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Taxonomy and diversity of bacterial communities associated with marine sediments from Chilean salmonid farms

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Road Map of the Phylum C ampylobacterota
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Basic Local Alignment Search Tool
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The Genus Flavobacterium
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The Family Rhodobacteraceae
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Response of Benthic Protozoa and Thraustochytrid Protists to Fish Farm Impact in Seagrass (Posidonia oceanica) and Soft-Bottom Sediments
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Stimulation of sulfate reduction rates in Mediterranean fish farm sediments inhabited by the seagrass Posidonia oceanica
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Insights into the diversity and metabolic function of bacterial communities in sediments from Chilean salmon aquaculture sites
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Comparison of bacterial communities in fish farm sediments along an organic enrichment gradient
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The study of structure of anaerobic granules and methane producing pathways of pilot-scale UASB reactors treating municipal wastewater under sub-mesophilic conditions
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Oxygen modulates bacterial community composition in the coastal upwelling waters off central Chile
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Fish farming impact on sediments and macrofauna associated with seagrass meadows in the Mediterranean
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Impacts of cage fish farms in a large reservoir on water and sediment chemistry
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Fish-farm impact on metazoan meiofauna in the Mediterranean Sea: Analysis of regional vs. habitat effects
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Impacts of marine aquaculture at large spatial scales: Evidences from N and P catchment loading and phytoplankton biomass
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Sustainable impact of mussel farming in the Adriatic Sea (Mediterranean Sea): evidence from biochemical, microbial and meiofaunal indicators
inferredcites →https://doi.org/10.1016/j.marpolbul.2008.05.020openalex-snapshot
Effects of fish farm waste on Posidonia oceanica meadows: Synthesis and provision of monitoring and management tools
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Sulphur-cycling bacteria and ciliated protozoans in a Beggiatoaceae mat covering organically enriched sediments beneath a salmon farm in a southern Chilean fjord
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Microbial diversity in the deep-sea sediments of Iheya North and Iheya Ridge, Okinawa Trough
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Carbon cycling in a zero-discharge mariculture system
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Microbial and Meiofaunal Response to Intensive Mussel-Farm Biodeposition in Coastal Sediments of the Western Mediterranean
inferredcites →https://doi.org/10.1016/s0168-6445(00)00054-1openalex-snapshot
Life at the oxic–anoxic interface: microbial activities and adaptations
inferredcites →https://doi.org/10.1016/s0168-6496(01)00206-9openalex-snapshot
The ecology of Cytophaga–Flavobacteria in aquatic environments
inferredcites →https://doi.org/10.1023/b:hydr.0000008586.30395.f2openalex-snapshot
Bacterial activities in the sediment of Lake Velencei, Hungary
inferredcites →https://doi.org/10.1023/b:hydr.0000008590.37567.faopenalex-snapshot
Rhizome-associated bacterial communities of healthy and declining reed stands in Lake Velencei, Hungary
inferredcites →https://doi.org/10.1038/ismej.2014.19openalex-snapshot
Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment
inferredcites →https://doi.org/10.1038/ismej.2014.41openalex-snapshot
Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor
inferredcites →https://doi.org/10.1038/ismej.2015.257openalex-snapshot
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments
inferredcites →https://doi.org/10.1038/nature11586openalex-snapshot
Filamentous bacteria transport electrons over centimetre distances
inferredcites →https://doi.org/10.1038/nmeth.1361openalex-snapshot
Accurate determination of microbial diversity from 454 pyrosequencing data
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/nrmicro1341openalex-snapshot
Microbial biogeography: putting microorganisms on the map
inferredcites →https://doi.org/10.1038/s41396-019-0373-4openalex-snapshot
Quantifying population-specific growth in benthic bacterial communities under low oxygen using H218O
inferredcites →https://doi.org/10.1038/s41396-020-0588-4openalex-snapshot
Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities
inferredcites →https://doi.org/10.1093/bioinformatics/btl529openalex-snapshot
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btr381openalex-snapshot
UCHIME improves sensitivity and speed of chimera detection
inferredcites →https://doi.org/10.1093/bioinformatics/btw313openalex-snapshot
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
inferredcites →https://doi.org/10.1093/femsec/fiv056openalex-snapshot
Manganese and iron as structuring parameters of microbial communities in Arctic marine sediments from the Baffin Bay
inferredcites →https://doi.org/10.1093/femsec/fiv089openalex-snapshot
Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high-throughput sequencing
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1099/ijs.0.03042-0openalex-snapshot
Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
inferredcites →https://doi.org/10.1111/1758-2229.12538openalex-snapshot
The life sulfuric: microbial ecology of sulfur cycling in marine sediments
inferredcites →https://doi.org/10.1111/j.1574-6941.2005.00012.xopenalex-snapshot
Bacterial diversity in organically-enriched fish farm sediments
inferredcites →https://doi.org/10.1111/raq.12337openalex-snapshot
Environmental issues in Chilean salmon farming: a review
inferredcites →https://doi.org/10.1126/science.1093892openalex-snapshot
Microbes, Molecules, and Marine Ecosystems
inferredcites →https://doi.org/10.1128/aem.01064-15openalex-snapshot
Cable Bacteria in Freshwater Sediments
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.02164-18openalex-snapshot
Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry
inferredcites →https://doi.org/10.1128/aem.66.4.1692-1697.2000openalex-snapshot
Natural Assemblages of Marine Proteobacteria and Members of the Cytophaga-Flavobacter Cluster Consuming Low- and High-Molecular-Weight Dissolved Organic Matter
inferredcites →https://doi.org/10.1128/aem.71.1.46-50.2005openalex-snapshot
Simultaneous Recovery of Extracellular and Intracellular DNA Suitable for Molecular Studies from Marine Sediments
inferredcites →https://doi.org/10.1128/msystems.00150-17openalex-snapshot
The Life Aquatic at the Microscale
inferredcites →https://doi.org/10.1146/annurev-marine-010814-015708openalex-snapshot
Rethinking Sediment Biogeochemistry After the Discovery of Electric Currents
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-12-38openalex-snapshot
Removing Noise From Pyrosequenced Amplicons
inferredcites →https://doi.org/10.1186/1471-2105-15-293openalex-snapshot
jvenn: an interactive Venn diagram viewer
inferredcites →https://doi.org/10.1186/s12859-017-1841-3openalex-snapshot
SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees
inferredcites →https://doi.org/10.1186/s40793-017-0265-zopenalex-snapshot
Complete genome sequence of the sulfur-oxidizing chemolithoautotrophic Sulfurovum lithotrophicum 42BKTT
inferredcites →https://doi.org/10.1371/journal.pone.0169281openalex-snapshot
Public Perceptions of Aquaculture: Evaluating Spatiotemporal Patterns of Sentiment around the World
inferredcites →https://doi.org/10.1890/06-2028.1openalex-snapshot
EFFECTS OF INTENSIVE MARICULTURE ON SEDIMENT BIOCHEMISTRY
inferredcites →https://doi.org/10.22370/rbmo.2018.53.2.1295openalex-snapshot
Environmental variability at a marine cage culture operation in the Matanchén Bay, SE Gulf of California, Mexico
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3354/aei00007openalex-snapshot
Environmental issues of fish farming in offshore waters: perspectives, concerns and research needs
inferredcites →https://doi.org/10.3354/meps080191openalex-snapshot
Impact of marine fish cage farming on metabolism and sulfate reduction of underlying sediments
inferredcites →https://doi.org/10.3354/meps214025openalex-snapshot
Characterization of carbon and microbial biomass pools in shallow water coastal sediments of the southern Baltic Sea (Nordrügensche Bodden)
inferredcites →https://doi.org/10.3354/meps295091openalex-snapshot
Organic carbon content of sediments as an indicator of stress in the marine benthos
inferredcites →https://doi.org/10.3389/fmicb.2017.00682openalex-snapshot
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
inferredcites →https://doi.org/10.3389/fmicb.2017.00952openalex-snapshot
Cable Bacteria and the Bioelectrochemical Snorkel: The Natural and Engineered Facets Playing a Role in Hydrocarbons Degradation in Marine Sediments
inferredcites →https://doi.org/10.3389/fmicb.2018.03054openalex-snapshot
Temporal Bacterial Surveillance of Salmon Aquaculture Sites Indicates a Long Lasting Benthic Impact With Minimal Recovery
inferredcites →https://doi.org/10.3389/fmicb.2019.00659openalex-snapshot
The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions
inferredcites →https://doi.org/10.3389/fmicb.2019.00849openalex-snapshot
The Biogeochemical Sulfur Cycle of Marine Sediments
inferredcites →https://doi.org/10.3389/fmicb.2019.02083openalex-snapshot
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes
inferredcites →https://doi.org/10.3390/md18050252openalex-snapshot
Biochemical and Genomic Characterization of the Cypermethrin-Degrading and Biosurfactant-Producing Bacterial Strains Isolated from Marine Sediments of the Chilean Northern Patagonia
inferredcites →https://doi.org/10.4067/s0717-65382010000200006openalex-snapshot
16S rRNA gene-based molecular analysis of mat-forming and accompanying bacteria covering organically-enriched marine sediments underlying a salmon farm in Southern Chile (Calbuco Island)
inferredcites →https://doi.org/10.5194/bg-14-683-2017openalex-snapshot
Long-distance electron transport occurs globally in marine sediments

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Application of Multi-Element Isotopes for Assessing Sedimentary Quality within Aquaculture Systems
inferred← citeshttps://doi.org/10.1002/imt2.171openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11356-023-25196-1openalex-snapshot
Microbial community and predictive functionalities associated with the marine sediment of Coastal Gujarat
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2023.115683openalex-snapshot
Descriptive analyses of bacterial communities in marine sediment microcosms spiked with fish wastes, emamectin benzoate, and oxytetracycline
inferred← citeshttps://doi.org/10.1016/j.envpol.2022.119313openalex-snapshot
Associations between bacterial communities and microplastics from surface seawater of the Northern Patagonian area of Chile
inferred← citeshttps://doi.org/10.1016/j.marenvres.2025.107541openalex-snapshot
Application of multi-element isotopes for assessing sedimentary quality within aquaculture systems
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2025.118694openalex-snapshot
Shifts in prokaryotic communities and giant sulphur-oxidising bacteria in response to salmon aquaculture in sub-Antarctic marine sediments
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2026.120020openalex-snapshot
Multi-site investigation of microbial community profiles in mariculture waters and sediments
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.178820openalex-snapshot
Exploring eutrophic effects of marine sediments underneath fish cage farms: Insights from changes in eukaryotic and bacterial communities and volatile organic compounds
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2026.182106openalex-snapshot
Response of marine benthic viral communities to anthropogenic disturbances
inferred← citeshttps://doi.org/10.1139/cjm-2024-0206openalex-snapshot
Influence of aquaculture and genomic surveillance techniques on antimicrobial resistance gene profiles and microbiota detected in marine and freshwater sediments
inferred← citeshttps://doi.org/10.1186/s12866-025-04460-zopenalex-snapshot
Capturing the spatial structure of the benthic microbiome under an intensive aquaculture scenario in Chilean Patagonia
inferred← citeshttps://doi.org/10.1186/s42523-025-00388-xopenalex-snapshot
Interactions between gilthead seabream intestinal transcriptome and microbiota upon Enteromyxum leei infection: a multi–omic approach
inferred← citeshttps://doi.org/10.3389/fmars.2024.1266410openalex-snapshot
Impacts on microbial communities in sediments by aquaculture farming during one salmon cycle
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1020491openalex-snapshot
Spatial co-occurrence patterns of benthic microbial assemblage in response to trace metals in the Atacama Desert Coastline
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1034401openalex-snapshot
Biogeochemical impacts of fish farming on coastal sediments: Insights into the functional role of cable bacteria
inferred← citeshttps://doi.org/10.7717/peerj.13758openalex-snapshot
Full-length 16S rRNA amplicon sequencing reveals the variation of epibiotic microbiota associated with two shrimp species of Alvinocarididae: possibly co-determined by environmental heterogeneity and specific recognition of hosts
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