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POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Systematics: A Course of Lectures
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OPTIMIZATION ALIGNMENT: THE END OF MULTIPLE SEQUENCE ALIGNMENT IN PHYLOGENETICS?
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Fixed Character States and the Optimization of Molecular Sequence Data
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Phylogenetic Relationships of Platyhelminthes Based on 18S Ribosomal Gene Sequences
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The Position of Arthropods in the Animal Kingdom: Ecdysozoa, Islands, Trees, and the “Parsimony Ratchet”
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
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Probability Distribution of Molecular Evolutionary Trees: A New Method of Phylogenetic Inference
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Comparison of phylogenetic trees
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MOLECULAR STUDIES OF EVOLUTION: A SOURCE OF NOVEL STATISTICAL PROBLEMS**This investigation was supported in part by research grant GM 10525-08 from the National Institutes of Health, Public Health Service.
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Mammalian Protein Metabolism
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Evolution of Protein Molecules
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Postglacial connection of the Black Sea to the Mediterranean and its relation to the timing of sapropel formation
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RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
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Parsimony, Likelihood, and the Role of Models in Molecular Phylogenetics
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Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.
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A Concern for Evidence and a Phylogenetic Hypothesis of Relationships among Epicrates (Boidae, Serpentes)
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Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
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A new look at the statistical model identification
inferredcites →https://doi.org/10.1111/cla.12046openalex-snapshot
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Historical linguistics as a sequence optimization problem: the evolution and biogeography of U to‐ A ztecan languages
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Dynamic homology and the likelihood criterion
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Phylogeny of the sea spiders (Arthropoda, Pycnogonida) based on direct optimization of six loci and morphology
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00282.xopenalex-snapshot
POY version 4: phylogenetic analysis using dynamic homologies
inferredcites →https://doi.org/10.1111/j.1096-0031.2012.00402.xopenalex-snapshot
Indel information eliminates trivial sequence alignment in maximum likelihood phylogenetic analysis
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Comparative and phylogenetic analysis of developmental sequences
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DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION
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Some Unusual Small-Subunit Ribosomal RNA Sequences of Metazoans
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Minimum Distance Estimation in an Additive Effects Outliers Model
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Statistical Analysis of Hominoid Molecular Evolution
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A Concern for Evidence and a Phylogenetic Hypothesis of Relationships Among Epicrates (Boidae, Serpentes)
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