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Gene duplication and genetic innovation in cereal genomes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-3-642-14228-4openalex-snapshot
Wild Crop Relatives: Genomic and Breeding Resources
inferredcites →https://doi.org/10.1007/s00122-006-0232-3openalex-snapshot
Alignment of genetic maps and QTLs between inter- and intra-specific sorghum populations
inferredcites →https://doi.org/10.1016/j.molp.2015.04.004openalex-snapshot
Genome Alignment Spanning Major Poaceae Lineages Reveals Heterogeneous Evolutionary Rates and Alters Inferred Dates for Key Evolutionary Events
inferredcites →https://doi.org/10.1038/nature06148openalex-snapshot
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
inferredcites →https://doi.org/10.1038/nature07723openalex-snapshot
The Sorghum bicolor genome and the diversification of grasses
inferredcites →https://doi.org/10.1038/nature09916openalex-snapshot
Ancestral polyploidy in seed plants and angiosperms
inferredcites →https://doi.org/10.1038/nature11119openalex-snapshot
The tomato genome sequence provides insights into fleshy fruit evolution
inferredcites →https://doi.org/10.1038/nature11532openalex-snapshot
A map of rice genome variation reveals the origin of cultivated rice
inferredcites →https://doi.org/10.1038/nature11798openalex-snapshot
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
inferredcites →https://doi.org/10.1038/nbt.2050openalex-snapshot
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
inferredcites →https://doi.org/10.1038/ncomms3320openalex-snapshot
Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum
inferredcites →https://doi.org/10.1038/ng.2309openalex-snapshot
Comparative population genomics of maize domestication and improvement
inferredcites →https://doi.org/10.1038/ng.2313openalex-snapshot
Maize HapMap2 identifies extant variation from a genome in flux
inferredcites →https://doi.org/10.1038/ng.695openalex-snapshot
Genome-wide association studies of 14 agronomic traits in rice landraces
inferredcites →https://doi.org/10.1038/ng.919openalex-snapshot
The genome of the mesopolyploid crop species Brassica rapa
inferredcites →https://doi.org/10.1038/nrg2600openalex-snapshot
The evolutionary significance of ancient genome duplications
inferredcites →https://doi.org/10.1073/pnas.0307901101openalex-snapshot
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
inferredcites →https://doi.org/10.1073/pnas.0507782103openalex-snapshot
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
inferredcites →https://doi.org/10.1073/pnas.0908007107openalex-snapshot
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
inferredcites →https://doi.org/10.1073/pnas.1215985110openalex-snapshot
Population genomic and genome-wide association studies of agroclimatic traits in sorghum
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/bioinformatics/18.2.337openalex-snapshot
Generating samples under a Wright–Fisher neutral model of genetic variation
inferredcites →https://doi.org/10.1093/bioinformatics/btg316openalex-snapshot
libsequence: a C++ class library for evolutionary genetic analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btl097openalex-snapshot
CAFE: a computational tool for the study of gene family evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btm404openalex-snapshot
Clustal W and Clustal X version 2.0
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btt150openalex-snapshot
MCScanX-transposed : detecting transposed gene duplications based on multiple colinearity scans
inferredcites →https://doi.org/10.1093/gbe/evw293openalex-snapshot
Analysis of three sugarcane homo/homeologous regions suggests independent polyploidization events of Saccharum officinarum and Saccharum spontaneum
inferredcites →https://doi.org/10.1093/genetics/157.4.1773openalex-snapshot
Genetic and Nongenetic Bases for the L-Shaped Distribution of Quantitative Trait Loci Effects
inferredcites →https://doi.org/10.1093/nar/gkr407openalex-snapshot
Predicting the functional impact of protein mutations: application to cancer genomics
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I-TASSER server: new development for protein structure and function predictions
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.3567505openalex-snapshot
Estimating the tempo and mode of gene family evolution from comparative genomic data
inferredcites →https://doi.org/10.1101/gr.3681406openalex-snapshot
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
inferredcites →https://doi.org/10.1104/pp.112.213447openalex-snapshot
Function Relaxation Followed by Diversifying Selection after Whole-Genome Duplication in Flowering Plants
inferredcites →https://doi.org/10.1105/tpc.021410openalex-snapshot
Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]
inferredcites →https://doi.org/10.1105/tpc.111.086629openalex-snapshot
Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives
inferredcites →https://doi.org/10.1105/tpc.114.127597openalex-snapshot
Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots
inferredcites →https://doi.org/10.1126/science.1178534openalex-snapshot
The B73 Maize Genome: Complexity, Diversity, and Dynamics
inferredcites →https://doi.org/10.1126/science.1195203openalex-snapshot
Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome
inferredcites →https://doi.org/10.1146/annurev.genet.38.072902.092831openalex-snapshot
Duplication and Divergence: The Evolution of New Genes and Old Ideas
inferredcites →https://doi.org/10.1186/gb-2011-12-11-r114openalex-snapshot
Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
inferredcites →https://doi.org/10.1186/gb-2013-14-6-r68openalex-snapshot
Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Mitochondrial DNA (MtDNA) Genetic Variability of Cytochrome B (CTYB) in Three Populations of Native Rabbits in Egypt
inferred← citeshttps://doi.org/10.1007/s00239-024-10198-5openalex-snapshot
Unveiling the Genomic Symphony: Identification Cultivar-Specific Genes and Enhanced Insights on Sweet Sorghum Genomes Through Comprehensive superTranscriptomic Analysis
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inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2022.12.326openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.repbre.2024.06.002openalex-snapshot
Mitochondrial DNA (mtDNA) genetic variability of cytochrome B gene (CYTB) in three populations of native rabbits in Egypt
inferred← citeshttps://doi.org/10.1038/s41467-022-29561-5openalex-snapshot
Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax
inferred← citeshttps://doi.org/10.1038/s41467-024-47428-9openalex-snapshot
Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages
inferred← citeshttps://doi.org/10.1038/s41477-019-0563-0openalex-snapshot
Allelochemicals targeted to balance competing selections in African agroecosystems
inferred← citeshttps://doi.org/10.1038/s41596-024-00968-2openalex-snapshot
Detection of colinear blocks and synteny and evolutionary analyses based on utilization of MCScanX
inferred← citeshttps://doi.org/10.1038/s41597-020-0438-2openalex-snapshot
A platinum standard pan-genome resource that represents the population structure of Asian rice
inferred← citeshttps://doi.org/10.1080/15592324.2023.2243064openalex-snapshot
Comparative analysis of sorghum (C4) and rice (C3) plant headspace volatiles induced by artificial herbivory
inferred← citeshttps://doi.org/10.1093/plcell/koac076openalex-snapshot
The multiple fates of gene duplications: Deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation
inferred← citeshttps://doi.org/10.1093/plcell/koae045openalex-snapshot
Genome organization and botanical diversity
inferred← citeshttps://doi.org/10.1101/2019.12.29.888347openalex-snapshot
Twelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice
inferred← citeshttps://doi.org/10.1111/jipb.70098openalex-snapshot
Structural variation drives rhizome innovation and adaptive divergence in sister Medicago species
inferred← citeshttps://doi.org/10.1134/s1022795425701030openalex-snapshot
Changes in Genomes and Karyotypes during Speciation and Progressive Evolution of Plants
inferred← citeshttps://doi.org/10.1186/s12864-020-6773-zopenalex-snapshot
Disequilibrium evolution of the Fructose-1,6-bisphosphatase gene family leads to their functional biodiversity in Gossypium species
inferred← citeshttps://doi.org/10.1186/s12870-020-02419-yopenalex-snapshot
Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.1186/s12870-022-03502-2openalex-snapshot
Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions
inferred← citeshttps://doi.org/10.1186/s12870-025-06776-4openalex-snapshot
Transcriptome-wide identification and systematic analysis of the Retrotransposon genes and their roles in ginsenoside biosynthesis in Panax ginseng
inferred← citeshttps://doi.org/10.1186/s13068-019-1612-7openalex-snapshot
Common metabolic networks contribute to carbon sink strength of sorghum internodes: implications for bioenergy improvement
inferred← citeshttps://doi.org/10.1360/ssv-2021-0023openalex-snapshot
Genome-wide identification and expression analysis of the SMXL gene family in cotton
inferred← citeshttps://doi.org/10.14258/turczaninowia.25.4.12openalex-snapshot
Tandem duplications, eupolyploidy and secondary diploidization – genetic mechanisms of plant speciation and progressive evolution
inferred← citeshttps://doi.org/10.21203/rs.3.rs-45627/v1openalex-snapshot
SSRG evolution in the genus Oryza
inferred← citeshttps://doi.org/10.21203/rs.3.rs-882461/v1openalex-snapshot
Full-length Transcriptome Reconstruction Reveals Genetic Differences in Hybrids of Oryza Sativa and Oryza Punctata With Different Ploidy and Genome Compositions
inferred← citeshttps://doi.org/10.2478/s11756-020-00625-5openalex-snapshot
Invasive Johnsongrass, a threat to native grasslands and agriculture
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RANCANG BANGUN RANTAI PASOK AGROINDUSTRI SORGHUM DI JAWA BARAT: KAJIAN LITERATUR DAN AGENDA RISET
inferred← citeshttps://doi.org/10.31274/td-20240617-133openalex-snapshot
An evolutionary history of the Ga1 locus and an investigation of the relationship between cross incompatibility loci and total PME activity in maize reproductive tissues
inferred← citeshttps://doi.org/10.32604/phyton.2023.024338openalex-snapshot
Identification and Characterization of ZF-HD Genes in Response to Abscisic Acid and Abiotic Stresses in Maize
inferred← citeshttps://doi.org/10.3389/fgene.2021.801218openalex-snapshot
Comparative Analysis of HSF Genes From Secale cereale and its Triticeae Relatives Reveal Ancient and Recent Gene Expansions
inferred← citeshttps://doi.org/10.3389/fpls.2020.01231openalex-snapshot
Fertile Tetraploids: New Resources for Future Rice Breeding?
inferred← citeshttps://doi.org/10.3389/fpls.2020.575412openalex-snapshot
How Hybrid Breakdown Can Be Handled in Rice Crossbreeding?
inferred← citeshttps://doi.org/10.3389/fpls.2021.666342openalex-snapshot
Sorghum Pan-Genome Explores the Functional Utility for Genomic-Assisted Breeding to Accelerate the Genetic Gain
inferred← citeshttps://doi.org/10.3389/fpls.2021.668623openalex-snapshot
The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns
inferred← citeshttps://doi.org/10.3389/fpls.2022.971999openalex-snapshot
Genome-wide analysis of tandem duplicated genes and their expression under salt stress in seashore paspalum
inferred← citeshttps://doi.org/10.3390/agronomy15020281openalex-snapshot
The DUF506 Gene Family in Triticum aestivum: Genome-Wide Identification and Expression Profiling Under Salt Stress
inferred← citeshttps://doi.org/10.3390/cells11213461openalex-snapshot
Analysis of Homologous Regions of Small RNAs MIR397 and MIR408 Reveals the Conservation of Microsynteny among Rice Crop-Wild Relatives
inferred← citeshttps://doi.org/10.3390/cells8050490openalex-snapshot
Integrative Analysis of the Wheat PHT1 Gene Family Reveals A Novel Member Involved in Arbuscular Mycorrhizal Phosphate Transport and Immunity
inferred← citeshttps://doi.org/10.3390/ecologies7020051openalex-snapshot
Ecological Invasion, Impact, and Management of Johnsongrass [Sorghum halepense (L.) Pers.] for Sustainable Livestock Production: A Systematic Review
inferred← citeshttps://doi.org/10.3390/plants10061057openalex-snapshot
Starch Synthesis-Related Genes (SSRG) Evolution in the Genus Oryza
inferred← citeshttps://doi.org/10.4995/wrs.2020.12219openalex-snapshot
Status and origin of Egyptian local rabbits in comparison with Spanish common rabbits using mitochondrial DNA sequence analysis
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inferred← citeshttps://doi.org/10.6084/m9.figshare.12262064openalex-snapshot
Additional file 10 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262067openalex-snapshot
Additional file 11 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262070openalex-snapshot
Additional file 12 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262079openalex-snapshot
Additional file 13 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262085openalex-snapshot
Additional file 14 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262091openalex-snapshot
Additional file 15 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262094openalex-snapshot
Additional file 16 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262103openalex-snapshot
Additional file 17 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262109openalex-snapshot
Additional file 1 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262115openalex-snapshot
Additional file 2 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262121openalex-snapshot
Additional file 3 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262127openalex-snapshot
Additional file 4 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262133openalex-snapshot
Additional file 5 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262139openalex-snapshot
Additional file 6 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262145openalex-snapshot
Additional file 7 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262148openalex-snapshot
Additional file 8 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262157openalex-snapshot
Additional file 9 of Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency
inferred← citeshttps://doi.org/10.70675/a514c26dz81d4z44aezb5c8zaeb60728b0fbopenalex-snapshot
Expression et régulation épigénétique des gènes homéologues chez le blé tendre
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