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Complete genome sequences provide a case study for the evaluation of gene‐tree thinking
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.tim.2008.02.005openalex-snapshot
Lateral gene transfer challenges principles of microbial systematics
inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferredcites →https://doi.org/10.1038/nature02053openalex-snapshot
Genome-scale approaches to resolving incongruence in molecular phylogenies
inferredcites →https://doi.org/10.1073/pnas.0902000106openalex-snapshot
Comparative systems biology across an evolutionary gradient within the Shewanella genus
inferredcites →https://doi.org/10.1080/10635150500354928openalex-snapshot
Inferring Phylogeny Despite Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/btn484openalex-snapshot
BEST: Bayesian estimation of species trees under the coalescent model
inferredcites →https://doi.org/10.1093/molbev/msl170openalex-snapshot
Bayesian Estimation of Concordance among Gene Trees
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040258openalex-snapshot
Sampling properties of DNA sequence data in phylogenetic analysis.
inferredcites →https://doi.org/10.1093/sysbio/38.1.1openalex-snapshot
A Theoretical Study of the Underestimation of Branch Lengths by the Maximum Parsimony Principle
inferredcites →https://doi.org/10.1093/sysbio/38.1.7openalex-snapshot
A Concern for Evidence and a Phylogenetic Hypothesis of Relationships among Epicrates (Boidae, Serpentes)
inferredcites →https://doi.org/10.1093/sysbio/syp054openalex-snapshot
Species Trees from Highly Incongruent Gene Trees in Rice
inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
inferredcites →https://doi.org/10.1099/00207713-47-4-1040openalex-snapshot
Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., Novel Antarctic Species with the Ability To Produce Eicosapentaenoic Acid (20:5 3) and Grow Anaerobically by Dissimilatory Fe(III) Reduction
inferredcites →https://doi.org/10.1111/j.1096-0031.1993.tb00217.xopenalex-snapshot
CLADISTICS: WHAT'S IN A WORD?
inferredcites →https://doi.org/10.1111/j.1096-0031.2008.00217.xopenalex-snapshot
TNT, a free program for phylogenetic analysis
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00282.xopenalex-snapshot
POY version 4: phylogenetic analysis using dynamic homologies
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00549.xopenalex-snapshot
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
inferredcites →https://doi.org/10.1126/science.259.5096.801openalex-snapshot
Mediation of Sulfur Speciation by a Black Sea Facultative Anaerobe
inferredcites →https://doi.org/10.1128/aem.54.6.1472-1480.1988openalex-snapshot
Novel Mode of Microbial Energy Metabolism: Organic Carbon Oxidation Coupled to Dissimilatory Reduction of Iron or Manganese
inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.423openalex-snapshot
GENE TREES, SPECIES TREES, AND SYSTEMATICS: A Cladistic Perspective
inferredcites →https://doi.org/10.1146/annurev.en.10.010165.000525openalex-snapshot
Phylogenetic Systematics
inferredcites →https://doi.org/10.1186/1471-2164-12-237openalex-snapshot
Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae)
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0011147openalex-snapshot
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
inferredcites →https://doi.org/10.2307/2992432openalex-snapshot
A Concern for Evidence and a Phylogenetic Hypothesis of Relationships Among Epicrates (Boidae, Serpentes)
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.3795.5.2zenodo-depositor-declared
A revision of African helmeted terrapins (Testudines: Pelomedusidae: Pelomedusa), with descriptions of six new species
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.07.009openalex-snapshot
Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches
inferred← citeshttps://doi.org/10.1017/cbo9781316338797.011openalex-snapshot
Semaphoronts: the elements of biological systematics
inferred← citeshttps://doi.org/10.1111/cla.12149openalex-snapshot
Phylogenetic analysis of RAD ‐seq data: examining the influence of gene genealogy conflict on analysis of concatenated data
inferred← citeshttps://doi.org/10.14630/000003openalex-snapshot
Utility of transcriptome sequencing for phylogenetic inference and character evolution
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