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Genomic characterisation and context of the bla NDM-1 carbapenemase in Escherichia coli ST101

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Emergence of clonal groups O1:HNM-D-ST59, O15:H1-D-ST393, O20:H34/HNM-D-ST354, O25b:H4-B2-ST131 and ONT:H21,42-B1-ST101 among CTX-M-14-producing Escherichia coli clinical isolates in Galicia, northwest Spain

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Complete Genome Sequence and Comparative Analysis of the Wild-type Commensal Escherichia coli Strain SE11 Isolated from a Healthy Adult

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Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance

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Extraintestinal Pathogenic Escherichia coli , a Common Human Pathogen: Challenges for Vaccine Development and Progress in the Field

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Phylogenetic diversity of Escherichia coli strains producing NDM-type carbapenemases

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Identification of acquired antimicrobial resistance genes

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Nosocomial transmission of NDM-1-producing Escherichia coli ST101 in a Korean hospital

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Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

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Virulence potential and adherence properties of Escherichia coli that produce CTX-M and NDM β-lactamases

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In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages

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Carbapenemase genes and genetic platforms in Gram-negative bacilli: Enterobacteriaceae, Pseudomonas and Acinetobacter species

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Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance

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Combinatorial events of insertion sequences and ICE in Gram-negative bacteria

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The Complete Genome Sequence of Escherichia coli K-12

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Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

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Isolation and Characterization of NDM-Positive Escherichia coli from Municipal Wastewater in Jeddah, Saudi Arabia

inferredcites →https://doi.org/10.1128/aac.00774-09openalex-snapshot

Characterization of a New Metallo-β-Lactamase Gene, bla NDM-1 , and a Novel Erythromycin Esterase Gene Carried on a Unique Genetic Structure in Klebsiella pneumoniae Sequence Type 14 from India

inferredcites →https://doi.org/10.1128/aac.01197-13openalex-snapshot

The First NDM Metallo-β-Lactamase-Producing Enterobacteriaceae Isolate in Poland: Evolution of IncFII-Type Plasmids Carrying the bla NDM-1 Gene

inferredcites →https://doi.org/10.1128/aac.01243-15openalex-snapshot

Genomic Characteristics of NDM-Producing Enterobacteriaceae Isolates in Australia and Their bla NDM Genetic Contexts

inferredcites →https://doi.org/10.1128/aac.01325-16openalex-snapshot

First Report of the Globally Disseminated IncX4 Plasmid Carrying the mcr-1 Gene in a Colistin-Resistant Escherichia coli Sequence Type 101 Isolate from a Human Infection in Brazil

inferredcites →https://doi.org/10.1128/aac.01345-16openalex-snapshot

Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia coli Strains from India

inferredcites →https://doi.org/10.1128/aac.01458-15openalex-snapshot

Characterization of Tn 3000 , a Transposon Responsible for bla NDM-1 Dissemination among Enterobacteriaceae in Brazil, Nepal, Morocco, and India

inferredcites →https://doi.org/10.1128/aac.01740-16openalex-snapshot

Identification of IncA/C Plasmid Replication and Maintenance Genes and Development of a Plasmid Multilocus Sequence Typing Scheme

inferredcites →https://doi.org/10.1128/aac.01913-18openalex-snapshot

Phylogenomic Analysis of Extraintestinal Pathogenic Escherichia coli Sequence Type 1193, an Emerging Multidrug-Resistant Clonal Group

inferredcites →https://doi.org/10.1128/aac.01962-16openalex-snapshot

Coproduction of MCR-1 and NDM-1 by Colistin-Resistant Escherichia coli Isolated from a Healthy Individual

inferredcites →https://doi.org/10.1128/aac.02280-17openalex-snapshot

Copper Ions and Coordination Complexes as Novel Carbapenem Adjuvants

inferredcites →https://doi.org/10.1128/aac.02412-14openalex-snapshot

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

inferredcites →https://doi.org/10.1128/aac.02571-13openalex-snapshot

Outbreak Caused by NDM-1- and RmtB-Producing Escherichia coli in Bulgaria

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Association of the Emerging Carbapenemase NDM-1 with a Bleomycin Resistance Protein in Enterobacteriaceae and Acinetobacter baumannii

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The Flag-2 Locus, an Ancestral Gene Cluster, Is Potentially Associated with a Novel Flagellar System from Escherichia coli

inferredcites →https://doi.org/10.1128/jcm.00008-15openalex-snapshot

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

inferredcites →https://doi.org/10.1128/jcm.01405-18openalex-snapshot

Genome-Based Prediction of Bacterial Antibiotic Resistance

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Sequential Acquisition of Virulence and Fluoroquinolone Resistance Has Shaped the Evolution of Escherichia coli ST131

inferredcites →https://doi.org/10.1128/mbio.00377-13openalex-snapshot

The Epidemic of Extended-Spectrum-β-Lactamase-Producing Escherichia coli ST131 Is Driven by a Single Highly Pathogenic Subclone, H 30-Rx

inferredcites →https://doi.org/10.1128/mbio.00742-16openalex-snapshot

Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization

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Mechanisms of Evolution in High-Consequence Drug Resistance Plasmids

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Type VII Secretion: A Highly Versatile Secretion System

inferredcites →https://doi.org/10.1128/microbiolspec.vmbf-0026-2015openalex-snapshot

The Versatile Type VI Secretion System

inferredcites →https://doi.org/10.1186/1297-9716-45-32openalex-snapshot

Escherichia coli type III secretion system 2: a new kind of T3SS?

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Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

inferredcites →https://doi.org/10.1186/1471-2164-12-402openalex-snapshot

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

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Treatment for infections with carbapenem-resistant Enterobacteriaceae: what options do we still have?

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ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

inferredcites →https://doi.org/10.1186/s13059-014-0524-xopenalex-snapshot

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

inferredcites →https://doi.org/10.1186/s13073-014-0090-6openalex-snapshot

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

inferredcites →https://doi.org/10.1371/journal.pgen.1007261openalex-snapshot

A genomic overview of the population structure of Salmonella

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progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

inferredcites →https://doi.org/10.1371/journal.pone.0026578openalex-snapshot

Insights into a Multidrug Resistant Escherichia coli Pathogen of the Globally Disseminated ST131 Lineage: Genome Analysis and Virulence Mechanisms

inferredcites →https://doi.org/10.1371/journal.pone.0034752openalex-snapshot

Characterization of an IncFII Plasmid Encoding NDM-1 from Escherichia coli ST131

inferredcites →https://doi.org/10.1371/journal.pone.0099209openalex-snapshot

Resistance Determinants and Mobile Genetic Elements of an NDM-1-Encoding Klebsiella pneumoniae Strain

inferredcites →https://doi.org/10.1371/journal.pone.0104400openalex-snapshot

The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4-ST131 Clone

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Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

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Genetic characterization of blaNDM-harboring plasmids in carbapenem-resistant Escherichia coli from Myanmar

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Dissemination of Clonally Related Escherichia coli Strains Expressing Extended-Spectrum β-Lactamase CTX-M-15

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Extensively Drug-Resistant New Delhi Metallo-β-Lactamase–Encoding Bacteria in the Environment, Dhaka, Bangladesh, 2012

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Contiguity: Contig adjacency graph construction and visualisation

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Differences in chlorine and peracetic acid disinfection kinetics of Enterococcus faecalis and Escherichia fergusonii and their susceptible strains based on gene expressions and genomics

inferred← citeshttps://doi.org/10.1101/2020.06.07.138552openalex-snapshot

Strain and lineage-level methylome heterogeneity in the multi-drug resistant pathogenic Escherichia coli ST101 clone

inferred← citeshttps://doi.org/10.4315/jfp-21-033openalex-snapshot

Antimicrobial Resistance Phenotypes and Genotypes of Escherichia coli Isolates from Broiler Chickens Fed Encapsulated Cinnamaldehyde and Citral

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