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Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/meth.2001.1262openalex-snapshot
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
inferredcites →https://doi.org/10.1007/s00018-006-6278-1openalex-snapshot
A housekeeper with power of attorney: the rRNA genes in ribosome biogenesis
inferredcites →https://doi.org/10.1016/0003-2697(83)90418-9openalex-snapshot
A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity
inferredcites →https://doi.org/10.1016/0022-2836(91)80122-bopenalex-snapshot
rDNA intergenic region from Arabidopsis thaliana structural analysis, intraspecific variation and functional implications
inferredcites →https://doi.org/10.1016/0092-8674(86)90765-8openalex-snapshot
Spacer promoters are essential for efficient enhancement of X. laevis ribosomal transcription
inferredcites →https://doi.org/10.1016/0955-0674(89)90007-0openalex-snapshot
Regulatory elements of the generic ribosomal gene
inferredcites →https://doi.org/10.1016/j.bbaexp.2007.02.005openalex-snapshot
rRNA gene silencing and nucleolar dominance: Insights into a chromosome-scale epigenetic on/off switch
inferredcites →https://doi.org/10.1016/j.ceb.2009.01.025openalex-snapshot
RNA-mediated chromatin-based silencing in plants
inferredcites →https://doi.org/10.1016/j.cell.2005.02.007openalex-snapshot
Plant Nuclear RNA Polymerase IV Mediates siRNA and DNA Methylation-Dependent Heterochromatin Formation
inferredcites →https://doi.org/10.1016/j.cell.2006.05.031openalex-snapshot
The Arabidopsis Chromatin-Modifying Nuclear siRNA Pathway Involves a Nucleolar RNA Processing Center
inferredcites →https://doi.org/10.1016/j.cell.2008.09.035openalex-snapshot
Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes
inferredcites →https://doi.org/10.1016/j.molcel.2006.03.028openalex-snapshot
Intergenic Transcripts Regulate the Epigenetic State of rRNA Genes
inferredcites →https://doi.org/10.1016/j.molcel.2008.11.009openalex-snapshot
Multimegabase Silencing in Nucleolar Dominance Involves siRNA-Directed DNA Methylation and Specific Methylcytosine-Binding Proteins
inferredcites →https://doi.org/10.1016/j.molcel.2009.07.008openalex-snapshot
Loss of Human Ribosomal Gene CpG Methylation Enhances Cryptic RNA Polymerase II Transcription and Disrupts Ribosomal RNA Processing
inferredcites →https://doi.org/10.1016/j.tibs.2007.08.002openalex-snapshot
The ribosome in focus: new structures bring new insights
inferredcites →https://doi.org/10.1016/s0168-9525(97)01199-2openalex-snapshot
DNA methylation and plant development
inferredcites →https://doi.org/10.1016/s1097-2765(04)00064-4openalex-snapshot
A Concerted DNA Methylation/Histone Methylation Switch Regulates rRNA Gene Dosage Control and Nucleolar Dominance
inferredcites →https://doi.org/10.1038/43710openalex-snapshot
Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors
inferredcites →https://doi.org/10.1038/embor.2008.109openalex-snapshot
The structure of NoRC‐associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus
inferredcites →https://doi.org/10.1038/embor.2009.254openalex-snapshot
Intergenic transcripts originating from a subclass of ribosomal DNA repeats silence ribosomal RNA genes in trans
inferredcites →https://doi.org/10.1038/ng1010openalex-snapshot
The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription
inferredcites →https://doi.org/10.1038/nrg1500openalex-snapshot
RNAi-mediated pathways in the nucleus
inferredcites →https://doi.org/10.1038/nrm1171openalex-snapshot
Epigenetic silencing of RNA polymerase I transcription
inferredcites →https://doi.org/10.1042/bss0730203openalex-snapshot
The RNA polymerase I transcription machinery
inferredcites →https://doi.org/10.1046/j.1365-313x.1995.7020273.xopenalex-snapshot
Use of RFLPs larger than 100 kbp to map the position and internal organization of the nucleolus organizer region on chromosome 2 in Arabidopsis thaliana
inferredcites →https://doi.org/10.1046/j.1365-313x.1996.09020259.xopenalex-snapshot
RFLP and physical mapping with an rDNA‐specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4
inferredcites →https://doi.org/10.1046/j.1365-313x.1996.09020273.xopenalex-snapshot
Two‐dimensional RFLP analyses reveal megabase‐sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution
inferredcites →https://doi.org/10.1046/j.1365-313x.1997.11051007.xopenalex-snapshot
Ribosomal transcription units integrated via T‐DNA transformation associate with the nucleolus and do not require upstream repeat sequences for activity in Arabidopsis thaliana
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Floral dip: a simplified method for Agrobacterium ‐mediated transformation of Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.162371499openalex-snapshot
RNA-directed DNA methylation in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.1932522100openalex-snapshot
Natural variation in nucleolar dominance reveals the relationship between nucleolus organizer chromatin topology and rRNA gene transcription in Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.90.16.7528openalex-snapshot
Functional analysis of Arabidopsis thaliana rRNA gene and spacer promoters in vivo and by transient expression.
inferredcites →https://doi.org/10.1073/pnas.94.7.3442openalex-snapshot
Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica
inferredcites →https://doi.org/10.1073/pnas.95.7.3519openalex-snapshot
A role for histone deacetylase activity in HDAC1-mediated transcriptional repression
inferredcites →https://doi.org/10.1074/jbc.m202737200openalex-snapshot
Xenopus Ribosomal RNA Gene Intergenic Spacer Elements Conferring Transcriptional Enhancement and Nucleolar Dominance-like Competition in Oocytes
inferredcites →https://doi.org/10.1093/emboj/cdf498openalex-snapshot
RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase
inferredcites →https://doi.org/10.1093/genetics/149.2.651openalex-snapshot
Gene Silencing and Homology-Dependent Gene Silencing in Arabidopsis: Genetic Modifiers and DNA Methylation
inferredcites →https://doi.org/10.1093/nar/gkm118openalex-snapshot
Epigenetic disruption of ribosomal RNA genes and nucleolar architecture in DNA methyltransferase 1 (Dnmt1) deficient cells
inferredcites →https://doi.org/10.1093/nar/gnh172openalex-snapshot
Site-directed, Ligase-Independent Mutagenesis (SLIM): a single-tube methodology approaching 100% efficiency in 4 h
inferredcites →https://doi.org/10.1101/gad.1417706openalex-snapshot
Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance
inferredcites →https://doi.org/10.1101/gad.1436906openalex-snapshot
Nucleolar dominance: a model for rRNA gene silencing
inferredcites →https://doi.org/10.1101/gad.1765209openalex-snapshot
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation
inferredcites →https://doi.org/10.1105/tpc.017467openalex-snapshot
Changes in 5S rDNA Chromatin Organization and Transcription during Heterochromatin Establishment in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.018754openalex-snapshot
Arabidopsis Histone Deacetylase HDA6 Is Required for Maintenance of Transcriptional Gene Silencing and Determines Nuclear Organization of rDNA Repeats
inferredcites →https://doi.org/10.1105/tpc.13.5.1047openalex-snapshot
Identification of Arabidopsis Histone Deacetylase HDA6 Mutants That Affect Transgene Expression
inferredcites →https://doi.org/10.1111/j.1365-313x.2005.02617.xopenalex-snapshot
Gateway‐compatible vectors for plant functional genomics and proteomics
inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03264.xopenalex-snapshot
In vitro specificities of Arabidopsis co‐activator histone acetyltransferases: implications for histone hyperacetylation in gene activation
inferredcites →https://doi.org/10.1126/science.8316832openalex-snapshot
Arabidopsis thaliana DNA Methylation Mutants
inferredcites →https://doi.org/10.1128/mcb.10.9.4667openalex-snapshot
Spacer promoters are orientation-dependent activators of pre-rRNA transcription in Drosophila melanogaster.
inferredcites →https://doi.org/10.1128/mcb.10.9.4816openalex-snapshot
Enhancers for RNA Polymerase I in Mouse Ribosomal DNA
inferredcites →https://doi.org/10.1128/mcb.23.5.1558-1568.2003openalex-snapshot
In Exponentially Growing Saccharomyces cerevisiae Cells, rRNA Synthesis Is Determined by the Summed RNA Polymerase I Loading Rate Rather than by the Number of Active Genes
inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103835openalex-snapshot
Genetic and Epigenetic Mechanisms for Gene Expression and Phenotypic Variation in Plant Polyploids
inferredcites →https://doi.org/10.1146/annurev.cellbio.24.110707.175259openalex-snapshot
The Epigenetics of rRNA Genes: From Molecular to Chromosome Biology
inferredcites →https://doi.org/10.1371/journal.pbio.0000067openalex-snapshot
Distinct Mechanisms Determine Transposon Inheritance and Methylation via Small Interfering RNA and Histone Modification
inferredcites →https://doi.org/10.1371/journal.pgen.0010079openalex-snapshot
Differential Regulation of Strand-Specific Transcripts from Arabidopsis Centromeric Satellite Repeats
inferredcites →https://doi.org/10.1371/journal.pone.0001157openalex-snapshot
Postembryonic Establishment of Megabase-Scale Gene Silencing in Nucleolar Dominance
inferredcites →https://doi.org/10.1534/genetics.107.071092openalex-snapshot
Differential Epigenetic Regulation Within an Arabidopsis Retroposon Family
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/compcytogen.18.127373zenodo-depositor-declared
Description of the complete rDNA repeat unit structure of Coturnix japonica Temminck et Schlegel, 1849 (Aves)
inferred← citeshttps://doi.org/10.1002/9781118500156.ch5openalex-snapshot
Molecular Mechanisms of Transposon Epigenetic Regulation
inferred← citeshttps://doi.org/10.1002/9781118552872.ch18openalex-snapshot
Chromatin and Small RNA Regulation of Nucleolar Dominance
inferred← citeshttps://doi.org/10.1002/9781118764374.ch8openalex-snapshot
Epigenetic regulation of abiotic stress responses in plants
inferred← citeshttps://doi.org/10.1007/978-1-4939-3792-9_14openalex-snapshot
Analysis of rRNA Gene Methylation in Arabidopsis thaliana by CHEF-Conventional 2D Gel Electrophoresis
inferred← citeshttps://doi.org/10.1007/978-3-319-55520-1_21openalex-snapshot
Rice Epigenomics: How Does Epigenetic Manipulation of Crops Contribute to Agriculture?
inferred← citeshttps://doi.org/10.1007/978-3-642-19454-2_15openalex-snapshot
Mechanisms Linking Cytosine Methylation to Histone Modification in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1007/978-3-642-19454-2_26openalex-snapshot
Pol IV-Dependent siRNAs in Plants
inferred← citeshttps://doi.org/10.1007/s00018-021-03794-xopenalex-snapshot
Histone acetylation dynamics regulating plant development and stress responses
inferred← citeshttps://doi.org/10.1007/s00299-013-1393-6openalex-snapshot
Histone deacetylases and their functions in plants
inferred← citeshttps://doi.org/10.1007/s00412-011-0331-zopenalex-snapshot
Immediate unidirectional epigenetic reprogramming of NORs occurs independently of rDNA rearrangements in synthetic and natural forms of a polyploid species Brassica napus
inferred← citeshttps://doi.org/10.1007/s10265-019-01124-8openalex-snapshot
Intracellular localization of histone deacetylase HDA6 in plants
inferred← citeshttps://doi.org/10.1007/s10265-020-01201-3openalex-snapshot
Nucleolus-associated chromatin domains are maintained under heat stress, despite nucleolar reorganization in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1007/s10265-024-01550-3openalex-snapshot
Regulation of heterochromatin organization in plants
inferred← citeshttps://doi.org/10.1007/s11103-016-0524-1openalex-snapshot
Variation of 45S rDNA intergenic spacers in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1007/s11295-024-01640-2openalex-snapshot
DNA-(cytosine-C5) methyltransferases and demethylases in Theobroma cacao: insights into genomic features, phylogenetic relationships, and protein–protein interactions
inferred← citeshttps://doi.org/10.1007/s11427-019-1587-xopenalex-snapshot
Functions and mechanisms of plant histone deacetylases
inferred← citeshttps://doi.org/10.1007/s12038-016-9658-1openalex-snapshot
AtMBD6, a methyl CpG binding domain protein, maintains gene silencing in Arabidopsis by interacting with RNA binding proteins
inferred← citeshttps://doi.org/10.1007/s13237-022-00400-8openalex-snapshot
Molecular and epigenetic basis of heat stress responses and acclimatization in plants
inferred← citeshttps://doi.org/10.1007/s13562-020-00610-8openalex-snapshot
Together we are on together we are off -a conserved rule for ribosomal RNA (rRNA) gene regulation?
inferred← citeshttps://doi.org/10.1007/s13562-023-00831-7openalex-snapshot
Characterization of a new histone deacetylase 6 (hda6-11) mutant allele in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1016/b978-0-323-99688-4.00009-2openalex-snapshot
Viroid infection and host epigenetic alterations
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2011.05.002openalex-snapshot
siRNA-mediated chromatin maintenance and its function in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2016.08.004openalex-snapshot
The RNAs of RNA-directed DNA methylation
inferred← citeshttps://doi.org/10.1016/j.cbpb.2021.110647openalex-snapshot
Genome-wide DNA methylation profiles provide insight into epigenetic regulation of red and white muscle development in Chinese perch Siniperca chuatsi
inferred← citeshttps://doi.org/10.1016/j.cell.2012.10.054openalex-snapshot
Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
inferred← citeshttps://doi.org/10.1016/j.celrep.2016.07.016openalex-snapshot
Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome
inferred← citeshttps://doi.org/10.1016/j.gene.2013.01.060openalex-snapshot
Heterochromatin dynamics during developmental transitions in Arabidopsis — a focus on ribosomal DNA loci
inferred← citeshttps://doi.org/10.1016/j.gene.2014.09.023openalex-snapshot
Nucleolin: Dual roles in rDNA chromatin transcription
inferred← citeshttps://doi.org/10.1016/j.molcel.2014.02.019openalex-snapshot
A Two-Step Process for Epigenetic Inheritance in Arabidopsis
inferred← citeshttps://doi.org/10.1016/j.molp.2017.10.002openalex-snapshot
Specifications of Targeting Heterochromatin Modifications in Plants
inferred← citeshttps://doi.org/10.1016/j.plantsci.2023.111639openalex-snapshot
Arabidopsis plants overexpressing additional copies of heat shock protein Hsp101 showed high heat tolerance and endo-gene silencing
inferred← citeshttps://doi.org/10.1016/j.scienta.2026.114899openalex-snapshot
Multi-omic insights into genetic diversity and chilling-tolerant potential in the somatic hybrid Citrus aurantium + Citrus sinensis
inferred← citeshttps://doi.org/10.1016/j.tig.2019.07.006openalex-snapshot
Mechanisms of rDNA Copy Number Maintenance
inferred← citeshttps://doi.org/10.1016/j.tplants.2011.10.008openalex-snapshot
Long noncoding RNA: unveiling hidden layer of gene regulatory networks
inferred← citeshttps://doi.org/10.1016/j.virusres.2022.198844openalex-snapshot
Plant epigenome alterations: an emergent player in viroid-host interactions
inferred← citeshttps://doi.org/10.1038/cr.2011.23openalex-snapshot
Regulation and function of DNA methylation in plants and animals
inferred← citeshttps://doi.org/10.1038/ncomms3301openalex-snapshot
Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin
inferred← citeshttps://doi.org/10.1038/nplants.2017.97openalex-snapshot
Acetate-mediated novel survival strategy against drought in plants
inferred← citeshttps://doi.org/10.1038/nrm3152openalex-snapshot
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
inferred← citeshttps://doi.org/10.1038/s41467-018-06965-wopenalex-snapshot
Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
inferred← citeshttps://doi.org/10.1038/s41467-019-12379-zopenalex-snapshot
FIERY1 promotes microRNA accumulation by suppressing rRNA-derived small interfering RNAs in Arabidopsis
inferred← citeshttps://doi.org/10.1038/s41598-017-11517-1openalex-snapshot
Hypo-hydroxymethylation of rRNA genes in the precocious Eriocheir sinensis testes revealed using hMeDIP-seq
inferred← citeshttps://doi.org/10.1038/srep17832openalex-snapshot
Two domain-disrupted hda6 alleles have opposite epigenetic effects on transgenes and some endogenous targets
inferred← citeshttps://doi.org/10.1042/ebc20200006openalex-snapshot
The diversity of post-transcriptional gene silencing mediated by small silencing RNAs in plants
inferred← citeshttps://doi.org/10.1073/pnas.1418564111openalex-snapshot
The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes
inferred← citeshttps://doi.org/10.1073/pnas.1608140113openalex-snapshot
Selective nucleolus organizer inactivation in Arabidopsis is a chromosome position-effect phenomenon
inferred← citeshttps://doi.org/10.1073/pnas.1700368114openalex-snapshot
Hybrid incompatibility caused by an epiallele
inferred← citeshttps://doi.org/10.1073/pnas.1904143116openalex-snapshot
Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis
inferred← citeshttps://doi.org/10.1080/15476286.2022.2071517openalex-snapshot
Upon heat stress processing of ribosomal RNA precursors into mature rRNAs is compromised after cleavage at primary P site in Arabidopsis thalian a
inferred← citeshttps://doi.org/10.1080/19491034.2016.1236167openalex-snapshot
Plant nucleolar DNA: Green light shed on the role of Nucleolin in genome organization
inferred← citeshttps://doi.org/10.1080/19491034.2019.1591106openalex-snapshot
Ribosomal RNA genes shape chromatin domains associating with the nucleolus
inferred← citeshttps://doi.org/10.1080/21541264.2020.1825906openalex-snapshot
Non-coding RNA polymerases that silence transposable elements and reprogram gene expression in plants
inferred← citeshttps://doi.org/10.1093/bfgp/elv025openalex-snapshot
The roles of cross-talk epigenetic patterns inArabidopsis thaliana
inferred← citeshttps://doi.org/10.1093/jxb/erad180openalex-snapshot
NICOTIANAMINE SYNTHASE activity affects nucleolar iron accumulation and impacts rDNA silencing and RNA methylation in Arabidopsis
inferred← citeshttps://doi.org/10.1093/jxb/ers059openalex-snapshot
HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis
inferred← citeshttps://doi.org/10.1093/jxb/erw353openalex-snapshot
Changes in the DNA methylation pattern of the host male gametophyte of viroid-infected cucumber plants
inferred← citeshttps://doi.org/10.1093/mp/sst023openalex-snapshot
The RdDM Pathway Is Required for Basal Heat Tolerance in Arabidopsis
inferred← citeshttps://doi.org/10.1093/mp/ssu033openalex-snapshot
Transcriptional Repression by Histone Deacetylases in Plants
inferred← citeshttps://doi.org/10.1093/mp/ssu075openalex-snapshot
Non-Coding RNA Transcription and RNA-Directed DNA Methylation in Arabidopsis
inferred← citeshttps://doi.org/10.1093/nar/gkab662openalex-snapshot
Antisense ribosomal siRNAs inhibit RNA polymerase I-directed transcription inC. elegans
inferred← citeshttps://doi.org/10.1093/nar/gkab706openalex-snapshot
AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation inArabidopsis thaliana
inferred← citeshttps://doi.org/10.1093/nar/gkt968openalex-snapshot
A pathogenic non-coding RNA induces changes in dynamic DNA methylation of ribosomal RNA genes in host plants
inferred← citeshttps://doi.org/10.1093/nar/gkw067openalex-snapshot
Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases inArabidopsis thaliana
inferred← citeshttps://doi.org/10.1093/pcp/pcr177openalex-snapshot
Regulation of Pol I-Transcribed 45S rDNA and Pol III-Transcribed 5S rDNA in Arabidopsis
inferred← citeshttps://doi.org/10.1093/pcp/pcs004openalex-snapshot
An Epigenetic Integrator: New Insights into Genome Regulation, Environmental Stress Responses and Developmental Controls by HISTONE DEACETYLASE 6
inferred← citeshttps://doi.org/10.1093/pcp/pcw095openalex-snapshot
HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth
inferred← citeshttps://doi.org/10.1093/plcell/koad313openalex-snapshot
The MBD–ACD DNA methylation reader complex recruits MICRORCHIDIA6 to regulate ribosomal RNA gene expression in Arabidopsis
inferred← citeshttps://doi.org/10.1093/plphys/kiag136openalex-snapshot
Plastid perturbations trigger epigenetic programs during environmental sensing in plants
inferred← citeshttps://doi.org/10.1101/2020.06.17.156299openalex-snapshot
Multiple epigenetic layers accompany the spatial distribution of ribosomal genes in Arabidopsis
inferred← citeshttps://doi.org/10.1101/2020.11.23.395020openalex-snapshot
Co-surveillance of ribosomal RNA by the exosome complex and nucleolar RNAi in C. elegans
inferred← citeshttps://doi.org/10.1101/2022.01.06.475203openalex-snapshot
Multiomic analisys reveals that viroid infection induces a temporal reprograming of plant-defence mechanisms at multiple regulatory levels
inferred← citeshttps://doi.org/10.1101/2023.06.07.544131openalex-snapshot
Sequence and epigenetic landscapes of active and silenced nucleolus organizers in Arabidopsis
inferred← citeshttps://doi.org/10.1101/gad.182865.111openalex-snapshot
Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis
inferred← citeshttps://doi.org/10.1101/gad.221648.113openalex-snapshot
Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states
inferred← citeshttps://doi.org/10.1101/gad.273755.115openalex-snapshot
Chromosome-specific NOR inactivation explains selective rRNA gene silencing and dosage control in Arabidopsis
inferred← citeshttps://doi.org/10.1101/gad.283838.116openalex-snapshot
Nucleolar organizer regions: genomic ‘dark matter’ requiring illumination
inferred← citeshttps://doi.org/10.1101/sqb.2012.77.015099openalex-snapshot
Use of Forward Genetic Screens to Identify Genes Required for RNA-Directed DNA Methylation in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1101/sqb.2019.84.039842openalex-snapshot
Reconstitution of siRNA Biogenesis In Vitro: Novel Reaction Mechanisms and RNA Channeling in the RNA-Directed DNA Methylation Pathway
inferred← citeshttps://doi.org/10.1104/pp.111.174417openalex-snapshot
HISTONE DEACETYLASE6 Interacts with FLOWERING LOCUS D and Regulates Flowering in Arabidopsis
inferred← citeshttps://doi.org/10.1104/pp.111.184275openalex-snapshot
HDA6 Directly Interacts with DNA Methyltransferase MET1 and Maintains Transposable Element Silencing in Arabidopsis
inferred← citeshttps://doi.org/10.1104/pp.15.00177openalex-snapshot
HISTONE DEACETYLASE6 Controls Gene Expression Patterning and DNA Methylation-Independent Euchromatic Silencing
inferred← citeshttps://doi.org/10.1104/pp.15.00821openalex-snapshot
HISTONE DEACETYLASE6-Defective Mutants Show Increased Expression and Acetylation of ENHANCER OF TRIPTYCHON AND CAPRICE1 and GLABRA2 with Small But Significant Effects on Root Epidermis Cellular Pattern
inferred← citeshttps://doi.org/10.1104/pp.19.00793openalex-snapshot
HISTONE DEACETYLASE 9 Functions with Polycomb Silencing to Repress FLOWERING LOCUS C Expression
inferred← citeshttps://doi.org/10.1105/tpc.114.123893openalex-snapshot
A Duplicated NUCLEOLIN Gene with Antagonistic Activity Is Required for Chromatin Organization of Silent 45S rDNA in Arabidopsis
inferred← citeshttps://doi.org/10.1105/tpc.114.129841openalex-snapshot
Asymmetric Epigenetic Modification and Elimination of rDNA Sequences by Polyploidization in Wheat
inferred← citeshttps://doi.org/10.1105/tpc.15.00135openalex-snapshot
Arabidopsis MAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing
inferred← citeshttps://doi.org/10.1105/tpc.17.00626openalex-snapshot
Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing
inferred← citeshttps://doi.org/10.1105/tpc.18.00245openalex-snapshot
Arabidopsis RIBOSOMAL RNA PROCESSING7 Is Required for 18S rRNA Maturation
inferred← citeshttps://doi.org/10.1105/tpc.18.00570openalex-snapshot
An Effector from the Cyst Nematode Heterodera schachtii Derepresses Host rRNA Genes by Altering Histone Acetylation
inferred← citeshttps://doi.org/10.1105/tpc.18.00874openalex-snapshot
Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors
inferred← citeshttps://doi.org/10.1105/tpc.18.00893openalex-snapshot
Worming into the Plant Chromatin: A Nematode Effector Influences Host Histone Acetylation
inferred← citeshttps://doi.org/10.1111/jipb.12060openalex-snapshot
Involvement of Histone Modifications in Plant Abiotic Stress Responses
inferred← citeshttps://doi.org/10.1111/jipb.13108openalex-snapshot
A domesticated Harbinger transposase forms a complex with HDA6 and promotes histone H3 deacetylation at genes but not TEs in Arabidopsis
inferred← citeshttps://doi.org/10.1111/mpp.13022openalex-snapshot
Hop stunt viroid: A polyphagous pathogenic RNA that has shed light on viroid–host interactions
inferred← citeshttps://doi.org/10.1111/nph.13161openalex-snapshot
Repression of flowering under a noninductive photoperiod by the HDA 9‐ AGL 19‐ FT module in Arabidopsis
inferred← citeshttps://doi.org/10.1111/nph.14001openalex-snapshot
A pathogenic long noncoding RNA redesigns the epigenetic landscape of the infected cells by subverting host Histone Deacetylase 6 activity
inferred← citeshttps://doi.org/10.1111/pce.14647openalex-snapshot
Integrative time‐scale and multi‐omics analysis of host responses to viroid infection
inferred← citeshttps://doi.org/10.1111/plb.12935openalex-snapshot
Target of rapamycin, a master regulator of multiple signalling pathways and a potential candidate gene for crop improvement
inferred← citeshttps://doi.org/10.1111/tpj.12533openalex-snapshot
The A rabidopsis STRESS RESPONSE SUPPRESSOR DEAD ‐box RNA helicases are nucleolar‐ and chromocenter‐localized proteins that undergo stress‐mediated relocalization and are involved in epigenetic gene silencing
inferred← citeshttps://doi.org/10.1111/tpj.12822openalex-snapshot
Chromatin dynamics of plant telomeres and ribosomal genes
inferred← citeshttps://doi.org/10.1111/tpj.13257openalex-snapshot
Phenotypic reversion in fas mutants of Arabidopsis thaliana by reintroduction of FAS genes: variable recovery of telomeres with major spatial rearrangements and transcriptional reprogramming of 45S rDNA genes
inferred← citeshttps://doi.org/10.1111/tpj.14229openalex-snapshot
The HDA 19 histone deacetylase complex is involved in the regulation of flowering time in a photoperiod‐dependent manner
inferred← citeshttps://doi.org/10.1111/tpj.15130openalex-snapshot
Nucleolar rDNA folds into condensed foci with a specific combination of epigenetic marks
inferred← citeshttps://doi.org/10.1111/tpj.15302openalex-snapshot
FVE promotes RNA‐directed DNA methylation by facilitating the association of RNA polymerase V with chromatin
inferred← citeshttps://doi.org/10.1111/tpj.16318openalex-snapshot
Reaching for the off switch in nucleolar dominance
inferred← citeshttps://doi.org/10.1111/tpj.16320openalex-snapshot
New insights on the evolution of nucleolar dominance in newly resynthesized hexaploid wheat Triticum zhukovskyi
inferred← citeshttps://doi.org/10.1126/sciadv.adj4509openalex-snapshot
Sequence and epigenetic landscapes of active and silent nucleolus organizer regions in Arabidopsis
inferred← citeshttps://doi.org/10.1128/jvi.00036-18openalex-snapshot
Tomato Yellow Leaf Curl Virus V2 Interacts with Host Histone Deacetylase 6 To Suppress Methylation-Mediated Transcriptional Gene Silencing in Plants
inferred← citeshttps://doi.org/10.1128/mmbr.00005-16openalex-snapshot
The Epigenetic Pathways to Ribosomal DNA Silencing
inferred← citeshttps://doi.org/10.1134/s0026893319020146openalex-snapshot
Strategies for Optimizing Recombinant Protein Synthesis in Plant Cells: Classical Approaches and New Directions
inferred← citeshttps://doi.org/10.1134/s0026898419020149openalex-snapshot
Стратегии оптимизации синтеза рекомбинантных белков в растительных клетках: классические подходы и новые направления
inferred← citeshttps://doi.org/10.1146/annurev-arplant-083123-054357openalex-snapshot
Molecular Mechanisms Underlying the Establishment, Maintenance, and Removal of DNA Methylation in Plants
inferred← citeshttps://doi.org/10.1146/annurev-genet-112414-055048openalex-snapshot
Accessing the Inaccessible: The Organization, Transcription, Replication, and Repair of Heterochromatin in Plants
inferred← citeshttps://doi.org/10.1186/s12915-022-01273-8openalex-snapshot
Jasmonates and Histone deacetylase 6 activate Arabidopsis genome-wide histone acetylation and methylation during the early acute stress response
inferred← citeshttps://doi.org/10.1242/jcs.184937openalex-snapshot
A wide reprogramming of histone H3 modifications during male meiosis I in rice is dependent on the Argonaute protein MEL1
inferred← citeshttps://doi.org/10.1242/jcs.202416openalex-snapshot
Replication of ribosomal DNA in Arabidopsis occurs both inside and outside the nucleolus during S phase progression
inferred← citeshttps://doi.org/10.1270/jsbbs.15114openalex-snapshot
The importance of reproductive barriers and the effect of allopolyploidization on crop breeding
inferred← citeshttps://doi.org/10.1371/journal.pgen.1001225openalex-snapshot
Nucleolin Is Required for DNA Methylation State and the Expression of rRNA Gene Variants in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1371/journal.pgen.1002055openalex-snapshot
Arabidopsis HDA6 Regulates Locus-Directed Heterochromatin Silencing in Cooperation with MET1
inferred← citeshttps://doi.org/10.1371/journal.pgen.1002366openalex-snapshot
Arabidopsis Homologs of Retinoblastoma-Associated Protein 46/48 Associate with a Histone Deacetylase to Act Redundantly in Chromatin Silencing
inferred← citeshttps://doi.org/10.1371/journal.pgen.1003114openalex-snapshot
Histone Deacetylase HDA6 Is Functionally Associated with AS1 in Repression of KNOX Genes in Arabidopsis
inferred← citeshttps://doi.org/10.1371/journal.pgen.1011136openalex-snapshot
RNA polymerase II-mediated rDNA transcription mediates rDNA copy number expansion in Drosophila
inferred← citeshttps://doi.org/10.1371/journal.pone.0025756openalex-snapshot
An Atypical Epigenetic Mechanism Affects Uniparental Expression of Pol IV-Dependent siRNAs
inferred← citeshttps://doi.org/10.15252/embj.201798770openalex-snapshot
The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing
inferred← citeshttps://doi.org/10.1534/g3.117.040204openalex-snapshot
Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1534/genetics.112.144634openalex-snapshot
Unusual Case of Apparent Hypermutation in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1534/genetics.117.300625openalex-snapshot
Control of Maize Vegetative and Reproductive Development, Fertility, and rRNAs Silencing by HISTONE DEACETYLASE 108
inferred← citeshttps://doi.org/10.1534/genetics.119.302471openalex-snapshot
Regulation of Nucleolar Dominance in Drosophila melanogaster
inferred← citeshttps://doi.org/10.20868/upm.thesis.52923openalex-snapshot
Synthetic biology tools for the study of relevant factors in the control of transgene expression
inferred← citeshttps://doi.org/10.3389/fpls.2020.593692openalex-snapshot
G4 Structures in Control of Replication and Transcription of rRNA Genes
inferred← citeshttps://doi.org/10.3389/fpls.2022.807884openalex-snapshot
Wheat Breeding, Transcription Factories, and Genetic Interactions: New Perspectives
inferred← citeshttps://doi.org/10.3390/cells11081335openalex-snapshot
Mycoviroids: Fungi as Hosts and Vectors of Viroids
inferred← citeshttps://doi.org/10.3390/cells8060579openalex-snapshot
Genome Organization in and around the Nucleolus
inferred← citeshttps://doi.org/10.3390/ijms22010117openalex-snapshot
Plant Responses to Heat Stress: Physiology, Transcription, Noncoding RNAs, and Epigenetics
inferred← citeshttps://doi.org/10.3390/ijms23136929openalex-snapshot
Reproductive-Stage Heat Stress in Cereals: Impact, Plant Responses and Strategies for Tolerance Improvement
inferred← citeshttps://doi.org/10.3390/ijms25147540openalex-snapshot
Transcriptional Silencing of 35S rDNA in Tragopogon porrifolius Correlates with Cytosine Methylation in Sequence-Specific Manner
inferred← citeshttps://doi.org/10.3390/ncrna10020019openalex-snapshot
Functions of RNAi Pathways in Ribosomal RNA Regulation
inferred← citeshttps://doi.org/10.3390/plants12142722openalex-snapshot
45S rDNA Diversity In Natura as One Step towards Ribosomal Heterogeneity in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.3390/plants14010061openalex-snapshot
Viroids and Retrozymes: Plant Circular RNAs Capable of Autonomous Replication
inferred← citeshttps://doi.org/10.3390/plants15060940openalex-snapshot
Regulation of Pre-rRNA Processing in Plant: Mechanisms, Plasticity, and Developmental Implications
inferred← citeshttps://doi.org/10.3390/v5112659openalex-snapshot
Involvement of Eukaryotic Small RNA Pathways in Host Defense and Viral Pathogenesis
inferred← citeshttps://doi.org/10.3410/f.735730345.793577219openalex-snapshot
Faculty Opinions recommendation of Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis.
inferred← citeshttps://doi.org/10.4161/15592324.2014.977729openalex-snapshot
DEAD-box RNA helicases and epigenetic control of abiotic stress-responsive gene expression
inferred← citeshttps://doi.org/10.4161/nucl.2.4.16561openalex-snapshot
Variations in a team: Major and minor variants ofArabidopsisthaliana rDNA genes
inferred← citeshttps://doi.org/10.4161/rna.18668openalex-snapshot
Transcription beyond borders has downstream consequences
inferred← citeshttps://doi.org/10.4995/thesis/10251/183479openalex-snapshot
Novel Insights of Viroid Biology and Host Responses to Their Infection
inferred← citeshttps://doi.org/10.6084/m9.figshare.19579934openalex-snapshot
Additional file 1 of Jasmonates and Histone deacetylase 6 activate Arabidopsis genome-wide histone acetylation and methylation during the early acute stress response
inferred← citeshttps://doi.org/10.70675/19513209z9ae3z4903z9d88z0d9e3ee4a286openalex-snapshot
Le protéasome et le fer : rôles et/ou régulations dans le nucléole d’Arabidopsis thaliana
inferred← citeshttps://doi.org/10.70675/5234ca91za18ez456fza7fez49897755e7a6openalex-snapshot
Dynamiques chromatiniennes au cours de la photomorphogenèse chez Arabidopsis thaliana
inferred← citeshttps://doi.org/10.70675/616bf1fdz6ee6z425bz9638z57be14c4f068openalex-snapshot
Etude fonctionnelle du gène REBELOTE chez Arabidopsis thaliana
inferred← citeshttps://doi.org/10.70675/7bbc6175zfa5dz4fcez85dcz8ef71ac3d05dopenalex-snapshot
Caractérisation de la fonction de l'ARN polymérase ADN-dépendante IV dans la surveillance des génomes
inferred← citeshttps://doi.org/10.70675/7c36bc77zbcf8z4d6ez988dzdd814ec9a952openalex-snapshot
Role of the immune receptor CD47 in mouse model of non-infectious uveitis
inferred← citeshttps://doi.org/10.70675/af28e756z3028z4513zb8d6z8a6f8f8f47a7openalex-snapshot
L'importance du nucléole et des gènes d'ARN ribosomique 45S dans l'organisation 3D et la stabilité du génome chez Arabidopsis thaliana.
inferred← citeshttps://doi.org/10.7554/elife.17214openalex-snapshot
POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis
inferred← citeshttps://doi.org/10.7554/elife.80684openalex-snapshot
Monoallelically expressed noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression
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