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Segmenting Root Systems in X-Ray Computed Tomography Images Using Level Sets

https://doi.org/10.1109/wacv.2018.00070

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A General Algorithm for Computing Distance Transforms in Linear Time

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Visual tracking for the recovery of multiple interacting plant root systems from X-ray $$\upmu $$ μ CT images

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Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

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Next generation shovelomics: set up a tent and REST

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Biochar amendment increases maize root surface areas and branching: a shovelomics study in Zambia

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A Review of Statistical Approaches to Level Set Segmentation: Integrating Color, Texture, Motion and Shape

inferredcites →https://doi.org/10.1016/j.bone.2010.08.023openalex-snapshot

BoneJ: Free and extensible bone image analysis in ImageJ

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Left ventricle segmentation via two-layer level sets with circular shape constraint

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3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture

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Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform

inferredcites →https://doi.org/10.1104/pp.111.186221openalex-snapshot

RooTrak: Automated Recovery of Three-Dimensional Plant Root Architecture in Soil from X-Ray Microcomputed Tomography Images Using Visual Tracking

inferredcites →https://doi.org/10.1109/iccv.2011.6126475openalex-snapshot

Detailed reconstruction of 3D plant root shape

inferredcites →https://doi.org/10.1109/icip.2001.958071openalex-snapshot

Variable-conductance, level-set curvature for image denoising

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Skull Segmentation and Reconstruction From Newborn CT Images Using Coupled Level Sets

inferredcites →https://doi.org/10.1109/motion.2002.1182214openalex-snapshot

A variational framework for active and adaptative segmentation of vector valued images

inferredcites →https://doi.org/10.1109/tip.2013.2282899openalex-snapshot

A Novel Approach for Lung Nodules Segmentation in Chest CT Using Level Sets

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A streaming narrow-band algorithm: interactive computation and visualization of level sets

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Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants

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Segmentation of cortical bone using fast level sets

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Level-set based vessel segmentation accelerated with periodic monotonic speed function

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Fast level-set based image segmentation using coherent propagation

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Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography

inferredcites →https://doi.org/10.1186/s13007-015-0060-zopenalex-snapshot

Direct comparison of MRI and X-ray CT technologies for 3D imaging of root systems in soil: potential and challenges for root trait quantification

inferredcites →https://doi.org/10.1371/journal.pone.0127657openalex-snapshot

DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots

inferredcites →https://doi.org/10.1371/journal.pone.0176433openalex-snapshot

An image processing and analysis tool for identifying and analysing complex plant root systems in 3D soil using non-destructive analysis: Root1

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MeshLab: an Open-Source Mesh Processing Tool

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.3333709zenodo-depositor-declared

Code and Data from: Segmenting Root Systems in X-Ray Computed Tomography Images Using Level Sets

inferred← citeshttps://doi.org/10.1002/aps3.11371openalex-snapshot

Plants meet machines: Prospects in machine learning for plant biology

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Super resolution for root imaging

inferred← citeshttps://doi.org/10.1007/s11104-019-04053-6openalex-snapshot

A shape-based method for automatic and rapid segmentation of roots in soil from X-ray computed tomography images: Rootine

inferred← citeshttps://doi.org/10.1016/j.compbiomed.2021.105086openalex-snapshot

Texture appearance model, a new model-based segmentation paradigm, application on the segmentation of lung nodule in the CT scan of the chest

inferred← citeshttps://doi.org/10.1016/j.geoderma.2021.115405openalex-snapshot

Use of X-ray tomography for examining root architecture in soils

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Mechanisms of root reinforcement in soils: an experimental methodology using four-dimensional X-ray computed tomography and digital volume correlation

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Visualization Methods of 3D Plant Models: A Systematic Mapping Study

inferred← citeshttps://doi.org/10.1186/s13007-021-00735-4openalex-snapshot

An improved method for the segmentation of roots from X-ray computed tomography 3D images: Rootine v.2

inferred← citeshttps://doi.org/10.25165/j.ijabe.20201303.5268openalex-snapshot

Non-destructive 3D geometric modeling of maize root-stubble in-situ via X-ray computed tomography

inferred← citeshttps://doi.org/10.32603/1993-8985-2022-25-3-96-117openalex-snapshot

Application of a Texture Appearance Model for Segmentation of Lung Nodules on Computed Tomography of the Chest

inferred← citeshttps://doi.org/10.3390/agronomy15040798openalex-snapshot

Root Phenotyping: A Contribution to Understanding Drought Stress Resilience in Grain Legumes

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