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Survey of main tools for querying and analyzing TCGA Data

https://doi.org/10.1109/bibm.2018.8621270
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.gpb.2015.01.005openalex-snapshot
Databases and Web Tools for Cancer Genomics Study
inferredcites →https://doi.org/10.1016/j.ymeth.2016.09.002openalex-snapshot
Modeling and interoperability of heterogeneous genomic big data for integrative processing and querying
inferredcites →https://doi.org/10.1038/nbt1486openalex-snapshot
Next-generation DNA sequencing
inferredcites →https://doi.org/10.1093/bfgp/elx018openalex-snapshot
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
inferredcites →https://doi.org/10.1093/bib/bbv080openalex-snapshot
Public data and open source tools for multi-assay genomic investigation of disease
inferredcites →https://doi.org/10.1093/bib/bby023openalex-snapshot
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btv048openalex-snapshot
GenoMetric Query Language: a novel approach to large-scale genomic data management
inferredcites →https://doi.org/10.1093/bioinformatics/bty688openalex-snapshot
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data
inferredcites →https://doi.org/10.1093/database/baw160openalex-snapshot
FirebrowseR: an R client to the Broad Institute’s Firehose Pipeline
inferredcites →https://doi.org/10.1126/scisignal.2004088openalex-snapshot
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
inferredcites →https://doi.org/10.1158/0008-5472.can-17-0598openalex-snapshot
Developing Cancer Informatics Applications and Tools Using the NCI Genomic Data Commons API
inferredcites →https://doi.org/10.1158/0008-5472.can-17-0617openalex-snapshot
The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research
inferredcites →https://doi.org/10.1158/1538-7445.am2018-923openalex-snapshot
Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data
inferredcites →https://doi.org/10.1158/2159-8290.cd-12-0095openalex-snapshot
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
inferredcites →https://doi.org/10.1186/s12859-016-0917-9openalex-snapshot
Web-TCGA: an online platform for integrated analysis of molecular cancer data sets
inferredcites →https://doi.org/10.1186/s12859-016-1419-5openalex-snapshot
TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas
inferredcites →https://doi.org/10.1371/journal.pone.0106397openalex-snapshot
RTCGAToolbox: A New Tool for Exporting TCGA Firehose Data
inferredcites →https://doi.org/10.18632/oncotarget.21947openalex-snapshot
B-CAN: a resource sharing platform to improve the operation, visualization and integrated analysis of TCGA breast cancer data
inferredcites →https://doi.org/10.18632/oncotarget.6128openalex-snapshot
Oncogenomic portals for the visualization and analysis of genome-wide cancer data
inferredcites →https://doi.org/10.3389/fcell.2017.00083openalex-snapshot
A Comprehensive Infrastructure for Big Data in Cancer Research: Accelerating Cancer Research and Precision Medicine
inferredcites →https://doi.org/10.4414/smw.2015.14183openalex-snapshot
Data mining The Cancer Genome Atlas in the era of precision cancer medicine
inferredcites →https://doi.org/10.5114/wo.2014.47136openalex-snapshot
Review The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge
inferredcites →https://doi.org/10.5483/bmbrep.2016.49.11.145openalex-snapshot
Exploring cancer genomic data from the cancer genome atlas project

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.5055163openalex-extracted
Self-Normalizing Foundation Model for Enhanced Multi-Omics Data Analysis in Oncology
inferred← citeshttps://doi.org/10.1007/s41666-025-00212-wopenalex-snapshot
Multimodal Data Fusion for Whole-Slide Histopathology Image Classification
inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00197-4openalex-snapshot
Integrative Bioinformatics Tools for Cancer Research
inferred← citeshttps://doi.org/10.3390/app10186367openalex-snapshot
OpenGDC: Unifying, Modeling, Integrating Cancer Genomic Data and Clinical Metadata
inferred← citeshttps://doi.org/10.3390/ht9020008openalex-snapshot
DMETTM Genotyping: Tools for Biomarkers Discovery in the Era of Precision Medicine
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