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Comparative genomic analysis of Cristatella mucedo provides insights into Bryozoan evolution and nervous system function

https://doi.org/10.1101/869792
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/3-540-28516-4_12openalex-snapshot
GABA and GHB Neurotransmitters in Plants and Animals
inferredcites →https://doi.org/10.1007/5584_2017_56openalex-snapshot
ATP-Gated P2X3 Receptors Are Specialised Sensors of the Extracellular Environment
inferredcites →https://doi.org/10.1007/978-1-4939-9173-0_5openalex-snapshot
Whole-Genome Annotation with BRAKER
inferredcites →https://doi.org/10.1007/s00427-006-0119-yopenalex-snapshot
Hox gene expression in larval development of the polychaetes Nereis virens and Platynereis dumerilii (Annelida, Lophotrochozoa)
inferredcites →https://doi.org/10.1016/j.cbd.2012.03.003openalex-snapshot
Complete mitochondrial genome of Membranipora grandicella (Bryozoa: Cheilostomatida) determined with next-generation sequencing: The first representative of the suborder Malacostegina
inferredcites →https://doi.org/10.1016/j.gene.2009.03.003openalex-snapshot
The complete mitochondrial genome of Watersipora subtorquata (Bryozoa, Gymnolaemata, Ctenostomata) with phylogenetic consideration of Bryozoa
inferredcites →https://doi.org/10.1016/j.margen.2011.03.006openalex-snapshot
Complete mitochondrial genome of Tubulipora flabellaris (Bryozoa: Stenolaemata): The first representative from the class Stenolaemata with unique gene order
inferredcites →https://doi.org/10.1016/j.ympev.2006.03.007openalex-snapshot
The complete mitochondrial genome of Flustrellidra hispida and the phylogenetic position of Bryozoa among the Metazoa
inferredcites →https://doi.org/10.1016/j.ympev.2009.01.021openalex-snapshot
The first comprehensive molecular phylogeny of Bryozoa (Ectoprocta) based on combined analyses of nuclear and mitochondrial genes
inferredcites →https://doi.org/10.1016/j.ympev.2009.05.010openalex-snapshot
Bayesian phylogenetics of Bryozoa
inferredcites →https://doi.org/10.1016/j.ympev.2009.12.022openalex-snapshot
Phylogenetic relationships within the lophophorate lineages (Ectoprocta, Brachiopoda and Phoronida)
inferredcites →https://doi.org/10.1016/j.ympev.2011.11.011openalex-snapshot
A molecular phylogeny of bryozoans
inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot
MITOS: Improved de novo metazoan mitochondrial genome annotation
inferredcites →https://doi.org/10.1016/s0005-2736(03)00210-4openalex-snapshot
Extracellular ATP as a signaling molecule for epithelial cells
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/ncomms9301openalex-snapshot
The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/s41559-017-0389-yopenalex-snapshot
Nemertean and phoronid genomes reveal lophotrochozoan evolution and the origin of bilaterian heads
inferredcites →https://doi.org/10.1038/s41587-019-0072-8openalex-snapshot
Assembly of long, error-prone reads using repeat graphs
inferredcites →https://doi.org/10.1038/s41587-019-0201-4openalex-snapshot
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot
Minimap2: pairwise alignment for nucleotide sequences
inferredcites →https://doi.org/10.1093/molbev/msx319openalex-snapshot
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
inferredcites →https://doi.org/10.1093/nar/gkw1119openalex-snapshot
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
inferredcites →https://doi.org/10.1101/gr.214270.116openalex-snapshot
Fast and accurate de novo genome assembly from long uncorrected reads
inferredcites →https://doi.org/10.1111/j.1525-142x.2004.04032.xopenalex-snapshot
Evidence from Hox genes that bryozoans are lophotrochozoans
inferredcites →https://doi.org/10.11646/zootaxa.3703.1.1openalex-snapshot
Title and imprint page
inferredcites →https://doi.org/10.1186/1471-2164-10-167openalex-snapshot
Complete mitochondrial genome of Bugula neritina (Bryozoa, Gymnolaemata, Cheilostomata): phylogenetic position of Bryozoa and phylogeny of lophophorates within the Lophotrochozoa
inferredcites →https://doi.org/10.1186/2041-9139-4-13openalex-snapshot
Hox gene expression during postlarval development of the polychaete Alitta virens
inferredcites →https://doi.org/10.1186/2041-9139-4-14openalex-snapshot
Expression of Hox genes during regeneration of nereid polychaete Alitta (Nereis) virens (Annelida, Lophotrochozoa)
inferredcites →https://doi.org/10.1186/s12983-015-0112-2openalex-snapshot
Comparative morphology of the nervous system in three phylactolaemate bryozoans
inferredcites →https://doi.org/10.1186/s13059-016-0924-1openalex-snapshot
JBrowse: a dynamic web platform for genome visualization and analysis
inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot
OrthoFinder: phylogenetic orthology inference for comparative genomics
inferredcites →https://doi.org/10.1371/journal.pcbi.1005595openalex-snapshot
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
inferredcites →https://doi.org/10.1371/journal.pone.0004004openalex-snapshot
Genomic Organization and Expression Demonstrate Spatial and Temporal Hox Gene Colinearity in the Lophotrochozoan Capitella sp. I
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.1387/ijdb.9654030openalex-snapshot
Hox genes, homeosis and the evolution of segment identity: no need for hopeless monsters

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-0716-2172-1_8openalex-snapshot
Collecting and Culturing Bryozoans for Regenerative Studies
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