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EcologicalNetworks.jl: analysing ecological networks of species interactions

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Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.tim.2012.11.003openalex-snapshot
Phage–bacteria infection networks
inferredcites →https://doi.org/10.1016/s0097-8485(01)00073-0openalex-snapshot
Information theory in ecology
inferredcites →https://doi.org/10.1038/nature03288openalex-snapshot
Functional cartography of complex metabolic networks
inferredcites →https://doi.org/10.1038/nature07950openalex-snapshot
The architecture of mutualistic networks minimizes competition and increases biodiversity
inferredcites →https://doi.org/10.1038/srep45908openalex-snapshot
Linear filtering reveals false negatives in species interaction data
inferredcites →https://doi.org/10.1046/j.1365-2656.2003.00710.xopenalex-snapshot
Measuring beta diversity for presence–absence data
inferredcites →https://doi.org/10.1073/pnas.0706375104openalex-snapshot
The modularity of pollination networks
inferredcites →https://doi.org/10.1073/pnas.1633576100openalex-snapshot
The nested assembly of plant–animal mutualistic networks
inferredcites →https://doi.org/10.1086/674445openalex-snapshot
A Tale of Two Phylogenies: Comparative Analyses of Ecological Interactions
inferredcites →https://doi.org/10.1098/rspb.2004.2909openalex-snapshot
Tolerance of pollination networks to species extinctions
inferredcites →https://doi.org/10.1101/302356openalex-snapshot
bmotif: a package for motif analyses of bipartite networks
inferredcites →https://doi.org/10.1101/364703openalex-snapshot
pymfinder: a tool for the motif analysis of binary and quantitative complex networks
inferredcites →https://doi.org/10.1103/physreve.76.066102openalex-snapshot
Modularity and community detection in bipartite networks
inferredcites →https://doi.org/10.1109/wi-iat.2009.15openalex-snapshot
Community Detection in Large-Scale Bipartite Networks
inferredcites →https://doi.org/10.1111/1365-2435.12763openalex-snapshot
Sampling networks of ecological interactions
inferredcites →https://doi.org/10.1111/1365-2435.12799openalex-snapshot
Describe, understand and predict: why do we need networks in ecology?
inferredcites →https://doi.org/10.1111/2041-210x.12282openalex-snapshot
enaR: An r package for Ecosystem Network Analysis
inferredcites →https://doi.org/10.1111/2041-210x.12458openalex-snapshot
BiMat: a MATLAB package to facilitate the analysis of bipartite networks
inferredcites →https://doi.org/10.1111/2041-210x.12468openalex-snapshot
The structure of probabilistic networks
inferredcites →https://doi.org/10.1111/brv.12366openalex-snapshot
Comparing species interaction networks along environmental gradients
inferredcites →https://doi.org/10.1111/brv.12433openalex-snapshot
Analysing ecological networks of species interactions
inferredcites →https://doi.org/10.1111/ecog.00913openalex-snapshot
Species’ roles in food webs show fidelity across a highly variable oak forest
inferredcites →https://doi.org/10.1111/ele.12002openalex-snapshot
The dissimilarity of species interaction networks
inferredcites →https://doi.org/10.1111/j.1365-2656.2010.01688.xopenalex-snapshot
Nestedness versus modularity in ecological networks: two sides of the same coin?
inferredcites →https://doi.org/10.1111/j.1461-0248.2005.00868.xopenalex-snapshot
Habitat loss and the structure of plant–animal mutualistic networks
inferredcites →https://doi.org/10.1137/141000671openalex-snapshot
Julia: A Fresh Approach to Numerical Computing
inferredcites →https://doi.org/10.1371/journal.pbio.1002559openalex-snapshot
Chasing Ecological Interactions
inferredcites →https://doi.org/10.25080/tcwv9851openalex-snapshot
Exploring Network Structure, Dynamics, and Function using NetworkX

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.5119523zenodo-depositor-declared
inferred← backgroundhttps://doi.org/10.5281/zenodo.6048451zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1002/eco.2620openalex-snapshot
Construction and optimization of ecological network based on morphological spatial pattern analysis and minimum cumulative resistance models in Haihe River basin
inferred← citeshttps://doi.org/10.1016/j.ecolmodel.2020.109161openalex-snapshot
Information content in pollination network reveals missing interactions
inferred← citeshttps://doi.org/10.1016/j.isci.2026.116819openalex-snapshot
A paleoecological trophic network model of the Early Ordovician Lower Fezouata Shale (Morocco) fossil fauna
inferred← citeshttps://doi.org/10.1016/j.patter.2023.100738openalex-snapshot
Network embedding unveils the hidden interactions in the mammalian virome
inferred← citeshttps://doi.org/10.1098/rstb.2023.0166openalex-snapshot
Spatially explicit predictions of food web structure from regional-level data
inferred← citeshttps://doi.org/10.1101/2020.01.27.921429openalex-snapshot
Environmental biases in the study of ecological networks at the planetary scale
inferred← citeshttps://doi.org/10.1109/jstars.2023.3342985openalex-snapshot
Stability of Regional Ecological Supply–Demand Is Enhanced by Complex Network Modeling: Evidence From the Xuzhou Metropolitan Area, China
inferred← citeshttps://doi.org/10.1111/2041-210x.13835openalex-snapshot
Food web reconstruction through phylogenetic transfer of low‐rank network representation
inferred← citeshttps://doi.org/10.1111/2041-210x.14225openalex-snapshot
Practical guidelines and the EMLN R package for handling ecological multilayer networks
inferred← citeshttps://doi.org/10.1111/2041-210x.14228openalex-snapshot
Graph embedding and transfer learning can help predict potential species interaction networks despite data limitations
inferred← citeshttps://doi.org/10.1111/jbi.14127openalex-snapshot
Global knowledge gaps in species interaction networks data
inferred← citeshttps://doi.org/10.21105/joss.02721openalex-snapshot
Mangal.jl and EcologicalNetworks.jl: Two complementary packages for analyzing ecological networks in Julia
inferred← citeshttps://doi.org/10.3389/fevo.2021.623141openalex-snapshot
SVD Entropy Reveals the High Complexity of Ecological Networks
inferred← citeshttps://doi.org/10.3390/e23060703openalex-snapshot
Disentangling the Information in Species Interaction Networks
inferred← citeshttps://doi.org/10.3390/land10030301openalex-snapshot
Circuitscape in Julia: Empowering Dynamic Approaches to Connectivity Assessment
inferred← citeshttps://doi.org/10.3390/land14020323openalex-snapshot
Construction and Optimization of Ecological Network in Kuqa, China
inferred← citeshttps://doi.org/10.7287/peerj.14620v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14620v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.14620v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.14620openalex-snapshot
Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web
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