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inbreedR: an R package for the analysis of inbreeding based on genetic markers

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf01245622openalex-snapshot
Linkage disequilibrium in finite populations
inferredcites →https://doi.org/10.1007/s10592-007-9309-zopenalex-snapshot
Heterozygosity-fitness correlations within inbreeding classes: local or genome-wide effects?
inferredcites →https://doi.org/10.1016/0040-5809(77)90007-7openalex-snapshot
The distribution of the proportion of the genome which is homozygous by descent in inbred individuals
inferredcites →https://doi.org/10.1016/j.tree.2004.09.010openalex-snapshot
Measuring inbreeding depression in the wild: the old ways are the best
inferredcites →https://doi.org/10.1017/s0016672300013446openalex-snapshot
Mixed self and random mating at two loci
inferredcites →https://doi.org/10.1017/s0016672310000480openalex-snapshot
Variation in actual relationship as a consequence of Mendelian sampling and linkage
inferredcites →https://doi.org/10.1038/hdy.2011.30openalex-snapshot
A new likelihood estimator and its comparison with moment estimators of individual genome-wide diversity
inferredcites →https://doi.org/10.1038/hdy.2013.99openalex-snapshot
Estimating genome-wide heterozygosity: effects of demographic history and marker type
inferredcites →https://doi.org/10.1038/hdy.2015.17openalex-snapshot
Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees
inferredcites →https://doi.org/10.1038/nrg2664openalex-snapshot
The genetics of inbreeding depression
inferredcites →https://doi.org/10.1038/sj.hdy.6800485openalex-snapshot
Understanding the relationship between the inbreeding coefficient and multilocus heterozygosity: theoretical expectations and empirical data
inferredcites →https://doi.org/10.1038/sj.hdy.6883930openalex-snapshot
Heterozygosity–fitness correlations: new perspectives on old problems
inferredcites →https://doi.org/10.1046/j.1365-294x.2002.01644.xopenalex-snapshot
On the correlation between heterozygosity and fitness in natural populations
inferredcites →https://doi.org/10.1073/pnas.1318945111openalex-snapshot
High-throughput sequencing reveals inbreeding depression in a natural population
inferredcites →https://doi.org/10.1073/pnas.1506076112openalex-snapshot
Chemical fingerprints encode mother–offspring similarity, colony membership, relatedness, and genetic quality in fur seals
inferredcites →https://doi.org/10.1073/pnas.1518046113openalex-snapshot
Inbreeding depression across the lifespan in a wild mammal population
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/genetics/139.4.1719openalex-snapshot
Alternative models for allozyme-associated heterosis in the marine bivalve Spisula ovalis.
inferredcites →https://doi.org/10.1093/genetics/155.4.1981openalex-snapshot
An Inbreeding Model of Associative Overdominance During a Population Bottleneck
inferredcites →https://doi.org/10.1093/genetics/159.4.1845openalex-snapshot
Heterosis, Marker Mutational Processes and Population Inbreeding History
inferredcites →https://doi.org/10.1093/genetics/59.4.543openalex-snapshot
THE STABILITY OF LINKED SYSTEMS OF LOCI WITH A SMALL POPULATION SIZE
inferredcites →https://doi.org/10.1098/rspb.2007.1531openalex-snapshot
Wild pedigrees: the way forward
inferredcites →https://doi.org/10.1111/1755-0998.12193openalex-snapshot
Evaluating the role of inbreeding depression in heterozygosity‐fitness correlations: how useful are tests for identity disequilibrium?
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00309.xopenalex-snapshot
MICROSATELLITE MEASURES OF INBREEDING: A META-ANALYSIS
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02318.xopenalex-snapshot
Does heterozygosity estimate inbreeding in real populations?
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03330.xopenalex-snapshot
Reliable selfing rate estimates from imperfect population genetic data
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04247.xopenalex-snapshot
A quantitative review of heterozygosity–fitness correlations in animal populations
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05593.xopenalex-snapshot
Heterozygosity–fitness correlations in zebra finches: microsatellite markers can be better than their reputation
inferredcites →https://doi.org/10.1111/j.1558-5646.1999.tb04538.xopenalex-snapshot
PARASITE-MEDIATED SELECTION AGAINST INBRED SOAY SHEEP IN A FREE-LIVING ISLAND POPULATON
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.00966.xopenalex-snapshot
HETEROZYGOSITY-FITNESS CORRELATIONS: A TIME FOR REAPPRAISAL
inferredcites →https://doi.org/10.1146/annurev.es.18.110187.001321openalex-snapshot
INBREEDING DEPRESSION AND ITS EVOLUTIONARY CONSEQUENCES
inferredcites →https://doi.org/10.1186/s12711-014-0071-7openalex-snapshot
Identification of genomic regions associated with inbreeding depression in Holstein and Jersey dairy cattle
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
inferredcites →https://doi.org/10.1534/genetics.111.130922openalex-snapshot
Quantification of Inbreeding Due to Distant Ancestors and Its Detection Using Dense Single Nucleotide Polymorphism Data
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4767068openalex-extracted
Going with the Flow: Understanding Population Dynamics of Malabar Red Snapper (Lutjanus Malabaricus) in the Indo-Pacific
inferred← citeshttps://doi.org/10.1002/1438-390x.12093openalex-snapshot
Genetic consequences of habitat fragmentation in a perennial plant Trillium camschatcense are subjected to its slow‐paced life history
inferred← citeshttps://doi.org/10.1002/ajb2.16216openalex-snapshot
Genomic analysis unveils reduced genetic variability but increased proportion of heterozygotic genotypes of the intensively managed mezcal agave, Agave angustifolia
inferred← citeshttps://doi.org/10.1002/ajb2.70062openalex-snapshot
The interplay among space, environment, and gene flow drives genetic differentiation in endemic Baja California Agave sobria subspecies
inferred← citeshttps://doi.org/10.1002/ajhb.23702openalex-snapshot
Genetic structure and population connection of two Bouyei populations in northern Vietnam based on short tandem repeat analysis
inferred← citeshttps://doi.org/10.1002/ece3.11079openalex-snapshot
Phenotypic differentiation despite gene flow: Beak morphology, bite performance, and population genetics of Loggerhead Shrikes (Lanius ludovicianus)
inferred← citeshttps://doi.org/10.1002/ece3.2290openalex-snapshot
Born blonde: a recessive loss‐of‐function mutation in the melanocortin 1 receptor is associated with cream coat coloration in A ntarctic fur seals
inferred← citeshttps://doi.org/10.1002/ece3.2781openalex-snapshot
Influences of multilocus heterozygosity on size during early life
inferred← citeshttps://doi.org/10.1002/ece3.4132openalex-snapshot
Age‐ and quality‐dependent DNA methylation correlate with melanin‐based coloration in a wild bird
inferred← citeshttps://doi.org/10.1002/ece3.4350openalex-snapshot
Genome‐wide SNP analysis unveils genetic structure and phylogeographic history of snow sheep ( Ovis nivicola ) populations inhabiting the Verkhoyansk Mountains and Momsky Ridge (northeastern Siberia)
inferred← citeshttps://doi.org/10.1002/ece3.4905openalex-snapshot
Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation
inferred← citeshttps://doi.org/10.1002/ece3.5268openalex-snapshot
From microsatellites to single nucleotide polymorphisms for the genetic monitoring of a critically endangered sturgeon
inferred← citeshttps://doi.org/10.1002/ece3.5317openalex-snapshot
Heterozygosity at neutral and immune loci is not associated with neonatal mortality due to microbial infection in Antarctic fur seals
inferred← citeshttps://doi.org/10.1002/ece3.5367openalex-snapshot
Parental genetic similarity and offspring performance in blue tits in relation to brood size manipulation
inferred← citeshttps://doi.org/10.1002/ece3.6165openalex-snapshot
Insights into the neutral and adaptive processes shaping the spatial distribution of genomic variation in the economically important Moroccan locust (Dociostaurus maroccanus)
inferred← citeshttps://doi.org/10.1002/ece3.6670openalex-snapshot
Comparative assessment of range‐wide patterns of genetic diversity and structure with SNPs and microsatellites: A case study with Iberian amphibians
inferred← citeshttps://doi.org/10.1002/ece3.70027openalex-snapshot
Population genomics and distribution modeling revealed the history and suggested a possible future of the endemic Agave aurea (Asparagaceae) complex in the Baja California Peninsula
inferred← citeshttps://doi.org/10.1002/ece3.71392openalex-snapshot
Rapid Colonisation of Synanthropic Stone Martens in a Highly Urbanised Region: Insights From Temporal and Spatial Analysis
inferred← citeshttps://doi.org/10.1002/ece3.72920openalex-snapshot
Genomic Evidence of Low Contemporary Effective Population Size and Southern Genetic Reservoirs in an Island Endemic Epiphytic Orchid of Taiwan
inferred← citeshttps://doi.org/10.1002/ece3.72923openalex-snapshot
Host Genetics and the Skin Microbiome Independently Predict Parasite Resistance
inferred← citeshttps://doi.org/10.1002/ece3.74182openalex-snapshot
Unraveling the Evolutionary History of Snow Sheep ( Ovis nivicola ): Genome‐Wide Single Nucleotide Polymorphism Analysis Reveals Genetic Diversity and Clarifies Taxonomy
inferred← citeshttps://doi.org/10.1002/ppp3.10532openalex-snapshot
Evolution history and the importance of genomic diversity facing climate change. The case of Agave marmorata Roezl., a microendemic agave used for mezcal production
inferred← citeshttps://doi.org/10.1007/13836_2019_64openalex-snapshot
Genomics for Genetic Rescue
inferred← citeshttps://doi.org/10.1007/978-981-16-6005-4_5openalex-snapshot
Genetic Consequences of Fragmentation in Tropical Forests: Novel Approaches to Assess and Monitor Critically Endangered Species
inferred← citeshttps://doi.org/10.1007/s00122-023-04360-8openalex-snapshot
Genetic analysis of global faba bean diversity, agronomic traits and selection signatures
inferred← citeshttps://doi.org/10.1007/s10336-017-1474-3openalex-snapshot
Viability selection creates negative heterozygosity–fitness correlations in female Black Grouse Lyrurus tetrix
inferred← citeshttps://doi.org/10.1007/s10336-020-01753-0openalex-snapshot
Heterozygosity and fitness in a threatened songbird: blood parasite infection is explained by single-locus but not genome-wide effects
inferred← citeshttps://doi.org/10.1007/s10592-020-01272-8openalex-snapshot
Fitness costs associated with ancestry to isolated populations of an endangered species
inferred← citeshttps://doi.org/10.1007/s10592-020-01278-2openalex-snapshot
Investigating inbreeding in a free-ranging, captive population of an Australian marsupial
inferred← citeshttps://doi.org/10.1007/s10592-022-01499-7openalex-snapshot
Conservation genomics reveals fine-scale population structuring and recent declines in the Critically Endangered Australian Kuranda Treefrog
inferred← citeshttps://doi.org/10.1007/s10592-024-01610-0openalex-snapshot
Genomic and common garden data reveal significant genetic differentiation in the endangered San Fernando Valley spineflower Chorizanthe parryi var. fernandina
inferred← citeshttps://doi.org/10.1007/s10592-025-01677-3openalex-snapshot
Increased heterozygosity and body condition result from admixed translocation of the threatened Mogollon Narrow-headed Gartersnake (Thamnophis rufipunctatus)
inferred← citeshttps://doi.org/10.1007/s10592-025-01686-2openalex-snapshot
Genomic repercussions of landscape modification on three lizard species
inferred← citeshttps://doi.org/10.1007/s10592-025-01700-7openalex-snapshot
Conservation genetics of Mahogany Gliders and their complex evolutionary relationship with Squirrel Gliders
inferred← citeshttps://doi.org/10.1007/s10592-025-01728-9openalex-snapshot
Conservation genomics of an isolated southern greater glider (Petauroides volans) population at Seven Mile Beach National Park, New South Wales, Australia
inferred← citeshttps://doi.org/10.1007/s10592-025-01737-8openalex-snapshot
Population genetics of the endangered narrowly endemic Island Marble butterfly (Euchloe ausonides insulanus)
inferred← citeshttps://doi.org/10.1007/s10592-025-01748-5openalex-snapshot
Genomic data suggest no inbreeding and isolation by environment in an endangered bird
inferred← citeshttps://doi.org/10.1007/s10592-026-01813-7openalex-snapshot
Conservation genetics of the Brolga (Antigone rubicunda) across eastern Australia reveals genetic structure and potential loss of adaptive capacity
inferred← citeshttps://doi.org/10.1007/s10682-017-9911-6openalex-snapshot
Heterozygosity–fitness correlations in blue tit nestlings (Cyanistis caeruleus) under contrasting rearing conditions
inferred← citeshttps://doi.org/10.1007/s10811-019-01853-2openalex-snapshot
Assessment of the genetic relationship between the recently established benthic population and the adjacent floating populations of Sargassum horneri (Phaeophyceae) in Dalian of China by newly developed trinucleotide microsatellite markers
inferred← citeshttps://doi.org/10.1007/s10811-023-02977-2openalex-snapshot
A newly discovered subtidal population of Undaria pinnatifida was determined not to be founded recently by the zoospores discharged from a nearby hatchery
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2020.735171openalex-snapshot
Pipette and paper: Combining molecular and genealogical methods to assess a Nile tilapia (Oreochromis niloticus) breeding program
inferred← citeshttps://doi.org/10.1016/j.biocon.2023.110430openalex-snapshot
Genetic rescue attempt in a small, inbred population of a wild endangered passerine
inferred← citeshttps://doi.org/10.1016/j.biocontrol.2020.104462openalex-snapshot
Post-release genetic assessment of two congeneric weed biological control agents
inferred← citeshttps://doi.org/10.1016/j.ijpara.2026.104923openalex-snapshot
Clonal amplification and weak genetic structuring in the rumen fluke Calicophoron daubneyi at a regional scale in the French Pyrenees
inferred← citeshttps://doi.org/10.1016/j.livsci.2018.11.006openalex-snapshot
Comparison of diversity parameters from SNP, microsatellites and pedigree records in the Lidia cattle breed
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.161705openalex-snapshot
Fine scale genetics reveals the subtle negative effects of roads on an endangered bat
inferred← citeshttps://doi.org/10.1016/j.tree.2022.09.006openalex-snapshot
Molecular ecology meets systematic conservation planning
inferred← citeshttps://doi.org/10.1038/s41437-019-0182-6openalex-snapshot
Structure of multilocus genetic diversity in predominantly selfing populations
inferred← citeshttps://doi.org/10.1038/s41437-024-00672-7openalex-snapshot
Population genomics of the white-beaked dolphin (Lagenorhynchus albirostris): Implications for conservation amid climate-driven range shifts
inferred← citeshttps://doi.org/10.1038/s41437-026-00859-0openalex-snapshot
It is hard to be small: Inbreeding depression on male breeding success depends on body size in a threatened songbird
inferred← citeshttps://doi.org/10.1038/s41559-024-02533-2openalex-snapshot
Genomic and fitness consequences of a near-extinction event in the northern elephant seal
inferred← citeshttps://doi.org/10.1038/s41598-017-13476-zopenalex-snapshot
Host heterozygosity and genotype rarity affect viral dynamics in an avian subspecies complex
inferred← citeshttps://doi.org/10.1038/s41598-019-43939-4openalex-snapshot
RAD sequencing sheds new light on the genetic structure and local adaptation of European scallops and resolves their demographic histories
inferred← citeshttps://doi.org/10.1038/s41598-020-61299-2openalex-snapshot
Genetic epidemiology of the Alpine ibex reservoir of persistent and virulent brucellosis outbreak
inferred← citeshttps://doi.org/10.1038/s41598-022-14468-4openalex-snapshot
The genetic consequences of captive breeding, environmental change and human exploitation in the endangered peninsular pronghorn
inferred← citeshttps://doi.org/10.1038/s41598-022-21658-7openalex-snapshot
Intronic primers reveal unexpectedly high major histocompatibility complex diversity in Antarctic fur seals
inferred← citeshttps://doi.org/10.1038/s41598-024-62290-xopenalex-snapshot
Little evidence of inbreeding depression for birth mass, survival and growth in Antarctic fur seal pups
inferred← citeshttps://doi.org/10.1038/s41598-024-68923-5openalex-snapshot
Sea surface temperature and current-related parameters affecting local adaptation of scalloped spiny lobster population in Indonesia’s archipelagic system
inferred← citeshttps://doi.org/10.1038/s41598-024-77750-7openalex-snapshot
Differences between mates at the TLR1Lb locus are associated with lower reproductive success in a long-lived seabird
inferred← citeshttps://doi.org/10.1038/s41598-025-25641-wopenalex-snapshot
Genomic analyses reveal trans-generational haul out site fidelity in leopard seals
inferred← citeshttps://doi.org/10.1071/wr22098openalex-snapshot
Kinship analysis reveals low dispersal in a hog deer (Axis porcinus) population in Wilsons Promontory National Park, Australia
inferred← citeshttps://doi.org/10.1073/pnas.1909599117openalex-snapshot
Consistent scaling of inbreeding depression in space and time in a house sparrow metapopulation
inferred← citeshttps://doi.org/10.1080/01584197.2022.2063746openalex-snapshot
Divided by the range: evidence for geographic isolation of the highly mobile Emu (Dromaius novaehollandiae)
inferred← citeshttps://doi.org/10.1080/09670262.2018.1532116openalex-snapshot
Genetic analysis of a recently establishedUndaria pinnatifida(Laminariales: Alariaceae) population in the northern Wadden Sea reveals close proximity between drifting thalli and the attached population
inferred← citeshttps://doi.org/10.1086/714079openalex-snapshot
Demographic History, Not Mating System, Explains Signatures of Inbreeding and Inbreeding Depression in a Large Outbred Population
inferred← citeshttps://doi.org/10.1086/715637openalex-snapshot
Genomic Insights into the Historical Population Dynamics and Spatial Differentiation of an Endangered Island Endemic Palm,Brahea edulis
inferred← citeshttps://doi.org/10.1086/732807openalex-snapshot
Testing the Mating System Model of Parasite Complex Life Cycle Evolution Reveals Demographically Driven Mixed Mating
inferred← citeshttps://doi.org/10.1093/aob/mcag132openalex-snapshot
Clonality, management and geography shape genetic structure in a perennial species with restricted distribution
inferred← citeshttps://doi.org/10.1093/beheco/araf144openalex-snapshot
Banded mongooses discriminate relatedness and MHC diversity in unfamiliar conspecifics
inferred← citeshttps://doi.org/10.1093/beheco/arz215openalex-snapshot
Female need for paternal care shapes variation in extra-pair paternity in a cooperative breeder
inferred← citeshttps://doi.org/10.1093/botlinnean/boag041openalex-snapshot
Range-wide genomic differentiation is driven by geography and climate in Agave cerulata Trel. (Asparagaceae), an endemic Agav e complex of the Baja California Peninsula
inferred← citeshttps://doi.org/10.1093/evolut/qpad047openalex-snapshot
Failure to purge: population and individual inbreeding effects on fitness across generations of wild Impatiens capensis
inferred← citeshttps://doi.org/10.1093/evolut/qpaf016openalex-snapshot
Comparing the hermaphroditic mating system of a parasitic flatworm between populations with an ancestral, three-host life cycle and a derived, facultative precocious life cycle
inferred← citeshttps://doi.org/10.1093/g3journal/jkab307openalex-snapshot
Genomic signatures of inbreeding in a critically endangered parrot, the kākāpō
inferred← citeshttps://doi.org/10.1093/g3journal/jkad015openalex-snapshot
Protein coding variation in the J:ARC and J:DO outbred laboratory mouse stocks provides a molecular basis for distinct research applications
inferred← citeshttps://doi.org/10.1093/gbe/evab214openalex-snapshot
Population Structure, Genetic Connectivity, and Signatures of Local Adaptation of the Giant Black Tiger Shrimp (Penaeus monodon) throughout the Indo-Pacific Region
inferred← citeshttps://doi.org/10.1093/gbe/evag166openalex-snapshot
Genome-Wide Analysis of an Endangered Axolotl Endemic to Mexico Reveals Genomic Variation Associated with Body Condition, Environment, and Infection by a Pathogenic Fungus
inferred← citeshttps://doi.org/10.1093/gbe/evag224openalex-snapshot
High levels of mitotic gene conversion are needed to effectively purge deleterious mutations in asexual organisms
inferred← citeshttps://doi.org/10.1093/genetics/iyac083openalex-snapshot
Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus
inferred← citeshttps://doi.org/10.1093/icesjms/fsac130openalex-snapshot
Genome-wide SNPs reveal fine-scale genetic structure in ornate spiny lobster Panulirus ornatus throughout Indo-West Pacific Ocean
inferred← citeshttps://doi.org/10.1093/icesjms/fsad050openalex-snapshot
Stranding collections indicate broad-scale connectivity across the range of a pelagic marine predator, the Atlantic white-sided dolphin (Lagenorhynchus acutus)
inferred← citeshttps://doi.org/10.1093/jhered/esaa056openalex-snapshot
Heterozygosity-Fitness Correlations in a Continental Island Population of Thorn-Tailed Rayadito
inferred← citeshttps://doi.org/10.1093/jhered/esab027openalex-snapshot
Impacts of Fire on Butterfly Genetic Diversity and Connectivity
inferred← citeshttps://doi.org/10.1093/jhered/esac014openalex-snapshot
Population Genomics of New Zealand Pouched Lamprey (kanakana; piharau;Geotria australis)
inferred← citeshttps://doi.org/10.1093/jhered/esad030openalex-snapshot
No evidence of inbreeding depression despite a historical severe bottleneck in the endangered Bermuda petrel (Pterodroma cahow)
inferred← citeshttps://doi.org/10.1093/jhered/esae006openalex-snapshot
Genomic data revealed inbreeding despite a geographically connected stable effective population size since the Holocene in the protected Formosan Long-Arm Scarab beetle, Cheirotonus formosanus
inferred← citeshttps://doi.org/10.1093/jhered/esae029openalex-snapshot
Genomic insights into the critically endangered King Island scrubtit
inferred← citeshttps://doi.org/10.1093/jhered/esaf106openalex-snapshot
Effective population size associated with sky-island distribution in the summit rat, Rattus baluensis , a mountain Bornean endemic
inferred← citeshttps://doi.org/10.1093/jhered/esz060openalex-snapshot
Heterozygosity–Fitness Correlations Reveal Inbreeding Depression in Neonatal Body Size in a Critically Endangered Rock Iguana
inferred← citeshttps://doi.org/10.1093/jmammal/gyaa043openalex-snapshot
Genetic signature of disease epizootic and reintroduction history in an endangered carnivore
inferred← citeshttps://doi.org/10.1093/ornithology/ukae045openalex-snapshot
Agonistic song rate positively correlates with male breeding success and avian malaria infection in Acrocephalus paludicola (Aquatic Warbler), a promiscuous songbird with female-only parental care
inferred← citeshttps://doi.org/10.1093/pcp/pcae110openalex-snapshot
Genetic Isolation among Four Lineages of Silene nutans
inferred← citeshttps://doi.org/10.1098/rsos.171798openalex-snapshot
Kin discrimination via odour in the cooperatively breeding banded mongoose
inferred← citeshttps://doi.org/10.1098/rsos.200419openalex-snapshot
Genetic analysis ofBoletus edulissuggests that intra-specific competition may reduce local genetic diversity as a woodland ages
inferred← citeshttps://doi.org/10.1098/rsos.240490openalex-snapshot
Effects of inbreeding on reproductive success in endangered North Atlantic right whales
inferred← citeshttps://doi.org/10.1098/rspb.2016.2763openalex-snapshot
Pedigree-based inbreeding coefficient explains more variation in fitness than heterozygosity at 160 microsatellites in a wild bird population
inferred← citeshttps://doi.org/10.1098/rspb.2020.0195openalex-snapshot
Sex-specific impact of inbreeding on pathogen load in the striped dolphin
inferred← citeshttps://doi.org/10.1098/rspb.2023.2519openalex-snapshot
No evidence for a role of MHC class II genotype in the chemical encoding of heterozygosity and relatedness in Antarctic fur seals
inferred← citeshttps://doi.org/10.1101/2020.08.20.259036openalex-snapshot
Effects of fine-scale population structure on the distribution of heterozygosity in a long-term study of Antirrhinum majus
inferred← citeshttps://doi.org/10.1101/2021.04.06.438651openalex-snapshot
Captive-breeding and catch-and-release’s effects on the reproductive success of Atlantic salmon ( Salmo salar L.)
inferred← citeshttps://doi.org/10.1101/2022.03.01.482476openalex-snapshot
Spatiotemporal changes in genetic diversity and structure of a recent fish invasion in eastern North America
inferred← citeshttps://doi.org/10.1101/2023.06.19.545572openalex-snapshot
Comparative population genomics of manta rays has global implications for management
inferred← citeshttps://doi.org/10.1101/2023.07.19.549682openalex-snapshot
Geographic isolation enables recurrent pollinator shifts despite hybridisation in the Cape’s hyperdiverse heathers
inferred← citeshttps://doi.org/10.1101/2023.11.17.567615openalex-snapshot
Genome-wide assessment of runs of homozygosity in Sahiwal cattle of Pakistan
inferred← citeshttps://doi.org/10.1101/2024.01.12.575355openalex-snapshot
Little evidence for inbreeding depression for birth mass, survival and growth in Antarctic fur seal pups
inferred← citeshttps://doi.org/10.1101/2024.04.21.590470openalex-snapshot
It is hard to be small: Inbreeding depression depends on the body size in a threatened songbird
inferred← citeshttps://doi.org/10.1101/2025.09.09.675276openalex-snapshot
Eco-genomic analysis uncovers precision-conservation targets for the western Pacific’s southernmost salmonid
inferred← citeshttps://doi.org/10.1101/210005openalex-snapshot
Partial selfing eliminates inbreeding depression while maintaining genetic diversity
inferred← citeshttps://doi.org/10.1111/1365-2656.12878openalex-snapshot
Inbreeding intensifies sex‐ and age‐dependent disease in a wild mammal
inferred← citeshttps://doi.org/10.1111/1365-2656.13071openalex-snapshot
Seeing‐good‐gene‐based mate choice: From genes to behavioural preferences
inferred← citeshttps://doi.org/10.1111/1365-2656.13979openalex-snapshot
Multi‐locus homozygosity promotes actuarial senescence in a wild mammal
inferred← citeshttps://doi.org/10.1111/1365-2664.13718openalex-snapshot
Conservation planning for adaptive and neutral evolutionary processes
inferred← citeshttps://doi.org/10.1111/1755-0998.12997openalex-snapshot
Too much of a good thing? Finding the most informative genetic data set to answer conservation questions
inferred← citeshttps://doi.org/10.1111/acv.12413openalex-snapshot
Inbreeding in an endangered killer whale population
inferred← citeshttps://doi.org/10.1111/acv.12787openalex-snapshot
Urban restoration of common species: population genetics of reintroduced native bush rats Rattus fuscipes in Sydney, Australia
inferred← citeshttps://doi.org/10.1111/cobi.14154openalex-snapshot
Genetic erosion in an endangered desert fish during a megadrought despite long‐term supportive breeding
inferred← citeshttps://doi.org/10.1111/csp2.70155openalex-snapshot
Genetic and environmental factors associated with survival of a rare songbird in a fragmented urban landscape
inferred← citeshttps://doi.org/10.1111/ddi.70273openalex-snapshot
Repurposing Legacy Reduced‐Representation Genomic Datasets for Conservation Biogeography: Lessons From Hercules Beetles Across Neotropical Ecoregions
inferred← citeshttps://doi.org/10.1111/ede.12248openalex-snapshot
Producing offspring in Armadillidium vulgare: Effects of genetic diversity and inbreeding
inferred← citeshttps://doi.org/10.1111/ele.13578openalex-snapshot
Inbreeding depresses altruism in a cooperative society
inferred← citeshttps://doi.org/10.1111/eva.12414openalex-snapshot
Genomics advances the study of inbreeding depression in the wild
inferred← citeshttps://doi.org/10.1111/eva.12647openalex-snapshot
Population genomics of the introduced and cultivated Pacific kelp Undaria pinnatifida: Marinas—not farms—drive regional connectivity and establishment in natural rocky reefs
inferred← citeshttps://doi.org/10.1111/eva.12736openalex-snapshot
Detailed insights into pan‐European population structure and inbreeding in wild and hatchery Pacific oysters ( Crassostrea gigas ) revealed by genome‐wide SNP data
inferred← citeshttps://doi.org/10.1111/eva.12755openalex-snapshot
Into the weeds: Matching importation history to genetic consequences and pathways in two widely used biological control agents
inferred← citeshttps://doi.org/10.1111/eva.12768openalex-snapshot
Does gene flow aggravate or alleviate maladaptation to environmental stress in small populations?
inferred← citeshttps://doi.org/10.1111/eva.12837openalex-snapshot
A genome‐wide investigation of the worldwide invader Sargassum muticum shows high success albeit (almost) no genetic diversity
inferred← citeshttps://doi.org/10.1111/eva.12974openalex-snapshot
Genome‐wide insights into introgression and its consequences for genome‐wide heterozygosity in the Mytilus species complex across Europe
inferred← citeshttps://doi.org/10.1111/eva.12981openalex-snapshot
Deciphering genetic mate choice: Not so simple in group‐housed conservation breeding programs
inferred← citeshttps://doi.org/10.1111/eva.13322openalex-snapshot
Genome‐wide analysis of natural and restored eastern oyster populations reveals local adaptation and positive impacts of planting frequency and broodstock number
inferred← citeshttps://doi.org/10.1111/eva.13515openalex-snapshot
Genetic diversity in global populations of the critically endangered addax ( Addax nasomaculatus ) and its implications for conservation
inferred← citeshttps://doi.org/10.1111/eva.13520openalex-snapshot
Genetic diversity and structure of a recent fish invasion: Tench (Tinca tinca) in eastern North America
inferred← citeshttps://doi.org/10.1111/eva.13521openalex-snapshot
Effects of hunting on genetic diversity, inbreeding and dispersal in Finnish black grouse (Lyrurus tetrix)
inferred← citeshttps://doi.org/10.1111/evo.13678openalex-snapshot
Heterozygosity and asymmetry: Ectodysplasin as a form of genetic stress in marine threespine stickleback
inferred← citeshttps://doi.org/10.1111/gcb.17587openalex-snapshot
Recurrent Extreme Climatic Events Are Driving Gorgonian Populations to Local Extinction: Low Adaptive Potential to Marine Heatwaves
inferred← citeshttps://doi.org/10.1111/jav.03034openalex-snapshot
Extra‐pair paternity correlates with genetic diversity, but not breeding density, in a Neotropical passerine, the black catbird
inferred← citeshttps://doi.org/10.1111/jeb.13533openalex-snapshot
No evidence of inbreeding depression in fast declining herds of migratory caribou
inferred← citeshttps://doi.org/10.1111/jeb.13542openalex-snapshot
Male age and its association with reproductive traits in captive and wild house sparrows
inferred← citeshttps://doi.org/10.1111/jeb.13987openalex-snapshot
Challenging a host–pathogen paradigm: Susceptibility to chytridiomycosis is decoupled from genetic erosion
inferred← citeshttps://doi.org/10.1111/jzo.12424openalex-snapshot
Heterozygosity but not inbreeding coefficient predicts parasite burdens in the banded mongoose
inferred← citeshttps://doi.org/10.1111/jzo.12466openalex-snapshot
The causes and consequences of inbreeding avoidance and tolerance in cooperatively breeding vertebrates
inferred← citeshttps://doi.org/10.1111/mec.13681openalex-snapshot
Genomic analysis reveals depression due to both individual and maternal inbreeding in a free‐living mammal population
inferred← citeshttps://doi.org/10.1111/mec.14570openalex-snapshot
A high‐quality pedigree and genetic markers both reveal inbreeding depression for quality but not survival in a cooperative mammal
inferred← citeshttps://doi.org/10.1111/mec.14791openalex-snapshot
Monitoring age‐related trends in genomic diversity of Australian lungfish
inferred← citeshttps://doi.org/10.1111/mec.14979openalex-snapshot
Contrasting heterozygosity‐fitness correlations across life in a long‐lived seabird
inferred← citeshttps://doi.org/10.1111/mec.15070openalex-snapshot
Fur seal microbiota are shaped by the social and physical environment, show mother–offspring similarities and are associated with host genetic quality
inferred← citeshttps://doi.org/10.1111/mec.15540openalex-snapshot
Accounting for cryptic population substructure enhances detection of inbreeding depression with genomic inbreeding coefficients: an example from a critically endangered marsupial
inferred← citeshttps://doi.org/10.1111/mec.15553openalex-snapshot
Negative effects of individual heterozygosity on reproductive success in a wild bird population
inferred← citeshttps://doi.org/10.1111/mec.16068openalex-snapshot
Genomic data of different resolutions reveal consistent inbreeding estimates but contrasting homozygosity landscapes for the threatened Aotearoa New Zealand hihi
inferred← citeshttps://doi.org/10.1111/mec.16070openalex-snapshot
The effects of climate and demographic history in shaping genomic variation across populations of the Desert Horned Lizard (Phrynosoma platyrhinos)
inferred← citeshttps://doi.org/10.1111/mec.16135openalex-snapshot
Functional immunogenetic variation, rather than local adaptation, predicts ectoparasite infection intensity in a model fish species
inferred← citeshttps://doi.org/10.1111/mec.16676openalex-snapshot
Susceptibility to a sexually transmitted disease in a wild koala population shows heritable genetic variance but no inbreeding depression
inferred← citeshttps://doi.org/10.1111/mec.16760openalex-snapshot
Transitioning from microsatellites to SNP ‐based microhaplotypes in genetic monitoring programmes: Lessons from paired data spanning 20 years
inferred← citeshttps://doi.org/10.1111/mec.17190openalex-snapshot
Whole‐genome SNP genotyping unveils ancestral and recent introgression in wild and domestic goats
inferred← citeshttps://doi.org/10.1111/mec.17220openalex-snapshot
Comparative population genomics of manta rays has global implications for management
inferred← citeshttps://doi.org/10.1111/mec.17505openalex-snapshot
Pollinator shifts despite hybridisation in the Cape's hyperdiverse heathers (Erica, Ericaceae)
inferred← citeshttps://doi.org/10.1111/mec.17555openalex-snapshot
Demographic History and Adaptive Evolution of Indo‐Pacific Bottlenose Dolphins (Tursiops aduncus) in Western Australia
inferred← citeshttps://doi.org/10.1111/mec.70058openalex-snapshot
Sex‐Dependent Influence of Major Histocompatibility Complex Diversity on Fitness in a Social Mammal
inferred← citeshttps://doi.org/10.1111/mec.70380openalex-snapshot
Man‐Made Barriers and Augmentation Drive Spatial and Temporal Trends of Genetic Diversity and Effective Population Size in a Riverine Fish
inferred← citeshttps://doi.org/10.1111/nph.20073openalex-snapshot
Evolutionary drivers of reproductive fitness in two endangered forest trees
inferred← citeshttps://doi.org/10.1126/science.adl2356openalex-snapshot
Rapid establishment of species barriers in plants compared with that in animals
inferred← citeshttps://doi.org/10.1134/s1995425517060099openalex-snapshot
Genetic characteristics of Kodar snow sheep using SNP markers
inferred← citeshttps://doi.org/10.11575/prism/38850openalex-snapshot
Quantifying the impacts of inbreeding depression on adult reproductive success, survival, and foal birth in the feral horses (Equus ferus caballus) of Sable Island, Nova Scotia
inferred← citeshttps://doi.org/10.1186/s12711-026-01074-5openalex-snapshot
Unravelling the genetic structure and genetic relationships of indigenous Greek sheep breeds using SNP markers
inferred← citeshttps://doi.org/10.1186/s12862-024-02209-2openalex-snapshot
Genome-wide diversity, population structure and signatures of inbreeding in the African buffalo in Mozambique
inferred← citeshttps://doi.org/10.1186/s12864-018-5044-8openalex-snapshot
Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline
inferred← citeshttps://doi.org/10.1186/s12864-020-07084-xopenalex-snapshot
Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis
inferred← citeshttps://doi.org/10.1186/s12864-022-08984-wopenalex-snapshot
Genome-wide SNPs in the spiny lobster Panulirus homarus reveal a hybrid origin for its subspecies
inferred← citeshttps://doi.org/10.1186/s12898-019-0228-xopenalex-snapshot
Both candidate gene and neutral genetic diversity correlate with parasite resistance in female Mediterranean mouflon
inferred← citeshttps://doi.org/10.1186/s40657-018-0139-0openalex-snapshot
Conservation genetics of a resident population of Greylag Goose (Anser anser) at the southernmost limit of the species’ distribution in Europe
inferred← citeshttps://doi.org/10.1186/s41065-024-00339-7openalex-snapshot
The Jan Sjödin faba bean mutant collection: morphological and molecular characterization
inferred← citeshttps://doi.org/10.1371/journal.pone.0182853openalex-snapshot
Method matters: Experimental evidence for shorter avian sperm in faecal compared to abdominal massage samples
inferred← citeshttps://doi.org/10.1371/journal.pone.0194056openalex-snapshot
Genetic structure of wild pea (Pisum sativum subsp. elatius) populations in the northern part of the Fertile Crescent reflects moderate cross-pollination and strong effect of geographic but not environmental distance
inferred← citeshttps://doi.org/10.1371/journal.pone.0223953openalex-snapshot
Genomic impact of severe population decline in a nomadic songbird
inferred← citeshttps://doi.org/10.1371/journal.pone.0259124openalex-snapshot
Bioindicator snake shows genomic signatures of natural and anthropogenic barriers to gene flow
inferred← citeshttps://doi.org/10.1371/journal.pone.0272713openalex-snapshot
Lack of genetic differentiation in yellowfin tuna has conservation implications in the Eastern Pacific Ocean
inferred← citeshttps://doi.org/10.1371/journal.pone.0294534openalex-snapshot
Differences in the genomic diversity, structure, and inbreeding patterns in wild and managed populations of Agave potatorum Zucc. used in the production of Tobalá mezcal in Southern Mexico
inferred← citeshttps://doi.org/10.1371/journal.pone.0324581openalex-snapshot
How social and economic policies have affected the genome of mezcal agaves: The contrasting stories of Bacanora and Espadín
inferred← citeshttps://doi.org/10.1534/g3.118.200171openalex-snapshot
RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding
inferred← citeshttps://doi.org/10.1534/g3.119.400239openalex-snapshot
Partial Selfing Can Reduce Genetic Loads While Maintaining Diversity During Experimental Evolution
inferred← citeshttps://doi.org/10.1534/g3.120.401268openalex-snapshot
An 85K SNP Array Uncovers Inbreeding and Cryptic Relatedness in an Antarctic Fur Seal Breeding Colony
inferred← citeshttps://doi.org/10.1534/genetics.119.302057openalex-snapshot
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples
inferred← citeshttps://doi.org/10.1645/22-68openalex-snapshot
Trematode Clone Abundance Distributions: An Eco-Evolutionary Link between Parasite Transmission and Parasite Mating Systems
inferred← citeshttps://doi.org/10.18174/459842openalex-snapshot
A matter of taste : the role of compatibility in mate preferences in great tits
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3497287/v1openalex-snapshot
Measures of inbreeding and heterozygosity-fitness correlations in koalas (Phascolarctos cinereus) from south-east Queensland, Australia
inferred← citeshttps://doi.org/10.21203/rs.3.rs-4939130/v1openalex-snapshot
Jan Sjödin faba bean mutation collection: status and molecular characterization
inferred← citeshttps://doi.org/10.21203/rs.3.rs-9612513/v1openalex-snapshot
Genetic diversity of two endemic axolotl species from Michoacán, Mexico
inferred← citeshttps://doi.org/10.2139/ssrn.5565130openalex-snapshot
Range-wide genomic differentiation is driven by geography and climate in the Agave cerulata, an endemic Agave complex of the Baja California peninsula
inferred← citeshttps://doi.org/10.24072/pcjournal.623openalex-snapshot
Population structure and genetic diversity of the Critically Endangered bowmouth guitarfish (Rhina ancylostomus) in the Northwest Indian Ocean
inferred← citeshttps://doi.org/10.2983/035.043.0210openalex-snapshot
Population Genetics of Delaware Inland Bays Oysters: A Case Study on Hatchery-Stocked Oyster Gardening
inferred← citeshttps://doi.org/10.32417/1997-4868-2024-24-09-1158-1171openalex-snapshot
The relationship between genomic and estimated inbreeding in the population of Holstein cattle in Sverdlovsk region.
inferred← citeshttps://doi.org/10.32614/cran.package.inbreedropenalex-snapshot
inbreedR: Analysing Inbreeding Based on Genetic Markers
inferred← citeshttps://doi.org/10.3354/dao03543openalex-snapshot
Locality, time and heterozygosity affect chytrid infection in yellow-bellied toads
inferred← citeshttps://doi.org/10.3354/meps14926openalex-snapshot
Genomic evaluation of Australian sub-adult white sharks Carcharodon carcharias reveals kin aggregation with low population size
inferred← citeshttps://doi.org/10.3389/fgene.2020.567969openalex-snapshot
Comparing Genomic Signatures of Selection Between the Abbassa Strain and Eight Wild Populations of Nile Tilapia (Oreochromis niloticus) in Egypt
inferred← citeshttps://doi.org/10.3389/fgene.2021.717764openalex-snapshot
Genome-Wide SNP Discovery and Population Genetic Analysis of Mesocentrotus nudus in China Seas
inferred← citeshttps://doi.org/10.3389/fmars.2019.00494openalex-snapshot
Assessment of the Genetic Connectivity Between Farmed Populations on a Typical Kelp Farm and Adjacent Spontaneous Populations of Saccharina japonica (Phaeophyceae, Laminariales) in China
inferred← citeshttps://doi.org/10.3389/fmars.2022.921912openalex-snapshot
Genomic consequences and selection efficacy in sympatric sexual versus asexual kelps
inferred← citeshttps://doi.org/10.3389/fmars.2023.1122058openalex-snapshot
High genetic diversity revealed in the native populations of Undaria pinnatifida from China by mitochondrial sequences and nuclear microsatellites
inferred← citeshttps://doi.org/10.3389/fmars.2025.1707758openalex-snapshot
Mating systems, parentage, and reproductive success of beluga whales in Bristol Bay, Alaska
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