On the public citation graph

Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities and denoising algorithms

https://doi.org/10.1101/866731
0 signed · 34 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/ismej.2014.195openalex-snapshot
Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot
DADA2: High-resolution sample inference from Illumina amplicon data
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.5openalex-snapshot
Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom
inferredcites →https://doi.org/10.1038/nrmicro3417openalex-snapshot
Marine microbial community dynamics and their ecological interpretation
inferredcites →https://doi.org/10.1038/s41396-018-0097-xopenalex-snapshot
Short-term dynamics and interactions of marine protist communities during the spring–summer transition
inferredcites →https://doi.org/10.1038/s41396-018-0169-yopenalex-snapshot
Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling
inferredcites →https://doi.org/10.1038/s41598-019-49660-6openalex-snapshot
Transgenic Aedes aegypti Mosquitoes Transfer Genes into a Natural Population
inferredcites →https://doi.org/10.1038/s41598-019-52648-xopenalex-snapshot
Temporal and spatial dynamics of Bacteria, Archaea and protists in equatorial coastal waters
inferredcites →https://doi.org/10.1073/pnas.0605127103openalex-snapshot
Microbial diversity in the deep sea and the underexplored “rare biosphere”
inferredcites →https://doi.org/10.1111/1462-2920.13023openalex-snapshot
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
inferredcites →https://doi.org/10.1111/1462-2920.13185openalex-snapshot
Microbial eukaryotic distributions and diversity patterns in a deep‐sea methane seep ecosystem
inferredcites →https://doi.org/10.1111/1462-2920.14733openalex-snapshot
Validation of a universal set of primers to study animal‐associated microeukaryotic communities
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04480.xopenalex-snapshot
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
inferredcites →https://doi.org/10.1111/jeu.12187openalex-snapshot
Comparing High‐throughput Platforms for Sequencing the V4 Region of SSU‐r DNA in Environmental Microbial Eukaryotic Diversity Surveys
inferredcites →https://doi.org/10.1126/science.1261605openalex-snapshot
Eukaryotic plankton diversity in the sunlit ocean
inferredcites →https://doi.org/10.1128/aem.01630-16openalex-snapshot
Design and Evaluation of Illumina MiSeq-Compatible, 18S rRNA Gene-Specific Primers for Improved Characterization of Mixed Phototrophic Communities
inferredcites →https://doi.org/10.1128/aem.02403-07openalex-snapshot
Quantification of the Detrimental Effect of a Single Primer-Template Mismatch by Real-Time PCR Using the 16S rRNA Gene as an Example
inferredcites →https://doi.org/10.1128/aem.02634-18openalex-snapshot
Towards Quantitative Microbiome Community Profiling Using Internal Standards
inferredcites →https://doi.org/10.1128/msystems.00023-18openalex-snapshot
Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run
inferredcites →https://doi.org/10.1128/msystems.00191-16openalex-snapshot
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
inferredcites →https://doi.org/10.1371/journal.pone.0006372openalex-snapshot
A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.3354/ame01740openalex-snapshot
Protist diversity along a salinity gradient in a coastal lagoon
inferredcites →https://doi.org/10.3354/ame01753openalex-snapshot
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
inferredcites →https://doi.org/10.7287/peerj.preprints.27295v1openalex-snapshot
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/2020.10.30.332502openalex-snapshot
Ribosome-linked mRNA-rRNA chimeras reveal active novel virus host associations
inferred← citeshttps://doi.org/10.1111/1462-2920.15221openalex-snapshot
Phytoplankton composition in a eutrophic estuary: Comparison of multiple taxonomic approaches and influence of environmental factors
inferred← citeshttps://doi.org/10.3389/978-2-8325-4131-9openalex-snapshot
Marine Microbiomes: Towards Standard Methods and Best Practices
inferred← citeshttps://doi.org/10.3389/fenvs.2021.642098openalex-snapshot
The Three Domains of Life Within the Discharge Area of a Shallow Subterranean Estuary at a High Energy Beach
inferred← citeshttps://doi.org/10.3389/fmars.2025.1681652openalex-snapshot
Identifying and addressing the components of extreme physical-oceanographical events for improved risk management in coastal systems
inferred← citeshttps://doi.org/10.3389/fmicb.2020.610231openalex-snapshot
Relative Influence of Plastic Debris Size and Shape, Chemical Composition and Phytoplankton-Bacteria Interactions in Driving Seawater Plastisphere Abundance, Diversity and Activity
inferred← citeshttps://doi.org/10.3389/fmicb.2021.637526openalex-snapshot
Comparison of Two 16S rRNA Primers (V3–V4 and V4–V5) for Studies of Arctic Microbial Communities
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1526969openalex-snapshot
Unique microbial communities in ancient volcanic ash layers within deep marine sediments are structured by the composition of iron phases
inferred← citeshttps://doi.org/10.3390/microorganisms10050859openalex-snapshot
Seasonal and Zonal Succession of Bacterial Communities in North Sea Salt Marsh Sediments
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.