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Analysis of the porcine APOA 2 gene expression in liver, polymorphism identification and association with fatty acid composition traits

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2008.07.048openalex-snapshot

Identification of a Lipokine, a Lipid Hormone Linking Adipose Tissue to Systemic Metabolism

inferredcites →https://doi.org/10.1016/s0022-2275(20)38108-6openalex-snapshot

Distribution of high density lipoprotein particles with different apoprotein composition: particles with A-I and A-II and particles with A-I but no A-II.

inferredcites →https://doi.org/10.1042/bse0420089openalex-snapshot

Fatty acid metabolism in adipose tissue, muscle and liver in health and disease

inferredcites →https://doi.org/10.1046/j.1365-2052.2003.01036.xopenalex-snapshot

Polymorphism analysis and mapping to SSC4 of the porcine apolipoprotein A2 (APOA2) gene

inferredcites →https://doi.org/10.1073/pnas.1530509100openalex-snapshot

Statistical significance for genomewide studies

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Antiglucocorticoid activity of hepatocyte nuclear factor-6

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Apolipoprotein AII Is a Regulator of Very Low Density Lipoprotein Metabolism and Insulin Resistance

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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

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MatInspector and beyond: promoter analysis based on transcription factor binding sites

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Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era

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Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping

inferredcites →https://doi.org/10.1111/asj.12308openalex-snapshot

Genomic structural analysis of porcine fatty acid desaturase cluster on chromosome 2

inferredcites →https://doi.org/10.1111/j.1365-2052.2008.01811.xopenalex-snapshot

Expression of the porcine adrenergic receptor beta 2 gene in longissimus dorsi muscle is affected by cis‐regulatory DNA variation

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STRUCTURE, FUNCTION, AND DIETARY REGULATION OF Δ6, Δ5, AND Δ9 DESATURASES

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Sex Hormones and Their Receptors Regulate Liver Energy Homeostasis

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New Insights Into the Regulation of HDL Metabolism and Reverse Cholesterol Transport

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Detection of quantitative trait loci for growth and fatness in pigs

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Genome-wide mapping of Quantitative Trait Loci for fatness, fat cell characteristics and fat metabolism in three porcine F2 crosses

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Qxpak.5: Old mixed model solutions for new genomics problems

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LASAGNA: A novel algorithm for transcription factor binding site alignment

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Refined localization of the FAT1 quantitative trait locus on pig chromosome 4 by marker-assisted backcrossing

inferredcites →https://doi.org/10.1186/1471-2164-13-547openalex-snapshot

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

inferredcites →https://doi.org/10.1186/1471-2164-14-845openalex-snapshot

Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data

inferredcites →https://doi.org/10.1186/1471-2164-15-232openalex-snapshot

From SNP co-association to RNA co-expression: Novel insights into gene networks for intramuscular fatty acid composition in porcine

inferredcites →https://doi.org/10.1186/gb-2002-3-7-research0034openalex-snapshot

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

inferredcites →https://doi.org/10.1371/journal.pgen.0020093openalex-snapshot

Allele-Specific KRT1 Expression Is a Complex Trait

inferredcites →https://doi.org/10.1371/journal.pgen.1000006openalex-snapshot

Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression

inferredcites →https://doi.org/10.1371/journal.pone.0006524openalex-snapshot

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

inferredcites →https://doi.org/10.1371/journal.pone.0023506openalex-snapshot

Transcriptional Profiling of Human Liver Identifies Sex-Biased Genes Associated with Polygenic Dyslipidemia and Coronary Artery Disease

inferredcites →https://doi.org/10.1371/journal.pone.0080385openalex-snapshot

DAG Expression: High-Throughput Gene Expression Analysis of Real-Time PCR Data Using Standard Curves for Relative Quantification

inferredcites →https://doi.org/10.1373/clinchem.2006.084863openalex-snapshot

The −256T>C Polymorphism in the Apolipoprotein A-II Gene Promoter Is Associated with Body Mass Index and Food Intake in the Genetics of Lipid Lowering Drugs and Diet Network Study

inferredcites →https://doi.org/10.1385/1-59259-192-2:365openalex-snapshot

Primer3 on the WWW for General Users and for Biologist Programmers

inferredcites →https://doi.org/10.2144/02325dd03openalex-snapshot

Rapid SNP Allele Frequency Determination in Genomic DNA Pools by Pyrosequencing TM

inferredcites →https://doi.org/10.2144/02325dd04openalex-snapshot

Assessing Allele Frequencies of Single Nucleotide Polymorphisms in DNA Pools by Pyrosequencing TM Technology

inferredcites →https://doi.org/10.2527/2000.78102525xopenalex-snapshot

A QTL on pig chromosome 4 affects fatty acid metabolism: evidence from an Iberian by Landrace intercross.

inferredcites →https://doi.org/10.2527/jas.2005-632openalex-snapshot

Increasing the amount of n-3 fatty acid in meat from young Holstein bulls through nutrition1

inferredcites →https://doi.org/10.2527/jas.2011-4797openalex-snapshot

Identification and association analysis of several hundred single nucleotide polymorphisms within candidate genes for back fat thickness in Italian Large White pigs using a selective genotyping approach1

inferredcites →https://doi.org/10.2527/jas.2011-4900openalex-snapshot

Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross1

inferredcites →https://doi.org/10.3109/07853890.2011.573498openalex-snapshot

Apolipoprotein A-II: Evaluating its significance in dyslipidaemia, insulin resistance, and atherosclerosis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Comparative RNA-seq profiling of hepatic transcriptomes in Kadaknath and commercial broiler chickens at distinct growth stages

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Association study between backfat fatty acid composition and SNPs in candidate genes highlights the effect of FASN polymorphism in large white pigs

inferred← citeshttps://doi.org/10.1016/j.resp.2016.10.006openalex-snapshot

C57BL/6J mouse apolipoprotein A2 gene is deterministic for apnea

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Expression analysis of candidate genes for fatty acid composition in adipose tissue and identification of regulatory regions

inferred← citeshttps://doi.org/10.1038/s41598-020-70894-2openalex-snapshot

Identification of strong candidate genes for backfat and intramuscular fatty acid composition in three crosses based on the Iberian pig

inferred← citeshttps://doi.org/10.1038/s41598-023-48823-wopenalex-snapshot

CETP and APOA2 polymorphisms are associated with weight loss and healthy eating behavior changes in response to digital lifestyle modifications

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Comparative Fatty Acid Composition of Brahman Cross (BX) Cattle Beef from Different Muscle Types

inferred← citeshttps://doi.org/10.1111/age.12971openalex-snapshot

An integration analysis based on genomic, transcriptomic and QTX information reveals credible candidate genes for fat‐related traits in pigs

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Investigation of allele-specific expression of genes involved in adipogenesis and lipid metabolism suggests complex regulatory mechanisms of PPARGC1A expression in porcine fat tissues

inferred← citeshttps://doi.org/10.1371/journal.pone.0190184openalex-snapshot

Using genome wide association studies to identify common QTL regions in three different genetic backgrounds based on Iberian pig breed

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Base editing in pigs for precision breeding

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Indications of associations between polymorphism of the selected genes located on the porcine chromosome 4 and carcass quality traits

inferred← citeshttps://doi.org/10.3389/fgene.2024.1351429openalex-snapshot

Construction of a co-expression network affecting intramuscular fat content and meat color redness based on transcriptome analysis

inferred← citeshttps://doi.org/10.3389/fphar.2019.00049openalex-snapshot

Prediction of Drug Positioning for Quan-Du-Zhong Capsules Against Hypertensive Nephropathy Based on the Robustness of Disease Network

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Genome-Wide Scan for Runs of Homozygosity Identifies Candidate Genes in Three Pig Breeds

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agReg-SNPdb: A Database of Regulatory SNPs for Agricultural Animal Species

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Genetic Marker Discovery in Complex Traits: A Field Example on Fat Content and Composition in Pigs

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Strategies towards Improved Feed Efficiency in Pigs Comprise Molecular Shifts in Hepatic Lipid and Carbohydrate Metabolism

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Profiling of Chromatin Accessibility in Pigs across Multiple Tissues and Developmental Stages

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Tracking the important role of JUNB in hepatocellular carcinoma by single‑cell sequencing analysis

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