https://doi.org/10.15252/embj.201796541openalex-snapshot

Histone H4K20 tri‐methylation at late‐firing origins ensures timely heterochromatin replication

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3390/genes10040269openalex-snapshot

Next-Generation Sequencing Enables Spatiotemporal Resolution of Human Centromere Replication Timing

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