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Anatomy of a cladistic analysis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/bies.200900175openalex-snapshot
Deep homology: A view from systematics
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Homology and the Optimization of DNA Sequence Data
inferredcites →https://doi.org/10.1006/clad.2001.0174openalex-snapshot
Majority Does Not Rule: The Trouble with Majority-Rule Consensus Trees
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Foundations of Systematics and Biogeography
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Knowledge Representation and Reasoning
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Foundations of Biophilosophy
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On the Current Status of the Issue of Scientific Realism
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On the current status of the issue of scientific realism
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The future role of bio-ontologies for developing a general data standard in biology: chance and challenge for zoo-morphology
inferredcites →https://doi.org/10.1007/s10441-008-9056-7openalex-snapshot
Natural Kinds in Evolution and Systematics: Metaphysical and Epistemological Considerations
inferredcites →https://doi.org/10.1007/s10441-008-9064-7openalex-snapshot
Character Analysis in Cladistics: Abstraction, Reification, and the Search for Objectivity
inferredcites →https://doi.org/10.1007/s10441-009-9083-zopenalex-snapshot
Pattern Cladistics and the ‘Realism–Antirealism Debate’ in the Philosophy of Biology
inferredcites →https://doi.org/10.1007/s10539-004-0757-2openalex-snapshot
Outline of an Explanatory Account of Cladistic Practice
inferredcites →https://doi.org/10.1007/s10539-006-9024-zopenalex-snapshot
The Poverty of Taxonomic Characters
inferredcites →https://doi.org/10.1007/s10539-006-9026-xopenalex-snapshot
Parsimony, likelihood, and instrumentalism in systematics
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‘Total evidence’ in phylogenetic systematics
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Key Innovations: Further Remarks on the Importance of Morphology in Elucidating Systematic Relationships and Adaptive Radiations
inferredcites →https://doi.org/10.1016/b978-012618030-5/50007-1openalex-snapshot
BEHAVIORAL CHARACTERS AND HOMOPLASY: PERCEPTION VERSUS PRACTICE
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Knowledge representation and reasoning
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From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies
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Time to change how we describe biodiversity
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Phenotype ontologies: are homology relations central enough? A reply to Deans et al.
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Handbook of Knowledge Representation
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The ‘corroboration’ of theories
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Species, Demes, and the Omega Taxonomy: Gilmour and The NewSystematics
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Reconstructing the past: Some cognitive consequences of person perception.
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Semaphoronts, cladograms and the roots of total evidence
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Classifications and other ordering systems
inferredcites →https://doi.org/10.1071/is11033openalex-snapshot
Phylogenetic assessment of the Caribbean weevil genus Lachnopus Schoenherr (Coleoptera : Curculionidae : Entiminae)
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Evolutionary phenomics and the emerging enlightenment of arthropod systematics
inferredcites →https://doi.org/10.1080/00222930903383495openalex-snapshot
Redescriptions of critical type species in the Eustylini Lacordaire (Coleoptera: Curculionidae: Entiminae)
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XLVII.—A key to the genera ofBrachyderinæof the World
inferredcites →https://doi.org/10.1080/00222934408527456openalex-snapshot
L.—A key to the genera of Brachyderinæ of the World
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Observations on the morphology and classification of weevils (Coleoptera, Curculionoidea) with a key to major groups
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Fragmentary Taxa, Missing Data, and Ambiguity: Mistaken Assumptions and Conclusions
inferredcites →https://doi.org/10.1080/10635150290102302openalex-snapshot
The Utility of the Incongruence Length Difference Test
inferredcites →https://doi.org/10.1080/10635150390223613openalex-snapshot
Phylogeny Reconstruction: The Role of Morphology
inferredcites →https://doi.org/10.1080/10635150390223730openalex-snapshot
Stability in Phylogenetic Formulations and Its Relationship to Nodal Support
inferredcites →https://doi.org/10.1080/10635150490264752openalex-snapshot
Congruence Versus Phylogenetic Accuracy: Revisiting the Incongruence Length Difference Test
inferredcites →https://doi.org/10.1080/10635150600697416openalex-snapshot
Reciprocal Illumination in the Gene Content Tree of Life
inferredcites →https://doi.org/10.1080/10635150701313848openalex-snapshot
Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology
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Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies
inferredcites →https://doi.org/10.1086/375467openalex-snapshot
Character Individuation in Phylogenetic Inference
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Parsimony, Phylogeny, and Genomics
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The logic of the data matrix in phylogenetic analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btq283openalex-snapshot
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy
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vHOG, a multispecies vertebrate ontology of homologous organs groups
inferredcites →https://doi.org/10.1093/sysbio/21.4.390openalex-snapshot
Consensus Techniques and the Comparison of Taxonomic Trees
inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot
Cases in which Parsimony or Compatibility Methods will be Positively Misleading
inferredcites →https://doi.org/10.1093/sysbio/42.4.576openalex-snapshot
Missing Data Versus Missing Characters in Phylogenetic Analysis
inferredcites →https://doi.org/10.1093/sysbio/44.4.501openalex-snapshot
Coping with Abundant Missing Entries in Phylogenetic Inference Using Parsimony
inferredcites →https://doi.org/10.1093/sysbio/46.2.358openalex-snapshot
The Data, the Matrix, and the Message: Comments on Begle's "Relationships of the Osmeroid Fishes"
inferredcites →https://doi.org/10.1093/sysbio/syq013openalex-snapshot
The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age
inferredcites →https://doi.org/10.1098/rstb.2003.1452openalex-snapshot
Taxonomic triage and the poverty of phylogeny
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The scientific status of metazoan cladistics: why current research practice must change
inferredcites →https://doi.org/10.1111/j.1095-8312.2007.00847.xopenalex-snapshot
The performance of morphological characters in broad-scale phylogenetic analyses
inferredcites →https://doi.org/10.1111/j.1096-0031.1990.tb00533.xopenalex-snapshot
EVOLUTIONARY CHARACTER ANALYSIS: TRACING CHARACTER CHANGE ON A CLADOGRAM
inferredcites →https://doi.org/10.1111/j.1096-0031.1990.tb00549.xopenalex-snapshot
CHARACTER DEFINITIONS AND CHARACTER STATE DELINEATION: THE BETE NOIRE OF PHYLOGENETIC INFERENCE
inferredcites →https://doi.org/10.1111/j.1096-0031.1991.tb00045.xopenalex-snapshot
CONCEPTS AND TESTS OF HOMOLOGY IN THE CLADISTIC PARADIGM
inferredcites →https://doi.org/10.1111/j.1096-0031.1994.tb00179.xopenalex-snapshot
BRANCH SUPPORT AND TREE STABILITY
inferredcites →https://doi.org/10.1111/j.1096-0031.1994.tb00181.xopenalex-snapshot
TESTING SIGNIFICANCE OF INCONGRUENCE
inferredcites →https://doi.org/10.1111/j.1096-0031.1996.tb00017.xopenalex-snapshot
ON CONSENSUS, COLLAPSIBILITY, AND CLADE CONCORDANCE
inferredcites →https://doi.org/10.1111/j.1096-0031.1999.tb00272.xopenalex-snapshot
Character Coding and Inapplicable Data
inferredcites →https://doi.org/10.1111/j.1096-0031.1999.tb00277.xopenalex-snapshot
The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis
inferredcites →https://doi.org/10.1111/j.1096-0031.2001.tb00100.xopenalex-snapshot
Homology and the Optimization of DNA Sequence Data
inferredcites →https://doi.org/10.1111/j.1096-0031.2003.tb00311.xopenalex-snapshot
Data exploration in phylogenetic inference: scientific, heuristic, or neither
inferredcites →https://doi.org/10.1111/j.1096-0031.2005.00080.xopenalex-snapshot
On the lack of good scientific reasons for the growing phylogeny/classification gap
inferredcites →https://doi.org/10.1111/j.1096-0031.2006.00106.xopenalex-snapshot
Further problems with the incongruence length difference test: “hypercongruence” effect and multiple comparisons
inferredcites →https://doi.org/10.1111/j.1096-0031.2006.00110.xopenalex-snapshot
Rejecting “the given” in systematics
inferredcites →https://doi.org/10.1111/j.1096-0031.2006.00122.xopenalex-snapshot
Continuous characters analyzed as such
inferredcites →https://doi.org/10.1111/j.1096-0031.2007.00161.xopenalex-snapshot
Logical basis for morphological characters in phylogenetics
inferredcites →https://doi.org/10.1111/j.1096-0031.2007.00162.xopenalex-snapshot
Homology as a parsimony problem: a dynamic homology approach for morphological data
inferredcites →https://doi.org/10.1111/j.1096-0031.2007.00173.xopenalex-snapshot
Phylogenetic placement of the Tasmanian spider Acrobleps hygrophilus (Araneae, Anapidae) with comments on the evolution of the capture web in Araneoidea
inferredcites →https://doi.org/10.1111/j.1096-0031.2008.00209.xopenalex-snapshot
Weighting against homoplasy improves phylogenetic analysis of morphological data sets
inferredcites →https://doi.org/10.1111/j.1096-0031.2008.00229.xopenalex-snapshot
Is ACCTRAN better than DELTRAN?
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00258.xopenalex-snapshot
Unstable taxa in cladistic analysis: identification and the assessment of relevant characters
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00261.xopenalex-snapshot
Coherence, correspondence, and the renaissance of morphology in phylogenetic systematics
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00265.xopenalex-snapshot
Comparative cladistics
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00273.xopenalex-snapshot
Comparison of phylogenetic signal between male genitalia and non‐genital characters in insect systematics
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00286.xopenalex-snapshot
The linguistic problem of morphology: structure versus homology and the standardization of morphological data
inferredcites →https://doi.org/10.1111/j.1096-0031.2010.00302.xopenalex-snapshot
Phylogenetic morphometrics (I): the use of landmark data in a phylogenetic framework
inferredcites →https://doi.org/10.1111/j.1096-3642.2010.00619.xopenalex-snapshot
Delimiting baridine weevil evolution (Coleoptera: Curculionidae: Baridinae)
inferredcites →https://doi.org/10.1111/j.1096-3642.2011.00774.xopenalex-snapshot
Phylogenetic reassessment of the Exophthalmus genus complex (Curculionidae: Entiminae: Eustylini, Geonemini)
inferredcites →https://doi.org/10.1111/j.1365-3113.2005.00308.xopenalex-snapshot
Towards a phylogenetic system of derelomine flower weevils (Coleoptera: Curculionidae)
inferredcites →https://doi.org/10.1111/j.1365-3113.2009.00496.xopenalex-snapshot
Are molecular data supplanting morphological data in modern phylogenetic studies?
inferredcites →https://doi.org/10.1111/j.1365-3113.2010.00534.xopenalex-snapshot
Can higher‐level phylogenies of weevils explain their evolutionary success? A critical review
inferredcites →https://doi.org/10.1111/j.1463-6395.2007.00273.xopenalex-snapshot
Foundations of Phylogenetic Systematics
inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.279openalex-snapshot
RATES OF MOLECULAR EVOLUTION: Phylogenetic Issues and Applications
inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150509openalex-snapshot
Troubleshooting Molecular Phylogenetic Analyses
inferredcites →https://doi.org/10.1146/annurev.ecolsys.35.112202.130205openalex-snapshot
Phylogenomics
inferredcites →https://doi.org/10.1146/annurev.en.10.010165.000525openalex-snapshot
Phylogenetic Systematics
inferredcites →https://doi.org/10.1163/187631210x538799openalex-snapshot
Revision, phylogeny and historical biogeography of the genus Apodrosus Marshall, 1922 (Coleoptera: Curculionidae: Entiminae)
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The abduction of phylogenetic hypotheses
inferredcites →https://doi.org/10.11646/zootaxa.1668.1.24openalex-snapshot
Weevils, weevils, weevils everywhere*
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Phylogenies without Synapomorphies—A Crisis in Fish Systematics: Time to Show Some Character
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Uberon, an integrative multi-species anatomy ontology
inferredcites →https://doi.org/10.1371/journal.pbio.1000602openalex-snapshot
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
inferredcites →https://doi.org/10.1371/journal.pone.0010500openalex-snapshot
Phenex: Ontological Annotation of Phenotypic Diversity
inferredcites →https://doi.org/10.1371/journal.pone.0010708openalex-snapshot
Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature
inferredcites →https://doi.org/10.1371/journal.pone.0012258openalex-snapshot
Adding a Little Reality to Building Ontologies for Biology
inferredcites →https://doi.org/10.1371/journal.pone.0015991openalex-snapshot
A Gross Anatomy Ontology for Hymenoptera
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Weevils, weevils, weevils
inferredcites →https://doi.org/10.1671/0272-4634(2003)023[0297:iticap]2.0.co;2openalex-snapshot
Incomplete taxa, incomplete characters, and phylogenetic accuracy: is there a missing data problem?
inferredcites →https://doi.org/10.17161/bi.v7i1.3927openalex-snapshot
BIOLOGICAL TAXONOMY AND ONTOLOGY DEVELOPMENT: SCOPE AND LIMITATIONS
inferredcites →https://doi.org/10.2307/2412432openalex-snapshot
Consensus Techniques and the Comparison of Taxonomic Trees
inferredcites →https://doi.org/10.2307/2412923openalex-snapshot
Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
inferredcites →https://doi.org/10.2307/2532170openalex-snapshot
Reconstructing the Past: Parsimony, Evolution, and Inference.
inferredcites →https://doi.org/10.2307/2992293openalex-snapshot
Reconstructing the Past: Parsimony, Evolution, and Inference.
inferredcites →https://doi.org/10.3233/ao-2010-0076openalex-snapshot
Ontological realism: Methodology or misdirection?
inferredcites →https://doi.org/10.3233/ao-2010-0079openalex-snapshot
Ontological realism: A methodology for coordinated evolution of scientific ontologies
inferredcites →https://doi.org/10.3233/ao-2010-0080openalex-snapshot
Realism and reference ontologies: Considerations, reflections and problems
inferredcites →https://doi.org/10.3897/jhr.27.2961openalex-snapshot
A hymenopterists’ guide to the Hymenoptera Anatomy Ontology: utility, clarification, and future directions
inferredcites →https://doi.org/10.3897/zookeys.49.303openalex-snapshot
Revision and phylogeny of the Caribbean weevil genus Apotomoderes Dejean, 1834 (Coleoptera, Curculionidae, Entiminae)
inferredcites →https://doi.org/10.3897/zookeys.88.807openalex-snapshot
Family-Group Names In Coleoptera (Insecta)
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Miscellaneous contributions to the knowledge of the weevils of the families Attelabidae and Brachyrhinidae
inferredcites →https://doi.org/10.5962/bhl.title.14604openalex-snapshot
The Rhynchophora of America north of Mexico
inferredcites →https://doi.org/10.5962/bhl.title.67686openalex-snapshot
Histoire naturelle des insectes : genera des coleopteres, ou expose methodique et critique de tous les genres proposes jusqu'ici dans cet ordre d'insects /
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.5852/ejt.2026.1091.3322zenodo-depositor-declared
A revision of the weevil genus Urometopus Formánek, 1904 (Coleoptera: Curculionidae: Entiminae) with descriptions of thirty-two new species
inferred← citeshttps://doi.org/10.1007/s10531-018-1573-3openalex-snapshot
Revisiting the Darwinian shortfall in biodiversity conservation
inferred← citeshttps://doi.org/10.1080/14772000.2013.806371openalex-snapshot
Description of two new species and phylogenetic reassessment ofPerelleschusO’Brien & Wibmer, 1986 (Coleoptera: Curculionidae), with a complete taxonomic concept history ofPerelleschussec. Franz & Cardona-Duque, 2013
inferred← citeshttps://doi.org/10.1080/14772000.2017.1279693openalex-snapshot
The jazz of cladistics*
inferred← citeshttps://doi.org/10.1093/biolinnean/blz205openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/sysbio/syw023openalex-snapshot
Two Influential Primate Classifications Logically Aligned
inferred← citeshttps://doi.org/10.1093/sysbio/syw108openalex-snapshot
The first organ-based free ontology for arthropods (Ontology of Arthropod Circulatory Systems - OArCS) and its integration into a novel formalization scheme for morphological descriptions
inferred← citeshttps://doi.org/10.1093/sysbio/syz013openalex-snapshot
The Search for Common Origin: Homology Revisited
inferred← citeshttps://doi.org/10.1093/zoolinnean/zly033openalex-snapshot
Molecular phylogeny of Pedinini (Coleoptera, Tenebrionidae) and its implications for higher-level classification
inferred← citeshttps://doi.org/10.1111/cla.12075openalex-snapshot
Calculating structural complexity in phylogenies using ancestral ontologies
inferred← citeshttps://doi.org/10.1111/cla.12179openalex-snapshot
Assessing similarity: on homology, characters and the need for a semantic approach to non‐evolutionary comparative homology
inferred← citeshttps://doi.org/10.1111/jse.12241openalex-snapshot
Patterns of character evolution in phylogenies
inferred← citeshttps://doi.org/10.1111/zoj.12263openalex-snapshot
Phylogenetic reassessment and biogeography of theEctateusgeneric group (Coleoptera: Tenebrionidae: Platynotina)
inferred← citeshttps://doi.org/10.1186/s13326-022-00268-2openalex-snapshot
Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006493openalex-snapshot
Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion
inferred← citeshttps://doi.org/10.3233/978-1-61499-854-9-53openalex-snapshot
Taxonomy and the Production of Semantic Phenotypes
inferred← citeshttps://doi.org/10.3233/sw-160220openalex-snapshot
Names are not good enough: Reasoning over taxonomic change in the Andropogon complex1
inferred← citeshttps://doi.org/10.3390/d10030064openalex-snapshot
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inferred← citeshttps://doi.org/10.3897/bdj.5.e10469openalex-snapshot
Three new species of entimine weevils in Early Miocene amber from the Dominican Republic (Coleoptera: Curculionidae)
inferred← citeshttps://doi.org/10.3897/zookeys.528.6001openalex-snapshot
Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments
inferred← citeshttps://doi.org/10.4202/app.00113.2014openalex-snapshot
Analyzing the impact of conflictive dental characters on the phylogeny of octodontoid rodents
inferred← citeshttps://doi.org/10.48580/d3hsropenalex-snapshot
Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments
inferred← citeshttps://doi.org/10.6084/m9.figshare.20167827openalex-snapshot
Additional file 1 of Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research
inferred← citeshttps://doi.org/10.7287/peerj.5633v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Descriptions of four new species of Minyomerus Horn, 1876 sec. Jansen & Franz, 2018 (Coleoptera: Curculionidae), with notes on their distribution and phylogeny (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.10191openalex-snapshot
Systematic revision of the genusIsodacrysSharp, 1911 (Coleoptera: Curculionidae: Entiminae: Tanymecini)
inferred← citeshttps://doi.org/10.7717/peerj.5633openalex-snapshot
Descriptions of four new species of Minyomerus Horn, 1876 sec. Jansen & Franz, 2018 (Coleoptera: Curculionidae), with notes on their distribution and phylogeny
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
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