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Missing data, clade support and “reticulation”: the molecular systematics of Heliconius and related genera (Lepidoptera: Nymphalidae) re‐examined

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.201500149openalex-snapshot
How reticulated are species?
inferredcites →https://doi.org/10.1006/bijl.1996.0101openalex-snapshot
Phylogeny of the neotropical moth tribe Josiini (Notodontidae: Dioptinae): comparing and combining evidence from DNA sequences and morphology
inferredcites →https://doi.org/10.1006/clad.1996.0016openalex-snapshot
ON SIMULTANEOUS ANALYSIS
inferredcites →https://doi.org/10.1006/clad.1999.0129openalex-snapshot
Evolution Is Not a Necessary Assumption of Cladistics
inferredcites →https://doi.org/10.1006/mpev.1994.1018openalex-snapshot
Phylogeny of Heliconius Butterflies Inferred from Mitochondrial DNA Sequences (Lepidoptera: Nymphalidae)
inferredcites →https://doi.org/10.1007/s10709-010-9530-4openalex-snapshot
Hybrid speciation in Heliconius butterflies? A review and critique of the evidence
inferredcites →https://doi.org/10.1016/0169-5347(96)10006-9openalex-snapshot
Combining data in phylogenetic analysis
inferredcites →https://doi.org/10.1016/0169-5347(96)81133-5openalex-snapshot
Combining data in phylogenetic analysis
inferredcites →https://doi.org/10.1016/0169-5347(96)81134-7openalex-snapshot
Combining data in phylogenic analysis
inferredcites →https://doi.org/10.1016/j.ympev.2014.06.002openalex-snapshot
Dubious resolution and support from published sparse supermatrices: The importance of thorough tree searches
inferredcites →https://doi.org/10.1016/j.ympev.2014.08.013openalex-snapshot
Phylogenetic analysis at deep timescales: Unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum
inferredcites →https://doi.org/10.1016/j.ympev.2015.05.011openalex-snapshot
Coalescence vs. concatenation: Sophisticated analyses vs. first principles applied to rooting the angiosperms
inferredcites →https://doi.org/10.1016/j.ympev.2015.07.018openalex-snapshot
The gene tree delusion
inferredcites →https://doi.org/10.1016/j.ympev.2015.10.027openalex-snapshot
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
inferredcites →https://doi.org/10.1016/j.ympev.2016.07.019openalex-snapshot
A test of color-based taxonomy in nudibranchs: Molecular phylogeny and species delimitation of the Felimida clenchi (Mollusca: Chromodorididae) species complex
inferredcites →https://doi.org/10.1016/s0748-3007(03)00067-7openalex-snapshot
From basepairs to birdsongs: phylogenetic data in the age of genomics
inferredcites →https://doi.org/10.1038/nature04738openalex-snapshot
Speciation by hybridization in Heliconius butterflies
inferredcites →https://doi.org/10.1046/j.1365-2583.1998.71046.xopenalex-snapshot
Ikirara , a novel transposon family from the malaria vector mosquito, Anopheles gambiae
inferredcites →https://doi.org/10.1046/j.1365-2583.1998.71052.xopenalex-snapshot
Patterns of mitochondrial versus nuclear DNA sequence divergence among nymphalid butterflies: the utility of wingless as a source of characters for phylogenetic inference
inferredcites →https://doi.org/10.1080/03745484009443283openalex-snapshot
XXIII.—On the true Method of discovering the Natural System in Zoology and Botany
inferredcites →https://doi.org/10.1080/10635150252899824openalex-snapshot
Fragmentary Taxa, Missing Data, and Ambiguity: Mistaken Assumptions and Conclusions
inferredcites →https://doi.org/10.1080/10635150390218330openalex-snapshot
Missing Data, Incomplete Taxa, and Phylogenetic Accuracy
inferredcites →https://doi.org/10.1080/10635150801910436openalex-snapshot
Testing Congruence in Phylogenomic Analysis
inferredcites →https://doi.org/10.1080/106351598260635openalex-snapshot
Does Adding Characters with Missing Data Increase or Decrease Phylogenetic Accuracy?
inferredcites →https://doi.org/10.1080/14772000.2014.899650openalex-snapshot
Phylogenetic relationships of ithomiine butterflies (Lepidoptera: Nymphalidae: Danainae) as implied by combined morphological and molecular data
inferredcites →https://doi.org/10.1080/14772001003626814openalex-snapshot
Phylogenetic relationships among genera of danaine butterflies (Lepidoptera: Nymphalidae) as implied by morphology and DNA sequences
inferredcites →https://doi.org/10.1093/molbev/msh182openalex-snapshot
Phylogenomics of Eukaryotes: Impact of Missing Data on Large Alignments
inferredcites →https://doi.org/10.1093/molbev/msv266openalex-snapshot
The Impact of Missing Data on Species Tree Estimation
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot
Relationships between gene trees and species trees.
inferredcites →https://doi.org/10.1093/sysbio/30.3.351openalex-snapshot
The Implications of Congruence in Menidia
inferredcites →https://doi.org/10.1093/sysbio/38.1.7openalex-snapshot
A Concern for Evidence and a Phylogenetic Hypothesis of Relationships among Epicrates (Boidae, Serpentes)
inferredcites →https://doi.org/10.1093/sysbio/44.4.501openalex-snapshot
Coping with Abundant Missing Entries in Phylogenetic Inference Using Parsimony
inferredcites →https://doi.org/10.1093/sysbio/46.3.523openalex-snapshot
Gene Trees in Species Trees
inferredcites →https://doi.org/10.1093/sysbio/46.4.654openalex-snapshot
Multiple Sources of Character Information and the Phylogeny of Hawaiian Drosophilids
inferredcites →https://doi.org/10.1093/sysbio/46.4.751openalex-snapshot
Process Partitions, Congruence, and the Independence of Characters: Inferring Relationships among Closely Related Hawaiian Drosophila from Multiple Gene Regions
inferredcites →https://doi.org/10.1093/sysbio/syp017openalex-snapshot
The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference
inferredcites →https://doi.org/10.1093/sysbio/syr016openalex-snapshot
Estimating Species Trees: Practical and Theoretical Aspects
inferredcites →https://doi.org/10.1093/sysbio/syv007openalex-snapshot
Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies
inferredcites →https://doi.org/10.1093/sysbio/syv058openalex-snapshot
How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards
inferredcites →https://doi.org/10.1098/rspb.1997.0134openalex-snapshot
Cladistic analysis of Heliconius butterflies and relatives (Nymphalidae: Heliconiiti): a revised phylogenetic position for Eueides based on sequences from mtDNA and a nuclear gene
inferredcites →https://doi.org/10.1098/rspb.2012.2302openalex-snapshot
Introgression of wing pattern alleles and speciation via homoploid hybridization inHeliconiusbutterflies: a review of evidence from the genome
inferredcites →https://doi.org/10.1111/evo.12999openalex-snapshot
Phylogenetic incongruence and the evolutionary origins of cardenolide-resistant forms of Na + ,K + -ATPase in Danaus butterflies
inferredcites →https://doi.org/10.1111/j.1095-8312.2007.00830.xopenalex-snapshot
Do pollen feeding, pupal-mating and larval gregariousness have a single origin in Heliconius butterflies? Inferences from multilocus DNA sequence data
inferredcites →https://doi.org/10.1111/j.1096-0031.1988.tb00514.xopenalex-snapshot
AMNIOTE PHYLOGENY AND THE IMPORTANCE OF FOSSILS
inferredcites →https://doi.org/10.1111/j.1096-0031.1994.tb00179.xopenalex-snapshot
BRANCH SUPPORT AND TREE STABILITY
inferredcites →https://doi.org/10.1111/j.1096-0031.1994.tb00181.xopenalex-snapshot
TESTING SIGNIFICANCE OF INCONGRUENCE
inferredcites →https://doi.org/10.1111/j.1096-0031.1999.tb00277.xopenalex-snapshot
The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis
inferredcites →https://doi.org/10.1111/j.1096-0031.2003.tb00297.xopenalex-snapshot
Parsimony, likelihood, and simplicity
inferredcites →https://doi.org/10.1111/j.1096-0031.2006.00113.xopenalex-snapshot
The how and why of branch support and partitioned branch support, with a new index to assess partition incongruence
inferredcites →https://doi.org/10.1111/j.1096-0031.2008.00217.xopenalex-snapshot
TNT, a free program for phylogenetic analysis
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00271.xopenalex-snapshot
Stability, replication, pseudoreplication and support
inferredcites →https://doi.org/10.1111/j.1096-0031.2010.00342.xopenalex-snapshot
Do model-based phylogenetic analyses perform better than parsimony? A test with empirical data
inferredcites →https://doi.org/10.1111/j.1096-0031.2011.00375.xopenalex-snapshot
Misleading results of likelihood‐based phylogenetic analyses in the presence of missing data
inferredcites →https://doi.org/10.1111/j.1096-3642.1999.tb00680.xopenalex-snapshot
Higher level phylogeny for the passion-vine butterflies (Nymphalidae, Heliconiinae) based on early stage and adult morphology
inferredcites →https://doi.org/10.1111/j.1365-3113.2006.00321.xopenalex-snapshot
Phylogenetic relationships among the Ithomiini (Lepidoptera: Nymphalidae) inferred from one mitochondrial and two nuclear gene regions
inferredcites →https://doi.org/10.1111/j.1558-5646.1988.tb02497.xopenalex-snapshot
THE LIMITS OF AMINO ACID SEQUENCE DATA IN ANGIOSPERM PHYLOGENETIC RECONSTRUCTION
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00549.xopenalex-snapshot
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
inferredcites →https://doi.org/10.1111/jeb.12672openalex-snapshot
The diversification of Heliconius butterflies: what have we learned in 150 years?
inferredcites →https://doi.org/10.1111/syen.12194openalex-snapshot
Putting Parasemia in its phylogenetic place: a molecular analysis of the subtribe Arctiina (Lepidoptera)
inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.423openalex-snapshot
GENE TREES, SPECIES TREES, AND SYSTEMATICS: A Cladistic Perspective
inferredcites →https://doi.org/10.1146/annurev.en.10.010165.000525openalex-snapshot
Phylogenetic Systematics
inferredcites →https://doi.org/10.1146/annurev.en.26.010181.002235openalex-snapshot
The Biology of Heliconius and Related Genera
inferredcites →https://doi.org/10.1146/annurev.ento.45.1.1openalex-snapshot
The Current State Of Insect Molecular Systematics: A Thriving Tower of Babel
inferredcites →https://doi.org/10.1163/187631206788831407openalex-snapshot
Morphology, molecules and fritillaries: approaching a stable phylogeny for Argynnini (Lepidoptera: Nymphalidae)
inferredcites →https://doi.org/10.1186/1471-2148-7-28openalex-snapshot
Natural hybridization in heliconiine butterflies: the species boundary as a continuum
inferredcites →https://doi.org/10.1186/s13059-016-0889-0openalex-snapshot
Genome-wide introgression among distantly related Heliconius butterfly species
inferredcites →https://doi.org/10.1371/journal.pbio.1002353openalex-snapshot
Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling
inferredcites →https://doi.org/10.1371/journal.pone.0042925openalex-snapshot
Highly Incomplete Taxa Can Rescue Phylogenetic Analyses from the Negative Impacts of Limited Taxon Sampling
inferredcites →https://doi.org/10.1371/journal.pone.0156600openalex-snapshot
Subspecific Differentiation Events of Montane Stag Beetles (Coleoptera, Lucanidae) Endemic to Formosa Island
inferredcites →https://doi.org/10.2307/2413255openalex-snapshot
The Implications of Congruence in Menidia
inferredcites →https://doi.org/10.2307/2992432openalex-snapshot
A Concern for Evidence and a Phylogenetic Hypothesis of Relationships Among Epicrates (Boidae, Serpentes)
inferredcites →https://doi.org/10.3897/asp.68.e31707openalex-snapshot
Simultaneous analysis and the origin of eusociality in the Vespidae (Insecta: Hymenoptera)
inferredcites →https://doi.org/10.5860/choice.41-2175openalex-snapshot
Butterflies: ecology and evolution taking flight
inferredcites →https://doi.org/10.5962/p.203277openalex-snapshot
Speciation in Heliconius (Lep., Nymphalidae): Morphology and geographic distribution
inferredcites →https://doi.org/10.7208/9780226063195-017openalex-snapshot
Adaptive Novelty through Introgression in Heliconius Wing Patterns: Evidence for a Shared Genetic “Toolbox” from Synthetic Hybrid Zones and a Theory of Diversification

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.4499.1.1zenodo-depositor-declared
Alternative facts: a reconsideration of putatively natural interspecific hybrid specimens in the genus Heliconius (Lepidoptera: Nymphalidae)
inferred← citeshttps://doi.org/10.1002/ece3.3729openalex-snapshot
Quantified reproductive isolation inHeliconiusbutterflies: Implications for introgression and hybrid speciation
inferred← citeshttps://doi.org/10.1016/b978-0-12-822562-2.00146-8openalex-snapshot
Cladistics
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.06.013openalex-snapshot
Phylogenomic analysis supports multiple instances of polyphyly in the oomycete peronosporalean lineage
inferred← citeshttps://doi.org/10.1080/14772000.2018.1476417openalex-snapshot
Paradigms and paradoxes of Heliconius butterflies
inferred← citeshttps://doi.org/10.1093/gbe/evab099openalex-snapshot
Rampant Genome-Wide Admixture across theHeliconiusRadiation
inferred← citeshttps://doi.org/10.1101/414201openalex-snapshot
Genome-wide admixture is common across the Heliconius radiation
inferred← citeshttps://doi.org/10.1111/cla.12211openalex-snapshot
Going rogue
inferred← citeshttps://doi.org/10.1111/cla.12356openalex-snapshot
“Maximum support” = 100% BS
inferred← citeshttps://doi.org/10.1111/cla.12509openalex-snapshot
Intersubjective Corroboration
inferred← citeshttps://doi.org/10.1111/syen.12339openalex-snapshot
Evolution of green lacewings (Neuroptera: Chrysopidae): a molecular supermatrix approach
inferred← citeshttps://doi.org/10.1111/syen.70024openalex-snapshot
Over‐reliance on Completeness exposes ultraconserved elements datasets to non‐randomly distributed missing data
inferred← citeshttps://doi.org/10.1126/science.aaw2090openalex-snapshot
Genomic architecture and introgression shape a butterfly radiation
inferred← citeshttps://doi.org/10.1126/science.aaz1576openalex-snapshot
Mapping footprints of past genetic exchange
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