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Parallelizing BLAST and SOM Algorithms with MapReduce-MPI Library
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1093/comjnl/bxp065openalex-snapshot
NIPSOM: Parallel Architecture and Implementation of a Growing SOM
inferredcites →https://doi.org/10.1109/csie.2009.950openalex-snapshot
The Pilot Way to Grid Resources Using glideinWMS
inferredcites →https://doi.org/10.1109/tpds.2006.112openalex-snapshot
ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis
inferredcites →https://doi.org/10.1145/1242531.1242542openalex-snapshot
Parallel genomic sequence-search on a massively parallel system
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.2390/biecoll-wsom2007-114openalex-snapshot
Emergence in Self Organizing Feature Maps
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4493754openalex-extracted
Dynamic Split Size: A Novel Approach for Bolstering Map Side Aggregation in Mapreduce and Future Ideas
inferred← citeshttps://doi.org/10.1002/cpe.3117openalex-snapshot
A performance/cost model for a CUDA drug discovery application on physical and public cloud infrastructures
inferred← citeshttps://doi.org/10.1007/978-1-4939-1905-5_5openalex-snapshot
GPU-Accelerated Cloud Computing for Data-Intensive Applications
inferred← citeshttps://doi.org/10.1007/978-3-030-59051-2_13openalex-snapshot
On Tensor Distances for Self Organizing Maps: Clustering Cognitive Tasks
inferred← citeshttps://doi.org/10.1007/978-3-319-21909-7_48openalex-snapshot
Development of a Distributed Parallel Algorithm of 3D Hydrodynamic Calculation of Oil Production on the Basis of MapReduce Hadoop and MPI Technologies
inferred← citeshttps://doi.org/10.1007/978-981-10-7242-0_14openalex-snapshot
Enhancing Parallel Self-organizing Map on Heterogeneous System Architecture
inferred← citeshttps://doi.org/10.1016/j.future.2013.07.003openalex-snapshot
A fast and resource-conscious MPI message queue mechanism for large-scale jobs
inferred← citeshttps://doi.org/10.1016/j.ins.2018.12.007openalex-snapshot
Spark-GHSOM: Growing Hierarchical Self-Organizing Map for large scale mixed attribute datasets
inferred← citeshttps://doi.org/10.1016/j.jbi.2015.01.008openalex-snapshot
HBLAST: Parallelised sequence similarity – A Hadoop MapReducable basic local alignment search tool
inferred← citeshttps://doi.org/10.1016/j.jpdc.2012.10.001openalex-snapshot
Accelerating text mining workloads in a MapReduce-based distributed GPU environment
inferred← citeshttps://doi.org/10.1016/j.neucom.2017.02.041openalex-snapshot
A massively parallel neural network approach to large-scale Euclidean traveling salesman problems
inferred← citeshttps://doi.org/10.1016/j.parco.2014.08.001openalex-snapshot
SDAFT: A novel scalable data access framework for parallel BLAST
inferred← citeshttps://doi.org/10.1093/bib/bby051openalex-snapshot
Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
inferred← citeshttps://doi.org/10.1093/gigascience/giaa127openalex-snapshot
GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets
inferred← citeshttps://doi.org/10.1109/access.2023.3281266openalex-snapshot
MapReduce for Graphs Processing: New Big Data Algorithm for 2-Edge Connected Components and Future Ideas
inferred← citeshttps://doi.org/10.1109/bibm.2015.7359900openalex-snapshot
Biomarker discovery, high performance and cloud computing: A comprehensive review
inferred← citeshttps://doi.org/10.1109/bibm.2016.7822643openalex-snapshot
The role of high performance, grid and cloud computing in high-throughput sequencing
inferred← citeshttps://doi.org/10.1109/bigdatacongress.2019.00020openalex-snapshot
Big Data Analytics and Predictive Modeling Approaches for the Energy Sector
inferred← citeshttps://doi.org/10.1109/cesys.2017.8321329openalex-snapshot
Hadoop techniques for concise investigation of big data in multi-format data sets
inferred← citeshttps://doi.org/10.1109/cloudcom.2011.93openalex-snapshot
Leveraging on High-Performance Computing and Cloud Technologies in Digital Libraries: A Case Study
inferred← citeshttps://doi.org/10.1109/ipdps.2017.31openalex-snapshot
Mimir: Memory-Efficient and Scalable MapReduce for Large Supercomputing Systems
inferred← citeshttps://doi.org/10.1109/ipdpsw.2014.192openalex-snapshot
SOM Clustering Using Spark-MapReduce
inferred← citeshttps://doi.org/10.1109/ipdpsw.2016.6openalex-snapshot
SparkScore: Leveraging Apache Spark for Distributed Genomic Inference
inferred← citeshttps://doi.org/10.1109/padsw.2018.8644595openalex-snapshot
On the Power of Combiner Optimizations in MapReduce Over MPI Workflows
inferred← citeshttps://doi.org/10.1109/tcc.2017.2754484openalex-snapshot
ODDS: Optimizing Data-Locality Access for Scientific Data Analysis
inferred← citeshttps://doi.org/10.1109/tpds.2019.2932066openalex-snapshot
Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems
inferred← citeshttps://doi.org/10.1109/trustcom.2014.93openalex-snapshot
The Evaluation of Emulab as an Environment for Bio-Informatics Research
inferred← citeshttps://doi.org/10.1145/2401603.2401624openalex-snapshot
A framework for readapting and running bioinformatics applications in the cloud
inferred← citeshttps://doi.org/10.1145/2807591.2807617openalex-snapshot
Fault tolerant MapReduce-MPI for HPC clusters
inferred← citeshttps://doi.org/10.1371/journal.pone.0080503openalex-snapshot
Knowledge and Theme Discovery across Very Large Biological Data Sets Using Distributed Queries: A Prototype Combining Unstructured and Structured Data
inferred← citeshttps://doi.org/10.23860/diss-rivera-morales-omar-2022openalex-snapshot
PARALLELIZATION OF VECTORIZED SELF-ORGANIZING MAPS IN HARDWARE ACCELERATOR ARCHITECTURES
inferred← citeshttps://doi.org/10.29007/qm7hopenalex-snapshot
HPC-BLAST: Distributed BLAST for Modern HPC Clusters.
inferred← citeshttps://doi.org/10.36227/techrxiv.171778162.24397354/v1openalex-snapshot
Dynamic Split Size: A Novel Approach for Bolstering Map Side Aggregation in MapReduce and Future Ideas
inferred← citeshttps://doi.org/10.48550/arxiv.1905.09598openalex-snapshot
CUDA-Self-Organizing feature map based visual sentiment analysis of bank customer complaints for Analytical CRM
inferred← citeshttps://doi.org/10.70675/93dbc938za5f8z403cza61az477be37474cdopenalex-snapshot
Massively distributed learning in a Big Data environment
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