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Localization and Dynamics of Nuclear Speckles in Plants

https://doi.org/10.1104/pp.111.186700
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular characterization of the spliceosomal proteins U1A and U2B″ from higher plants.
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Techniques for following the movement of single RNAs in living cells
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Spliceosomal Proteins in Plants
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Regulation of Alternative Splicing of Pre-mRNAs by Stresses
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Plant SR Proteins and Their Functions
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Spatiotemporal Organization of Pre-mRNA Splicing Proteins in Plants
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Cell-to-cell trafficking of RNA and RNA silencing through plasmodesmata
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Plant-specific SR-related protein atSR45a interacts with spliceosomal proteins in plant nucleus
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The Spliceosome: Design Principles of a Dynamic RNP Machine
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Identification of Nuclear Dicing Bodies Containing Proteins for MicroRNA Biogenesis in Living Arabidopsis Plants
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Phytochrome nuclear body: an emerging model to study interphase nuclear dynamics and signaling
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Compartmentalization of the splicing machinery in plant cell nuclei
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Role of plant RNA-binding proteins in development, stress response and genome organization
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Advances in imaging RNA in plants
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Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei
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Single mRNA Tracking in Live Cells
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Modulation of Abscisic Acid Signal Transduction and Biosynthesis by an Sm-like Protein in Arabidopsis
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High mobility of proteins in the mammalian cell nucleus
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Molecular Beacons: Probes that Fluoresce upon Hybridization
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Visualization of RNA–protein interactions in living cells: FMRP and IMP1 interact on mRNAs
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Visualization of molecular interactions using bimolecular fluorescence complementation analysis: Characteristics of protein fragment complementation
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Functional architecture in the cell nucleus
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The SR protein family of splicing factors: master regulators of gene expression
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Nuclear localization and in vivo dynamics of a plant‐specific serine/arginine‐rich protein
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Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
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Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
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Identification of mRNA splicing factors as the endothelial receptor for carbohydrate-dependent lung colonization of cancer cells
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Visualization of Lipid Droplet Composition by Direct Organelle Mass Spectrometry
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Interactions of Arabidopsis RS Domain Containing Cyclophilins with SR Proteins and U1 and U11 Small Nuclear Ribonucleoprotein-specific Proteins Suggest Their Involvement in Pre-mRNA Splicing
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Fluorescence correlation spectroscopy: the technique and its applications
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Use of Fluorescent Protein Tags to Study Nuclear Organization of the Spliceosomal Machinery in Transiently Transformed Living Plant Cells
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Tissue-specific Expression and Dynamic Organization of SR Splicing Factors inArabidopsis
inferredcites →https://doi.org/10.1091/mbc.e09-02-0126openalex-snapshot
Son Is Essential for Nuclear Speckle Organization and Cell Cycle Progression
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UBP1, a novel hnRNP‐like protein that functions at multiple steps of higher plant nuclear pre‐mRNA maturation
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Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
inferredcites →https://doi.org/10.1093/nar/gkn847openalex-snapshot
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
inferredcites →https://doi.org/10.1093/nar/gkp189openalex-snapshot
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs
inferredcites →https://doi.org/10.1093/nar/gkp869openalex-snapshot
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana
inferredcites →https://doi.org/10.1101/cshperspect.a000646openalex-snapshot
Nuclear Speckles
inferredcites →https://doi.org/10.1101/cshperspect.a000711openalex-snapshot
Biogenesis of Nuclear Bodies
inferredcites →https://doi.org/10.1101/gad.1559607openalex-snapshot
Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms
inferredcites →https://doi.org/10.1101/gr.093302.109openalex-snapshot
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
inferredcites →https://doi.org/10.1101/gr.106120.110openalex-snapshot
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
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Characterization of 43 Non-Protein-Coding mRNA Genes in Arabidopsis, Including the MIR162a -Derived Transcripts
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Molecular Characterization and Phylogeny of U2AF35 Homologs in Plants
inferredcites →https://doi.org/10.1104/pp.109.138180openalex-snapshot
Two Alternatively Spliced Isoforms of the Arabidopsis SR45 Protein Have Distinct Roles during Normal Plant Development
inferredcites →https://doi.org/10.1104/pp.110.154740openalex-snapshot
Dynamic Nucleocytoplasmic Shuttling of an Arabidopsis SR Splicing Factor: Role of the RNA-Binding Domains
inferredcites →https://doi.org/10.1105/tpc.011056openalex-snapshot
Alternative Splicing Modulation by a LAMMER Kinase Impinges on Developmental and Transcriptome Expression
inferredcites →https://doi.org/10.1105/tpc.10.10.1637openalex-snapshot
The Plant U1 Small Nuclear Ribonucleoprotein Particle 70K Protein Interacts with Two Novel Serine/Arginine–Rich Proteins
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RAC GTPases in Tobacco and Arabidopsis Mediate Auxin-Induced Formation of Proteolytically Active Nuclear Protein Bodies That Contain AUX/IAA Proteins
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Insights into Nuclear Organization in Plants as Revealed by the Dynamic Distribution ofArabidopsisSR Splicing Factors
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Implementing a Rational and Consistent Nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR Proteins) in Plants
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Functional distribution and dynamics of Arabidopsis SR splicing factors in living plant cells
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Alternative splicing of pre‐mRNAs of Arabidopsis serine/arginine‐rich proteins: regulation by hormones and stresses
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03414.xopenalex-snapshot
A cyclin‐dependent protein kinase, CDKC2, colocalizes with and modulates the distribution of spliceosomal components in Arabidopsis
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Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03065.xopenalex-snapshot
Extensive coupling of alternative splicing of pre‐mRNAs of serine/arginine (SR) genes with nonsense‐mediated decay
inferredcites →https://doi.org/10.1111/j.1600-0854.2008.00824.xopenalex-snapshot
Transport of TMV Movement Protein Particles Associated with the Targeting of RNA to Plasmodesmata
inferredcites →https://doi.org/10.1111/j.1600-0854.2011.01180.xopenalex-snapshot
Reversible Photoswitchable DRONPA‐s Monitors Nucleocytoplasmic Transport of an RNA‐Binding Protein in Transgenic Plants
inferredcites →https://doi.org/10.1111/j.1742-4658.2011.08274.xopenalex-snapshot
Shuttling SR proteins: more than splicing factors
inferredcites →https://doi.org/10.1126/science.1074952openalex-snapshot
A Photoactivatable GFP for Selective Photolabeling of Proteins and Cells
inferredcites →https://doi.org/10.1126/science.1202142openalex-snapshot
Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene
inferredcites →https://doi.org/10.1126/science.270.5244.1980openalex-snapshot
Selective Trafficking of KNOTTED1 Homeodomain Protein and Its mRNA Through Plasmodesmata
inferredcites →https://doi.org/10.1128/mcb.22.12.4346-4357.2002openalex-snapshot
UBA1 and UBA2, Two Proteins That Interact with UBP1, a Multifunctional Effector of Pre-mRNA Maturation in Plants
inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103754openalex-snapshot
Alternative Splicing of Pre-Messenger RNAs in Plants in the Genomic Era
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Fluorescence Proteins, Live-Cell Imaging, and Mechanobiology: Seeing Is Believing
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Fluorescent Proteins and Their Applications in Imaging Living Cells and Tissues
inferredcites →https://doi.org/10.1186/1471-2164-10-558openalex-snapshot
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
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Erratum to: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
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Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii
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The ASRG database: identification and survey of Arabidopsis thalianagenes involved in pre-mRNA splicing
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ATP, phosphorylation and transcription regulate the mobility of plant splicing factors
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The organization of spliceosomal components in the nuclei of higher plants
inferredcites →https://doi.org/10.1242/jcs.114.16.2891openalex-snapshot
Nuclear domains
inferredcites →https://doi.org/10.1261/rna.2226106openalex-snapshot
AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II
inferredcites →https://doi.org/10.1261/rna.2440305openalex-snapshot
Evolutionary conservation of minor U12-type spliceosome between plants and humans
inferredcites →https://doi.org/10.1371/journal.pgen.1002159openalex-snapshot
Transportin-SR Is Required for Proper Splicing of Resistance Genes and Plant Immunity
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Analyses of In Vivo Interaction and Mobility of Two Spliceosomal Proteins Using FRAP and BiFC
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Structure and Expression of a Plant U1 snRNP 70K Gene: Alternative Splicing of U1 snRNP 70K Pre-mRNAs Produces Two Different Transcripts
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The Plant U1 Small Nuclear Ribonucleoprotein Particle 70K Protein Interacts with Two Novel Serine/Arginine-Rich Proteins

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1016/b978-0-12-823967-4.00003-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.pbi.2018.05.005openalex-snapshot
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Discovering the World of Plant Nuclear Proteins
inferred← citeshttps://doi.org/10.1261/rna.060517.116openalex-snapshot
A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1371/journal.pone.0080509openalex-snapshot
Regulation of Abiotic Stress Signalling by Arabidopsis C-Terminal Domain Phosphatase-Like 1 Requires Interaction with a K-Homology Domain-Containing Protein
inferred← citeshttps://doi.org/10.1371/journal.pone.0139884openalex-snapshot
The Elucidation of the Interactome of 16 Arabidopsis bZIP Factors Reveals Three Independent Functional Networks
inferred← citeshttps://doi.org/10.1534/g3.118.200022openalex-snapshot
A Genetic Screen Identifies PRP18a, a Putative Second Step Splicing Factor Important for Alternative Splicing and a Normal Phenotype inArabidopsis thaliana
inferred← citeshttps://doi.org/10.1534/genetics.117.300149openalex-snapshot
A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a
inferred← citeshttps://doi.org/10.21248/gups.73855openalex-snapshot
The involvement of RS2Z proteins in tomato heat stress response and thermotolerance
inferred← citeshttps://doi.org/10.3389/fpls.2014.00378openalex-snapshot
Functional organization and dynamics of the cell nucleus
inferred← citeshttps://doi.org/10.3389/fpls.2016.01887openalex-snapshot
RXLR and CRN Effectors from the Sunflower Downy Mildew Pathogen Plasmopara halstedii Induce Hypersensitive-Like Responses in Resistant Sunflower Lines
inferred← citeshttps://doi.org/10.3389/fpls.2021.645689openalex-snapshot
Identification and Regulation of Tomato Serine/Arginine-Rich Proteins Under High Temperatures
inferred← citeshttps://doi.org/10.3389/fpls.2022.1032045openalex-snapshot
Landscape of biomolecular condensates in heat stress responses
inferred← citeshttps://doi.org/10.3389/fpls.2022.887232openalex-snapshot
Masks Start to Drop: Suppressor of MAX2 1-Like Proteins Reveal Their Many Faces
inferred← citeshttps://doi.org/10.3389/fpls.2022.911277openalex-snapshot
Relevance and Regulation of Alternative Splicing in Plant Heat Stress Response: Current Understanding and Future Directions
inferred← citeshttps://doi.org/10.3389/fpls.2022.984163openalex-snapshot
Nuclear dynamics: Formation of bodies and trafficking in plant nuclei
inferred← citeshttps://doi.org/10.3390/ijms22136731openalex-snapshot
Plant RNA Binding Proteins as Critical Modulators in Drought, High Salinity, Heat, and Cold Stress Responses: An Updated Overview
inferred← citeshttps://doi.org/10.3390/ijms242015205openalex-snapshot
Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs
inferred← citeshttps://doi.org/10.3390/ijms25105281openalex-snapshot
Microscopic Analysis of Nuclear Speckles in a Viviparous Reptile
inferred← citeshttps://doi.org/10.4161/nucl.29837openalex-snapshot
Nucleolus-tethering system (NoTS)
inferred← citeshttps://doi.org/10.4172/2329-8936.1000e103openalex-snapshot
Next Generation Sequencing for Better Understanding Alternative Splicing: Way Ahead for Model and Non-Model Plants
inferred← citeshttps://doi.org/10.47328/ufvbbt.2023.078openalex-snapshot
Domínios da proteína antiviral WWP1: formação de corpos nucleares e interação com proteínas pro-virais
inferred← citeshttps://doi.org/10.54612/a.7ueb4obng1openalex-snapshot
Stress & Granules : regulation of Cauliflower mosaic virus disease in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.70675/0a108ecazc435z4d3bza24dz983c27de2b63openalex-snapshot
Analyse fonctionnelle de cibles végétales d’effecteurs du parasitisme du nématode Meloidogyne incognita impliquées dans l’ontogénèse des cellules géantes
inferred← citeshttps://doi.org/10.70675/47d2b811z34e2z4f02z86f7z13a4b75b907fopenalex-snapshot
Analysis of the response of the nucleus of Arabidopsis thaliana to heat stress
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