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Genome‐wide RNA ‐Seq analysis of breast muscles of two broiler chicken groups differing in shear force

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Functional genomics in chickens: development of integrated‐systems microarrays for transcriptional profiling and discovery of regulatory pathways
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Microarray resources for genetic and genomic studies in chicken: A review
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Avidin is induced in chicken embryo fibroblasts by viral transformation and cell damage.
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Effect of high-oxygen atmosphere packaging on mechanical properties of single muscle fibres from bovine and porcine longissimus dorsi
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New SNP of the porcine Perilipin 2 (PLIN2) gene, association with carcass traits and expression analysis in skeletal muscle
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Age-related changes in collagen gene expression in the muscles of mdx dystrophic and normal mice
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PAT proteins, an ancient family of lipid droplet proteins that regulate cellular lipid stores
inferredcites →https://doi.org/10.1016/j.livsci.2012.02.023openalex-snapshot
Analysis of polymorphisms of cathepsin B and cystatin B impact on economically important traits in pigs raised in Poland
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Identification of myofibrillar substrates for μ-calpain
inferredcites →https://doi.org/10.1016/j.meatsci.2010.05.004openalex-snapshot
Biochemistry of postmortem muscle — Lessons on mechanisms of meat tenderization
inferredcites →https://doi.org/10.1016/j.meatsci.2011.02.020openalex-snapshot
Perilipin 1 and perilipin 2 protein localization and gene expression study in skeletal muscles of European cross-breed pigs with different intramuscular fat contents
inferredcites →https://doi.org/10.1016/j.metabol.2008.11.011openalex-snapshot
RARRES2, encoding the novel adipokine chemerin, is a genetic determinant of disproportionate regional body fat distribution: a comparative magnetic resonance imaging study
inferredcites →https://doi.org/10.1016/j.vetimm.2005.02.013openalex-snapshot
Gene expression profiling of avian macrophage activation
inferredcites →https://doi.org/10.1038/ismej.2009.83openalex-snapshot
Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot
RNA-Seq: a revolutionary tool for transcriptomics
inferredcites →https://doi.org/10.1074/jbc.m110709200openalex-snapshot
Mapping the Ligand-binding Sites and Disease-associated Mutations on the Most Abundant Protein in the Human, Type I Collagen
inferredcites →https://doi.org/10.1074/jbc.m113.496604openalex-snapshot
ASB2α, an E3 Ubiquitin Ligase Specificity Subunit, Regulates Cell Spreading and Triggers Proteasomal Degradation of Filamins by Targeting the Filamin Calponin Homology 1 Domain
inferredcites →https://doi.org/10.1080/00071668.2015.1058918openalex-snapshot
The normalisation ofCAPNgene expression inM. pectoralis superficialisin broiler lines differing in growth rate and their relationship to breast muscle tenderness
inferredcites →https://doi.org/10.1080/10495398.2012.742909openalex-snapshot
Associations of Polymorphisms in Four Candidate Genes with Carcass and/or Meat-Quality Traits in Two Meat-Type Chicken Lines
inferredcites →https://doi.org/10.1083/jcb.148.1.115openalex-snapshot
Filamin 2 (FLN2): A Muscle-specific Sarcoglycan Interacting Protein
inferredcites →https://doi.org/10.1093/bfgp/elp013openalex-snapshot
Advantages of next-generation sequencing versus the microarray in epigenetic research
inferredcites →https://doi.org/10.1111/age.12184openalex-snapshot
Comprehensive analysis of the whole transcriptomes from two different pig breeds using RNA ‐Seq method
inferredcites →https://doi.org/10.1152/ajpendo.00531.2006openalex-snapshot
Muscle growth after postdevelopmental myostatin gene knockout
inferredcites →https://doi.org/10.1152/physiolgenomics.00248.2005openalex-snapshot
Gene expression profiling during cellular differentiation in the embryonic pituitary gland using cDNA microarrays
inferredcites →https://doi.org/10.1152/physrev.00031.2003openalex-snapshot
Role of Extracellular Matrix in Adaptation of Tendon and Skeletal Muscle to Mechanical Loading
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2164-12-274openalex-snapshot
The development and characterization of a 60K SNP chip for chicken
inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot
A scaling normalization method for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1201/9781482279047openalex-snapshot
Chemical and Functional Properties of Food Proteins
inferredcites →https://doi.org/10.1210/me.2003-0121openalex-snapshot
Transcriptional Profiling of the Chick Pineal Gland, a Photoreceptive Circadian Oscillator and Pacemaker
inferredcites →https://doi.org/10.1242/jcs.114.8.1473openalex-snapshot
Avidin expression during chick chondrocyte and myoblast development in vitro and in vivo: regulation of cell proliferation
inferredcites →https://doi.org/10.1371/journal.pone.0073709openalex-snapshot
Increased Plin2 Expression in Human Skeletal Muscle Is Associated with Sarcopenia and Muscle Weakness
inferredcites →https://doi.org/10.1387/ijdb.2485692openalex-snapshot
Development of progestin-specific response in the chicken oviduct
inferredcites →https://doi.org/10.2337/db07-0648openalex-snapshot
FGFR4 Prevents Hyperlipidemia and Insulin Resistance but Underlies High-Fat Diet–Induced Fatty Liver
inferredcites →https://doi.org/10.2478/aoas-2014-0032openalex-snapshot
New Polymorphisms in Regulatory Region of CAPN3 Gene with no Effect on Gene Expression in Breast Muscle of Broiler Chickens
inferredcites →https://doi.org/10.2478/v10220-012-0052-0openalex-snapshot
Effect of slaughter age on performance and meat quality of slow-growing broiler chickens
inferredcites →https://doi.org/10.2527/2001.79123062xopenalex-snapshot
Consumer thresholds for establishing the value of beef tenderness.
inferredcites →https://doi.org/10.2527/2001.792392xopenalex-snapshot
The influence of ultimate pH and intramuscular fat content on pork tenderness and tenderization.
inferredcites →https://doi.org/10.2527/2005.8392058xopenalex-snapshot
Genetic parameter estimates of meat quality traits in Duroc pigs selected for average daily gain, longissimus muscle area, backfat thickness, and intramuscular fat content
inferredcites →https://doi.org/10.2527/animalsci2002.80e-suppl_2e8xopenalex-snapshot
Role of the extracellular matrix in muscle growth and development

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1002/ar.24087openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-08-100593-4.00012-6openalex-snapshot
Transcriptomics of Meat Quality
inferred← citeshttps://doi.org/10.1016/b978-0-12-815731-2.00003-0openalex-snapshot
Biochemical methods of estimating time since death
inferred← citeshttps://doi.org/10.1016/b978-0-323-85879-3.00005-2openalex-snapshot
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Transcriptome analysis reveals the mechanism by which fermented Broussonetia papyrifera influences meat quality of Taihe black-bone silky fowl
inferred← citeshttps://doi.org/10.1016/j.bbrc.2018.11.044openalex-snapshot
Analysis of gene co-expression networks and function modules at different developmental stages of chicken breast muscle
inferred← citeshttps://doi.org/10.1016/j.bbrc.2021.04.086openalex-snapshot
Transcriptome profile analysis reveals KLHL30 as an essential regulator for myoblast differentiation
inferred← citeshttps://doi.org/10.1016/j.gene.2022.146801openalex-snapshot
Transcriptome analysis of breast muscle and liver in full-sibling hybrid broilers at different ages
inferred← citeshttps://doi.org/10.1016/j.jenvman.2022.116919openalex-snapshot
Ammonia emissions, impacts, and mitigation strategies for poultry production: A critical review
inferred← citeshttps://doi.org/10.1016/j.jlr.2024.100664openalex-snapshot
PCPE2: Expression of multifunctional extracellular glycoprotein associated with diverse cellular functions
inferred← citeshttps://doi.org/10.1016/j.psj.2026.107719openalex-snapshot
Integrated multi-omics analysis reveals breed-specific molecular and metabolic architectures of breast muscle in Cherry Valley, Muscovy, and mule ducks
inferred← citeshttps://doi.org/10.1038/s41598-017-18389-5openalex-snapshot
RNA-Seq reveals seven promising candidate genes affecting the proportion of thick egg albumen in layer-type chickens
inferred← citeshttps://doi.org/10.1038/s41598-018-20373-6openalex-snapshot
Identification of molecular pathways and candidate genes associated with cocks’ comb size trait by genome-wide transcriptome analysis
inferred← citeshttps://doi.org/10.1038/srep45564openalex-snapshot
Genome-wide DNA methylation profiles reveal novel candidate genes associated with meat quality at different age stages in hens
inferred← citeshttps://doi.org/10.1080/00439339.2024.2384868openalex-snapshot
Controlling odour emissions in poultry production through dietary interventions: prospects and challenges
inferred← citeshttps://doi.org/10.1101/295535openalex-snapshot
Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken
inferred← citeshttps://doi.org/10.1111/age.12654openalex-snapshot
Detection of genetic variants between different Polish Landrace and Puławska pigs by means of RNA ‐seq analysis
inferred← citeshttps://doi.org/10.1139/gen-2020-0163openalex-snapshot
Genes and proteins associated with ribeye area and meat tenderness in a commercial Nellore cattle population
inferred← citeshttps://doi.org/10.1155/2018/6049469openalex-snapshot
Transcriptomic Changes in Broiler Chicken Hypothalamus during Growth and Development
inferred← citeshttps://doi.org/10.1155/2020/9478949openalex-snapshot
Identification of Differentially Expressed Genes in Different Types of Broiler Skeletal Muscle Fibers Using the RNA‐seq Technique
inferred← citeshttps://doi.org/10.1186/s12864-016-2961-2openalex-snapshot
High concentrations of atmospheric ammonia induce alterations of gene expression in the breast muscle of broilers (Gallus gallus) based on RNA-Seq
inferred← citeshttps://doi.org/10.1186/s12864-017-4323-0openalex-snapshot
Differences in global gene expression in muscle tissue of Nellore cattle with divergent meat tenderness
inferred← citeshttps://doi.org/10.1186/s12864-018-4972-7openalex-snapshot
Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken
inferred← citeshttps://doi.org/10.1186/s12864-019-5904-xopenalex-snapshot
Prediction of hub genes associated with intramuscular fat content in Nelore cattle
inferred← citeshttps://doi.org/10.1186/s12864-020-06884-5openalex-snapshot
Identification of candidate genes and regulatory factors related to growth rate through hypothalamus transcriptome analyses in broiler chickens
inferred← citeshttps://doi.org/10.1186/s12864-021-07453-0openalex-snapshot
Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.1371/journal.pone.0173824openalex-snapshot
Transcriptomic profile of leg muscle during early growth in chicken
inferred← citeshttps://doi.org/10.1371/journal.pone.0180403openalex-snapshot
Deep RNA sequencing of pectoralis muscle transcriptomes during late-term embryonic to neonatal development in indigenous Chinese duck breeds
inferred← citeshttps://doi.org/10.1371/journal.pone.0215006openalex-snapshot
Integrative analysis of long noncoding RNA and mRNA reveals candidate lncRNAs responsible for meat quality at different physiological stages in Gushi chicken
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2016-0101openalex-snapshot
A comprehensive transcriptome analysis of skeletal muscles in two Polish pig breeds differing in fat and meat quality traits
inferred← citeshttps://doi.org/10.3382/ps/pez504openalex-snapshot
Influence of free-range days on growth performance, carcass traits, meat quality, lymphoid organ indices, and blood biochemistry of Wannan Yellow chickens
inferred← citeshttps://doi.org/10.3389/fgene.2020.00344openalex-snapshot
Genome Wide Assessment of Genetic Variation and Population Distinctiveness of the Pig Family in South Africa
inferred← citeshttps://doi.org/10.3389/fgene.2024.1416283openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fgene.2025.1740301openalex-snapshot
Omics in mini-livestock: a genomic perspective on the future of sustainable food systems
inferred← citeshttps://doi.org/10.3389/fgene.2026.1931836openalex-snapshot
Effects of compound Chinese herbal microecological preparations on growth performance, meat quality and rumen microflora of Simmental cattle
inferred← citeshttps://doi.org/10.3389/fvets.2025.1579415openalex-snapshot
Effect of areca nut extracts on growth performance, slaughtering performance, and meat quality of broiler chickens
inferred← citeshttps://doi.org/10.3390/ani10010119openalex-snapshot
Identification of Novel lncRNAs Differentially Expressed in Placentas of Chinese Ningqiang Pony and Yili Horse Breeds
inferred← citeshttps://doi.org/10.3390/ani11092596openalex-snapshot
RNA Profiles of the Korat Chicken Breast Muscle with Increased Carnosine Content Produced through Dietary Supplementation with β-Alanine or L-Histidine
inferred← citeshttps://doi.org/10.3390/ani14162387openalex-snapshot
Exercise Volume Provides New Insight into the Effects of Housing Systems on Chicken Body Conformation, Carcass Traits, Meat Quality, and Serum Biochemical Parameters
inferred← citeshttps://doi.org/10.3390/foods13132008openalex-snapshot
RNA-Seq Reveals Pathways Responsible for Meat Quality Characteristic Differences between Two Yunnan Indigenous Chicken Breeds and Commercial Broilers
inferred← citeshttps://doi.org/10.3390/genes10090712openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/genes14051048openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/genes14061213openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/genes15060746openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/nu17162678openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/poultry2020024openalex-snapshot
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inferred← citeshttps://doi.org/10.5194/aab-64-405-2021openalex-snapshot
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inferred← citeshttps://doi.org/10.55934/10.55934/2587-8824-2023-30-1-59-66openalex-snapshot
Влияние препарата Микрозим на показатели белкового обмена растущих свиней на фоне снижения уровня аммиака и сероводорода в газовоздушной среде производственных помещений
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175809openalex-snapshot
Additional file 1 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175812openalex-snapshot
Additional file 2 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175815openalex-snapshot
Additional file 3 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175818openalex-snapshot
Additional file 4 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175821openalex-snapshot
Additional file 5 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175824openalex-snapshot
Additional file 6 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175827openalex-snapshot
Additional file 7 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175830openalex-snapshot
Additional file 8 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14175833openalex-snapshot
Additional file 9 of Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
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