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Shallow Genome Sequencing for Phylogenomics of Mycorrhizal Fungi from Endangered Orchids

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4939-7771-0_2openalex-snapshot

Orchid Mycorrhizal Fungi: Isolation and Identification Techniques

inferredcites →https://doi.org/10.1007/978-3-319-67979-2_4openalex-snapshot

ASTRAL-III: Increased Scalability and Impacts of Contracting Low Support Branches

inferredcites →https://doi.org/10.1007/978-3-642-37195-0_13openalex-snapshot

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads

inferredcites →https://doi.org/10.1007/978-3-642-55318-9_14openalex-snapshot

14 Agaricomycetes

inferredcites →https://doi.org/10.1007/978-3-662-07334-6_8openalex-snapshot

Piriformospora indica: An Axenically Culturable Mycorrhiza-Like Endosymbiotic Fungus

inferredcites →https://doi.org/10.1007/978-94-017-2498-2_4openalex-snapshot

Fungi from orchid mycorrhizas

inferredcites →https://doi.org/10.1007/s10886-012-0134-6openalex-snapshot

Mycorrhiza-Induced Resistance and Priming of Plant Defenses

inferredcites →https://doi.org/10.1007/s11258-010-9765-2openalex-snapshot

Comparative water balance profiles of Orchidaceae seeds for epiphytic and terrestrial taxa endemic to North America

inferredcites →https://doi.org/10.1007/s11557-012-0880-4openalex-snapshot

Enigmatic Sebacinales

inferredcites →https://doi.org/10.1007/s11557-013-0936-0openalex-snapshot

Taxonomic re-evaluation of the Ceratobasidium-Rhizoctonia complex and Rhizoctonia butinii, a new species attacking spruce

inferredcites →https://doi.org/10.1007/s12155-015-9636-8openalex-snapshot

A Novel Delivery System for the Root Symbiotic Fungus, Sebacina vermifera, and Consequent Biomass Enhancement of Low Lignin COMT Switchgrass Lines

inferredcites →https://doi.org/10.1007/s13225-014-0291-8openalex-snapshot

Improving ITS sequence data for identification of plant pathogenic fungi

inferredcites →https://doi.org/10.1016/b978-0-12-372180-8.50042-1openalex-snapshot

AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

inferredcites →https://doi.org/10.1016/j.funbio.2016.01.012openalex-snapshot

Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales

inferredcites →https://doi.org/10.1016/j.funeco.2013.03.004openalex-snapshot

Evolution of nutritional modes of Ceratobasidiaceae (Cantharellales, Basidiomycota) as revealed from publicly available ITS sequences

inferredcites →https://doi.org/10.1016/j.funeco.2016.11.009openalex-snapshot

Evaluating multilocus Bayesian species delimitation for discovery of cryptic mycorrhizal diversity

inferredcites →https://doi.org/10.1016/j.molp.2017.07.012openalex-snapshot

Nutrient Exchange and Regulation in Arbuscular Mycorrhizal Symbiosis

inferredcites →https://doi.org/10.1016/j.plantsci.2017.06.015openalex-snapshot

Cell-specific expression of plant nutrient transporter genes in orchid mycorrhizae

inferredcites →https://doi.org/10.1016/j.tplants.2012.06.007openalex-snapshot

Fungal superhighways: do common mycorrhizal networks enhance below ground communication?

inferredcites →https://doi.org/10.1038/ng.3223openalex-snapshot

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot

Fast and sensitive protein alignment using DIAMOND

inferredcites →https://doi.org/10.1038/nrmicro2963openalex-snapshot

Fungal systematics: is a new age of enlightenment at hand?

inferredcites →https://doi.org/10.1038/s41467-018-07849-9openalex-snapshot

Contemporaneous radiations of fungi and plants linked to symbiosis

inferredcites →https://doi.org/10.1038/s41598-017-05855-3openalex-snapshot

Population structure of an orchid mycorrhizal fungus with genus-wide specificity

inferredcites →https://doi.org/10.1079/9780851998268.0000openalex-snapshot

Ainsworth and Bisbys Dictionary of the Fungi

inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot

A Rapid Bootstrap Algorithm for the RAxML Web Servers

inferredcites →https://doi.org/10.1086/693564openalex-snapshot

Inordinate Fondness Multiplied and Redistributed: the Number of Species on Earth and the New Pie of Life

inferredcites →https://doi.org/10.1093/aob/mcv087openalex-snapshot

Germination and seedling establishment in orchids: a complex of requirements

inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot

Gene prediction with a hidden Markov model and a new intron submodel

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btr010openalex-snapshot

A novel hybrid gene prediction method employing protein multiple sequence alignments

inferredcites →https://doi.org/10.1093/bioinformatics/btu462openalex-snapshot

ASTRAL: genome-scale coalescent-based species tree estimation

inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

inferredcites →https://doi.org/10.1093/molbev/msv337openalex-snapshot

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities

inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/gkt1183openalex-snapshot

MycoCosm portal: gearing up for 1000 fungal genomes

inferredcites →https://doi.org/10.1093/nar/gku557openalex-snapshot

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

inferredcites →https://doi.org/10.1093/nar/gky1022openalex-snapshot

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

inferredcites →https://doi.org/10.1094/pbiomes-12-18-0058-popenalex-snapshot

More than Serendipity: The Potential to Manage Soil Carbon and Emissions While Promoting Low-Input Agriculture with Serendipitoid Mycorrhizae

inferredcites →https://doi.org/10.1111/1365-2745.12556openalex-snapshot

Germination patterns in three terrestrial orchids relate to abundance of mycorrhizal fungi

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05692.xopenalex-snapshot

The role of epiphytism in architecture and evolutionary constraint within mycorrhizal networks of tropical orchids

inferredcites →https://doi.org/10.1111/j.1469-8137.2007.02320.xopenalex-snapshot

Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas

inferredcites →https://doi.org/10.1111/nph.12700openalex-snapshot

Stable isotope cellular imaging reveals that both live and degenerating fungal pelotons transfer carbon and nitrogen to orchid protocorms

inferredcites →https://doi.org/10.1111/nph.13977openalex-snapshot

Sebacinales – one thousand and one interactions with land plants

inferredcites →https://doi.org/10.1111/nph.14279openalex-snapshot

Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas

inferredcites →https://doi.org/10.1128/9781555819583.ch4openalex-snapshot

Fungal Diversity Revisited: 2.2 to 3.8 Million Species

inferredcites →https://doi.org/10.1128/microbiolspec.funk-0052-2016openalex-snapshot

Fungal Diversity Revisited: 2.2 to 3.8 Million Species

inferredcites →https://doi.org/10.1139/b04-071openalex-snapshot

Exploring structural definitions of mycorrhizas, with emphasis on nutrient-exchange interfaces

inferredcites →https://doi.org/10.1186/1471-2105-5-59openalex-snapshot

Gene finding in novel genomes

inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot

Automated generation of heuristics for biological sequence comparison

inferredcites →https://doi.org/10.1186/1471-2180-10-189openalex-snapshot

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

inferredcites →https://doi.org/10.1186/s12864-015-1344-4openalex-snapshot

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts

inferredcites →https://doi.org/10.2307/4102957openalex-snapshot

A Preliminary Report on the Symbiotic Germination of European Terrestrial Orchids

inferredcites →https://doi.org/10.3732/ajb.1000298openalex-snapshot

The Fungi: 1, 2, 3 … 5.1 million species?

inferredcites →https://doi.org/10.3732/apps.1200394openalex-snapshot

Phylogenetic and microsatellite markers for Tulasnella (Tulasnellaceae) mycorrhizal fungi associated with Australian orchids

inferredcites →https://doi.org/10.3732/apps.1400015openalex-snapshot

Development of phylogenetic markers for Sebacina (Sebacinaceae) mycorrhizal fungi associated with Australian orchids

inferredcites →https://doi.org/10.3852/16-042openalex-snapshot

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

inferredcites →https://doi.org/10.3852/mycologia.98.6.917openalex-snapshot

A phylogenetic overview of the Agaricomycotina

inferredcites →https://doi.org/10.5598/imafungus.2017.08.01.03openalex-snapshot

New species of Tulasnella associated with terrestrial orchids in Australia

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10265-026-01699-zopenalex-snapshot

Mycorrhizal specialization for Tulasnellaceae fungi in Taeniophyllum marianense, a leafless epiphytic orchid native to Guam

inferred← citeshttps://doi.org/10.1146/annurev-micro-022020-051835openalex-snapshot

Toward a Fully Resolved Fungal Tree of Life

inferred← citeshttps://doi.org/10.1186/s40529-021-00321-wopenalex-snapshot

Tulasnella calospora (UAMH 9824) retains its effectiveness at facilitating orchid symbiotic germination in vitro after two decades of subculturing

inferred← citeshttps://doi.org/10.3389/fpls.2021.646325openalex-snapshot

Progress and Prospects of Mycorrhizal Fungal Diversity in Orchids

inferred← citeshttps://doi.org/10.3390/d15040576openalex-snapshot

Initial Population Analysis and Mycorrhizal Fungi of the Leafless Epiphytic Orchid, Campylocentrum pachyrrhizum, in Florida

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