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Constitutively enhanced genome integrity maintenance and direct stress mitigation characterize transcriptome of extreme stress-adapted Arabidopsis halleri
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1 of the 66 references listed on this page is in the Retraction Watch database as retracted (export 2026-11-04): 10.1371/journal.pgen.1007797 (notice 2026-01-20).
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.bbagrm.2014.07.017openalex-snapshot
LTR retrotransposons, handy hitchhikers of plant regulation and stress response
inferredcites →https://doi.org/10.1016/j.cub.2008.08.050openalex-snapshot
Aluminum-Dependent Root-Growth Inhibition in Arabidopsis Results from AtATR-Regulated Cell-Cycle Arrest
inferredcites →https://doi.org/10.1016/j.cub.2013.08.059openalex-snapshot
Meiotic Adaptation to Genome Duplication in Arabidopsis arenosa
inferredcites →https://doi.org/10.1016/j.jacc.2016.02.066openalex-snapshot
Heavy Metals, Cardiovascular Disease, and the Unexpected Benefits of Chelation Therapy
inferredcites →https://doi.org/10.1016/j.pbi.2018.02.008openalex-snapshot
Conceptualizing plant systems evolution
inferredcites →https://doi.org/10.1016/j.tig.2005.01.002openalex-snapshot
The dual nature of homologous recombination in plants
inferredcites →https://doi.org/10.1016/j.tig.2017.08.007openalex-snapshot
Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response
inferredcites →https://doi.org/10.1038/227680a0openalex-snapshot
Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4
inferredcites →https://doi.org/10.1038/333134a0openalex-snapshot
Quantitative assessment of worldwide contamination of air, water and soils by trace metals
inferredcites →https://doi.org/10.1038/89327openalex-snapshot
A sensitive transgenic plant system to detect toxic inorganic compounds in the environment
inferredcites →https://doi.org/10.1038/hdy.1992.35openalex-snapshot
Genetic control of copper tolerance in Silene vulgaris
inferredcites →https://doi.org/10.1038/nature06877openalex-snapshot
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4
inferredcites →https://doi.org/10.1038/nature08828openalex-snapshot
Control of female gamete formation by a small RNA pathway in Arabidopsis
inferredcites →https://doi.org/10.1038/nmeth.1226openalex-snapshot
Mapping and quantifying mammalian transcriptomes by RNA-Seq
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/s41477-018-0338-zopenalex-snapshot
Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation
inferredcites →https://doi.org/10.1046/j.1365-313x.2003.01959.xopenalex-snapshot
Cross‐species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri
inferredcites →https://doi.org/10.1046/j.1365-313x.2003.01960.xopenalex-snapshot
Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors
inferredcites →https://doi.org/10.1046/j.1469-8137.2000.00634.xopenalex-snapshot
Zinc tolerance and accumulation in metallicolous and nonmetallicolous populations of Arabidopsis halleri (Brassicaceae)
inferredcites →https://doi.org/10.1073/pnas.1100659108openalex-snapshot
Monoubiquitin-dependent endocytosis of the IRON-REGULATED TRANSPORTER 1 (IRT1) transporter controls iron uptake in plants
inferredcites →https://doi.org/10.1093/aobpla/plz076openalex-snapshot
Arabidopsis halleri: a perennial model system for studying population differentiation and local adaptation
inferredcites →https://doi.org/10.1093/bioinformatics/btv566openalex-snapshot
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
inferredcites →https://doi.org/10.1093/jxb/erg069openalex-snapshot
Arabidopsis mutants sensitive to gamma radiation include the homologue of the human repair gene ERCC1
inferredcites →https://doi.org/10.1093/jxb/ers315openalex-snapshot
Transport properties of members of the ZIP family in plants and their role in Zn and Mn homeostasis
inferredcites →https://doi.org/10.1093/jxb/erv144openalex-snapshot
Intraspecific variability of cadmium tolerance and accumulation, and cadmium-induced cell wall modifications in the metal hyperaccumulator Arabidopsis halleri
inferredcites →https://doi.org/10.1093/nar/gkw199openalex-snapshot
g:Profiler—a web server for functional interpretation of gene lists (2016 update)
inferredcites →https://doi.org/10.1104/pp.105.076232openalex-snapshot
Zinc-Dependent Global Transcriptional Control, Transcriptional Deregulation, and Higher Gene Copy Number for Genes in Metal Homeostasis of the Hyperaccumulator Arabidopsis halleri
inferredcites →https://doi.org/10.1104/pp.107.113282openalex-snapshot
Iron-Induced Turnover of the Arabidopsis IRON-REGULATED TRANSPORTER1 Metal Transporter Requires Lysine Residues
inferredcites →https://doi.org/10.1104/pp.109.136846openalex-snapshot
Two Distinct MUS81-EME1 Complexes from Arabidopsis Process Holliday Junctions
inferredcites →https://doi.org/10.1104/pp.15.01037openalex-snapshot
CATION EXCHANGER1 Cosegregates with Cadmium Tolerance in the Metal Hyperaccumulator Arabidopsis halleri and Plays a Role in Limiting Oxidative Stress in Arabidopsis Spp.
inferredcites →https://doi.org/10.1104/pp.16.01916openalex-snapshot
Heavy Metals Induce Iron Deficiency Responses at Different Hierarchic and Regulatory Levels
inferredcites →https://doi.org/10.1105/tpc.001388openalex-snapshot
IRT1, an Arabidopsis Transporter Essential for Iron Uptake from the Soil and for Plant Growth
inferredcites →https://doi.org/10.1105/tpc.020487openalex-snapshot
P-Type ATPase Heavy Metal Transporters with Roles in Essential Zinc Homeostasis in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.109.073023openalex-snapshot
High-Affinity Manganese Uptake by the Metal Transporter NRAMP1 Is Essential for Arabidopsis Growth in Low Manganese Conditions
inferredcites →https://doi.org/10.1105/tpc.111.086314openalex-snapshot
Condensin II Alleviates DNA Damage and Is Essential for Tolerance of Boron Overload Stress in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.111.095000openalex-snapshot
Elevated Nicotianamine Levels in Arabidopsis halleri Roots Play a Key Role in Zinc Hyperaccumulation
inferredcites →https://doi.org/10.1105/tpc.16.00769openalex-snapshot
IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.18.00207openalex-snapshot
Systemic Upregulation of MTP2- and HMA2-Mediated Zn Partitioning to the Shoot Supplements Local Zn Deficiency Responses
inferredcites →https://doi.org/10.1111/1755-0998.12604openalex-snapshot
Genome assembly and annotation of Arabidopsis halleri , a model for heavy metal hyperaccumulation and evolutionary ecology
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02739.xopenalex-snapshot
Multiple origin of metallicolous populations of the pseudometallophyte Arabidopsis halleri (Brassicaceae) in central Europe: the cpDNA testimony
inferredcites →https://doi.org/10.1111/j.1365-3040.2005.01479.xopenalex-snapshot
Comparative transcriptome analysis of toxic metal responses inArabidopsis thalianaand the Cd2+‐hypertolerant facultative metallophyteArabidopsis halleri
inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02136.xopenalex-snapshot
Roles of the AtErcc1 protein in recombination
inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02143.xopenalex-snapshot
Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co‐segregate with zinc tolerance and account for high MTP1 transcript levels
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03062.xopenalex-snapshot
Variability of zinc tolerance among and within populations of the pseudometallophyte species Arabidopsis halleri and possible role of directional selection
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03947.xopenalex-snapshot
BRCA2 is a mediator of RAD51‐ and DMC1‐facilitated homologous recombination in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/nph.12663openalex-snapshot
Zinc and cadmium hyperaccumulation act as deterrents towards specialist herbivores and impede the performance of a generalist herbivore
inferredcites →https://doi.org/10.1111/nph.13499openalex-snapshot
Meiosis evolves: adaptation to external and internal environments
inferredcites →https://doi.org/10.1111/nph.14219openalex-snapshot
Relationships between soil and leaf mineral composition are element‐specific, environment‐dependent and geographically structured in the emerging model Arabidopsis halleri
inferredcites →https://doi.org/10.1111/nph.14907openalex-snapshot
A global database for plants that hyperaccumulate metal and metalloid trace elements
inferredcites →https://doi.org/10.1111/nph.14948openalex-snapshot
Contrasting cadmium resistance strategies in two metallicolous populations of Arabidopsis halleri
inferredcites →https://doi.org/10.1111/nph.14949openalex-snapshot
Adaptation to high zinc depends on distinct mechanisms in metallicolous populations of Arabidopsis halleri
inferredcites →https://doi.org/10.1111/nph.17173openalex-snapshot
Adaptation of Arabidopsis halleri to extreme metal pollution through limited metal accumulation involves changes in cell wall composition and metal homeostasis
inferredcites →https://doi.org/10.1111/tpj.14121openalex-snapshot
Transcriptional effects of cadmium on iron homeostasis differ in calamine accessions of Noccaea caerulescens
inferredcites →https://doi.org/10.1146/annurev-arplant-050213-035923openalex-snapshot
The Molecular Biology of Meiosis in Plants
inferredcites →https://doi.org/10.1158/0008-5472.can-17-0337openalex-snapshot
Variant Review with the Integrative Genomics Viewer
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13059-016-1072-3openalex-snapshot
Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements
inferredcites →https://doi.org/10.1199/tab.0174openalex-snapshot
The Ubiquitination Machinery of the Ubiquitin System
inferredcites →https://doi.org/10.1371/journal.pgen.1007317openalex-snapshot
FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination
inferredcites →https://doi.org/10.1371/journal.pgen.1007797openalex-snapshot
RETRACTED: Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators
inferredcites →https://doi.org/10.1371/journal.pone.0151367openalex-snapshot
Heavy Metal Exposure Influences Double Strand Break DNA Repair Outcomes
inferredcites →https://doi.org/10.3389/fpls.2013.00281openalex-snapshot
Control of Zn uptake in Arabidopsis halleri: a balance between Zn and Fe
inferredcites →https://doi.org/10.3389/fpls.2014.00177openalex-snapshot
On the role of some ARGONAUTE proteins in meiosis and DNA repair in Arabidopsis thaliana
inferredcites →https://doi.org/10.4161/psb.5.11.13548openalex-snapshot
ARGONAUTE9-dependent silencing of transposable elements in pericentromeric regions of Arabidopsis
inferredcites →https://doi.org/10.7554/elife.06100openalex-snapshot
Planting molecular functions in an ecological context with Arabidopsis thaliana
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1111/nph.17173openalex-snapshot
Adaptation of Arabidopsis halleri to extreme metal pollution through limited metal accumulation involves changes in cell wall composition and metal homeostasis
inferred← citeshttps://doi.org/10.31390/gradschool_dissertations.5613openalex-snapshot
Understanding Potassium Toxicity Stress Responses of the Extremophyte Schrenkiella Parvula Using Systems Biology Approaches
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