On the public citation graph
Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria
0 signed · 417 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.copbio.2011.12.022openalex-snapshot
Metabolically versatile large-genome prokaryotes
inferredcites →https://doi.org/10.1016/j.mib.2008.09.006openalex-snapshot
Comparative genomics: the bacterial pan-genome
inferredcites →https://doi.org/10.1016/j.tree.2006.02.002openalex-snapshot
Rebuilding community ecology from functional traits
inferredcites →https://doi.org/10.1016/j.ygeno.2008.03.001openalex-snapshot
Ecophysiological significance of scale-dependent patterns in prokaryotic genomes unveiled by a combination of statistic and genometric analyses
inferredcites →https://doi.org/10.1038/ismej.2011.139openalex-snapshot
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
inferredcites →https://doi.org/10.1038/ismej.2011.159openalex-snapshot
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
inferredcites →https://doi.org/10.1038/ismej.2012.160openalex-snapshot
Phylogenetic conservatism of functional traits in microorganisms
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/nature02403openalex-snapshot
The worldwide leaf economics spectrum
inferredcites →https://doi.org/10.1038/nmeth.2604openalex-snapshot
UPARSE: highly accurate OTU sequences from microbial amplicon reads
inferredcites →https://doi.org/10.1038/nrmicro2367openalex-snapshot
The ecological coherence of high bacterial taxonomic ranks
inferredcites →https://doi.org/10.1073/pnas.0308653100openalex-snapshot
Trends between gene content and genome size in prokaryotic species with larger genomes
inferredcites →https://doi.org/10.1073/pnas.0507535103openalex-snapshot
The diversity and biogeography of soil bacterial communities
inferredcites →https://doi.org/10.1073/pnas.0903507106openalex-snapshot
The genomic basis of trophic strategy in marine bacteria
inferredcites →https://doi.org/10.1073/pnas.0907584106openalex-snapshot
The impact of long-distance horizontal gene transfer on prokaryotic genome size
inferredcites →https://doi.org/10.1073/pnas.1101591108openalex-snapshot
Bacterial community assembly based on functional genes rather than species
inferredcites →https://doi.org/10.1086/368296openalex-snapshot
On the Heritability of Geographic Range Sizes
inferredcites →https://doi.org/10.1093/bioinformatics/btp636openalex-snapshot
PyNAST: a flexible tool for aligning sequences to a template alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btr087openalex-snapshot
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
inferredcites →https://doi.org/10.1093/nar/gkm541openalex-snapshot
Short pyrosequencing reads suffice for accurate microbial community analysis
inferredcites →https://doi.org/10.1093/nar/gkm960openalex-snapshot
The Pfam protein families database
inferredcites →https://doi.org/10.1093/nar/gkn668openalex-snapshot
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
inferredcites →https://doi.org/10.1093/nar/gkn879openalex-snapshot
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
inferredcites →https://doi.org/10.1093/nar/gkr1044openalex-snapshot
IMG: the integrated microbial genomes database and comparative analysis system
inferredcites →https://doi.org/10.1093/nar/gkr988openalex-snapshot
KEGG for integration and interpretation of large-scale molecular data sets
inferredcites →https://doi.org/10.1101/gr.138198.112openalex-snapshot
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
inferredcites →https://doi.org/10.1111/ele.12140openalex-snapshot
Niche breadth predicts geographical range size: a general ecological pattern
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05383.xopenalex-snapshot
Exploration of community traits as ecological markers in microbial metagenomes
inferredcites →https://doi.org/10.1111/j.1461-0248.2007.01070.xopenalex-snapshot
The relationship between dispersal ability and geographic range size
inferredcites →https://doi.org/10.1111/j.1461-0248.2008.01229.xopenalex-snapshot
Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species
inferredcites →https://doi.org/10.1111/j.1461-0248.2010.01507.xopenalex-snapshot
An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure
inferredcites →https://doi.org/10.1111/j.1466-8238.2012.00798.xopenalex-snapshot
Towards a more mechanistic understanding of traits and range sizes
inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01349.xopenalex-snapshot
Assessing the generality of global leaf trait relationships
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/science.1153475openalex-snapshot
Microbial Biogeography: From Taxonomy to Traits
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.02710-13openalex-snapshot
Cell Size Distributions of Soil Bacterial and Archaeal Taxa
inferredcites →https://doi.org/10.1128/aem.56.3.782-787.1990openalex-snapshot
High diversity in DNA of soil bacteria
inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.597openalex-snapshot
THE GEOGRAPHIC RANGE: Size, Shape, Boundaries, and Internal Structure
inferredcites →https://doi.org/10.1371/journal.pcbi.1000465openalex-snapshot
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
inferredcites →https://doi.org/10.1371/journal.pgen.1000808openalex-snapshot
The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1890/05-1839openalex-snapshot
TOWARD AN ECOLOGICAL CLASSIFICATION OF SOIL BACTERIA
inferredcites →https://doi.org/10.1890/11-1745.1openalex-snapshot
Mapping the niche space of soil microorganisms using taxonomy and traits
inferredcites →https://doi.org/10.1890/12-1459.1openalex-snapshot
Functional traits explain phytoplankton responses to environmental gradients across lakes of the United States
inferredcites →https://doi.org/10.1899/12-092.1openalex-snapshot
Delivering on a promise: integrating species traits to transform descriptive community ecology into a predictive science
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4747910openalex-extracted
Chlorophyll Fluorescence Explains More than 70% of Moso Bamboo Forests Productivity Variations During the Leaf-Expansion Stage
inferred← citeshttps://doi.org/10.2139/ssrn.4790089openalex-extracted
Chlorophyll Fluorescence of Moso Bamboo at the Leaf-Expansion Stage in Response to the Environment and its Effect on Gross Primary Productivity
inferred← citeshttps://doi.org/10.1002/9781119004813.ch70openalex-snapshot
Heat Shock Response in Bacteria with Large Genomes: Lessons from Rhizobia
inferred← citeshttps://doi.org/10.1002/advs.202405947openalex-snapshot
Trait‐Based Life History Strategies Shape Bacterial Niche Breadth
inferred← citeshttps://doi.org/10.1002/advs.202510516openalex-snapshot
Divergent Responses of Bacterial Communities to Permafrost Degradation and Their Associations With Carbon Across Vertical Profiles
inferred← citeshttps://doi.org/10.1002/agj2.20358openalex-snapshot
Soil physicochemical properties and bacterial community composition jointly affect crop yield
inferred← citeshttps://doi.org/10.1002/agj2.21264openalex-snapshot
Impacts of long‐term fertilization on crop yield and microbial communities under rice–rapeseed rotation
inferred← citeshttps://doi.org/10.1002/biot.202000101openalex-snapshot
Amorphous Polyphosphate and Ca‐Carbonate Nanoparticles Improve the Self‐Healing Properties of both Technical and Medical Cements
inferred← citeshttps://doi.org/10.1002/ece3.5670openalex-snapshot
Microbial functional diversity: From concepts to applications
inferred← citeshttps://doi.org/10.1002/ecog.08303openalex-snapshot
The stability of microbial community enhanced in the rhizosphere of Phragmites australis at the regional scale across typical plain and plateau in China
inferred← citeshttps://doi.org/10.1002/ecy.2094openalex-snapshot
Variation in range size and dispersal capabilities of microbial taxa
inferred← citeshttps://doi.org/10.1002/ecy.3382openalex-snapshot
Microbial species performance responses to environmental changes: genomic traits and nutrient availability
inferred← citeshttps://doi.org/10.1002/ecy.70047openalex-snapshot
Trait–environmental relationships reveal microbial strategies of environmental adaptation
inferred← citeshttps://doi.org/10.1002/ecy.70072openalex-snapshot
Habitat specialization and edge effects of soil microbial communities in a fragmented landscape
inferred← citeshttps://doi.org/10.1002/ldr.5134openalex-snapshot
Distinguishing the effects of micro‐ and macro‐habitats on plant‐associated microbiomes in the Qinghai‐Tibetan Qaidam Basin
inferred← citeshttps://doi.org/10.1002/lol2.10400openalex-snapshot
Key bacterial groups maintain stream multifunctionality in response to episodic drying
inferred← citeshttps://doi.org/10.1002/mlf2.12042openalex-snapshot
Resistance potential of soil bacterial communities along a biodiversity gradient in forest ecosystems
inferred← citeshttps://doi.org/10.1002/mlf2.12116openalex-snapshot
Ranking environmental and edaphic attributes driving soil microbial community structure and activity with special attention to spatial and temporal scales
inferred← citeshttps://doi.org/10.1007/978-3-030-45385-5_58openalex-snapshot
Profiling Environmental Conditions from DNA
inferred← citeshttps://doi.org/10.1007/s00248-014-0530-2openalex-snapshot
Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment
inferred← citeshttps://doi.org/10.1007/s00248-020-01603-9openalex-snapshot
Spatial Variance of Species Distribution Predicts the Interspecies Interactions within a Microbial Metacommunity
inferred← citeshttps://doi.org/10.1007/s00253-018-8757-3openalex-snapshot
The role of soil bacterial community during winter fallow period in the incidence of tobacco bacterial wilt disease
inferred← citeshttps://doi.org/10.1007/s00253-021-11691-3openalex-snapshot
Effect of P availability on straw-induced priming effect was mainly regulated by fungi in croplands
inferred← citeshttps://doi.org/10.1007/s00284-025-04656-6openalex-snapshot
Changes in Soil Fungal Communities Following Exogenously Added Tobacco Mosaic Virus Disease
inferred← citeshttps://doi.org/10.1007/s00374-022-01675-4openalex-snapshot
Absolute microbiome profiling highlights the links among microbial stability, soil health, and crop productivity under long-term sod-based rotation
inferred← citeshttps://doi.org/10.1007/s11104-018-3777-4openalex-snapshot
Heterogeneity in arbuscular mycorrhizal fungal communities may contribute to inconsistent plant-soil feedback in a Neotropical forest
inferred← citeshttps://doi.org/10.1007/s11104-025-07293-xopenalex-snapshot
Soil core taxa and their regulatory microbial competition determine wheat health under warming fluctuations
inferred← citeshttps://doi.org/10.1007/s11104-025-07866-wopenalex-snapshot
Optimized nitrogen and phosphorus inputs increase the complexity of the soil arbuscular mycorrhizal fungal network to sustain wheat production on China's Loess Plateau
inferred← citeshttps://doi.org/10.1007/s11104-026-08610-8openalex-snapshot
Microbial genomic traits and soil stoichiometry drive nitrogen stabilization in maize–peanut intercropping system
inferred← citeshttps://doi.org/10.1007/s11104-026-08793-0openalex-snapshot
Combined shading and waterlogging stress threaten grain mineral nutrition of wheat
inferred← citeshttps://doi.org/10.1007/s11104-026-08817-9openalex-snapshot
Returning straw and applying appropriate nitrogen fertilizer could increase acid-hydrolysable ammonium nitrogen and amino sugar nitrogen in the soil, thereby promoting effective panicle number and ultimately boosting rice yield
inferred← citeshttps://doi.org/10.1007/s11252-016-0617-2openalex-snapshot
Contrasting effects of urban habitat complexity on metabolic functional diversity and composition of litter and soil bacterial communities
inferred← citeshttps://doi.org/10.1007/s11356-021-16830-xopenalex-snapshot
Rare soil bacteria are more responsive in desertification restoration than abundant bacteria
inferred← citeshttps://doi.org/10.1007/s11368-025-04054-2openalex-snapshot
Nine-year biochar history increases topsoil nitrogen stocks and reduces the refractory organic nitrogen fractions in deep soils
inferred← citeshttps://doi.org/10.1007/s42832-021-0109-zopenalex-snapshot
Soil phosphorus determines the distinct assembly strategies for abundant and rare bacterial communities during successional reforestation
inferred← citeshttps://doi.org/10.1007/s42832-023-0197-zopenalex-snapshot
Stochastic community assembly of abundant taxa maintains the relationship of soil biodiversity-multifunctionality under mercury stress
inferred← citeshttps://doi.org/10.1007/s42832-024-0241-7openalex-snapshot
Effects of core soil microbial taxa on soil carbon source utilization under different long-term fertilization treatments in Ultisol
inferred← citeshttps://doi.org/10.1007/s42832-024-0289-4openalex-snapshot
Distinct effects of abundant and rare microbial communities on ecosystem multifunctionality across the soil profiles in agricultural Isohumosols
inferred← citeshttps://doi.org/10.1007/s42832-026-0423-6openalex-snapshot
Soil microbial biogeography: from maps to blueprints
inferred← citeshttps://doi.org/10.1007/s42832-026-0460-1openalex-snapshot
Quantifying taxonomy-function associations across hierarchical scales of bacterial nitrogen cycling
inferred← citeshttps://doi.org/10.1016/b978-0-12-813493-1.00003-xopenalex-snapshot
Evolutionary consequences of climate change
inferred← citeshttps://doi.org/10.1016/b978-0-12-822941-5.00008-9openalex-snapshot
The spatial distribution of soil biota and their functions
inferred← citeshttps://doi.org/10.1016/b978-0-12-822974-3.00109-9openalex-snapshot
Microbiology of extreme soil environments
inferred← citeshttps://doi.org/10.1016/j.agee.2025.110076openalex-snapshot
Distinct bacterial and fungal coexistence patterns and their associations with grassland productivity on the Tibetan Plateau
inferred← citeshttps://doi.org/10.1016/j.apsoil.2018.02.015openalex-snapshot
Effect of dry-rewetting stress on response pattern of soil prokaryotic communities in alpine meadow soil
inferred← citeshttps://doi.org/10.1016/j.apsoil.2019.103395openalex-snapshot
Substituting ecological intensification of agriculture for conventional agricultural practices increased yield and decreased nitrogen losses in North China
inferred← citeshttps://doi.org/10.1016/j.apsoil.2021.104220openalex-snapshot
Soil type and pH mediated arable soil bacterial compositional variation across geographic distance in North China Plain
inferred← citeshttps://doi.org/10.1016/j.apsoil.2023.104881openalex-snapshot
Contributions of abundant and rare bacteria to soil multifunctionality depend on aridity and elevation
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107530openalex-snapshot
Tree mixing mitigates mulching-induced trade-offs in diversity and interactions of soil decomposers and ectomycorrhizal fungi in frequently burned conifer woodlands
inferred← citeshttps://doi.org/10.1016/j.catena.2017.01.007openalex-snapshot
The differentiation of soil bacterial communities along a precipitation and temperature gradient in the eastern Inner Mongolia steppe
inferred← citeshttps://doi.org/10.1016/j.catena.2018.10.043openalex-snapshot
Microbial communities in local and transplanted soils along a latitudinal gradient
inferred← citeshttps://doi.org/10.1016/j.catena.2021.105783openalex-snapshot
Conservative agriculture facilitates soil carbon, nitrogen accumulation, and aggregate stabilization under periodic flooding regimes
inferred← citeshttps://doi.org/10.1016/j.catena.2023.107737openalex-snapshot
The multifunctionality of soil aggregates is related to the complexity of aggregate microbial community during afforestation
inferred← citeshttps://doi.org/10.1016/j.catena.2025.109560openalex-snapshot
Rock and root: Which played more important roles in preferential flow in the rocky mountain area
inferred← citeshttps://doi.org/10.1016/j.cell.2026.01.021openalex-snapshot
The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems
inferred← citeshttps://doi.org/10.1016/j.chemosphere.2019.06.174openalex-snapshot
Dominant role of abundant rather than rare bacterial taxa in maintaining agro-soil microbiomes under environmental disturbances
inferred← citeshttps://doi.org/10.1016/j.cub.2024.11.040openalex-snapshot
Number of global change factors alters the relative roles of abundant and rare microbes in driving soil multifunctionality resistance
inferred← citeshttps://doi.org/10.1016/j.ecolind.2022.108695openalex-snapshot
Ecological stability of microbial communities in Lake Donghu regulated by keystone taxa
inferred← citeshttps://doi.org/10.1016/j.ecolind.2024.111560openalex-snapshot
Efficiency and driving factors for the retention of exogenous inorganic nitrogen in different forest soils
inferred← citeshttps://doi.org/10.1016/j.ejsobi.2025.103786openalex-snapshot
Assembly processes, ecological strategies, and functional potentials of abundant and rare microbial taxa in biological soil crusts from two habitats in arid ecosystems
inferred← citeshttps://doi.org/10.1016/j.envadv.2025.100660openalex-snapshot
Exploring the spatial variability of airborne bacterial and fungal communities: A comparative study across five central Mediterranean areas
inferred← citeshttps://doi.org/10.1016/j.envres.2020.110425openalex-snapshot
Increased plant species richness associates with greater soil bacterial diversity in urban green spaces
inferred← citeshttps://doi.org/10.1016/j.envres.2023.116687openalex-snapshot
Climate factors and host chemical profiles jointly drives the bacterial community assembly in Mussaenda pubescens stems
inferred← citeshttps://doi.org/10.1016/j.envres.2023.117720openalex-snapshot
Broad environmental adaptation of abundant microbial taxa in Robinia pseudoacacia forests during long-term vegetation restoration
inferred← citeshttps://doi.org/10.1016/j.fecs.2026.100436openalex-snapshot
Invasive bamboo removal enhances soil multifunctionality via increasing fungal but not bacterial community stability
inferred← citeshttps://doi.org/10.1016/j.fsi.2020.01.063openalex-snapshot
Immune and gut bacterial successions of large yellow croaker (Larimichthys crocea) during Pseudomonas plecoglossicida infection
inferred← citeshttps://doi.org/10.1016/j.fuel.2022.126917openalex-snapshot
Actinobacteria may influence biological methane generation in coal seams
inferred← citeshttps://doi.org/10.1016/j.funeco.2018.08.005openalex-snapshot
The fungal ecology of seabird nesting sites in the Falkland Islands indicates a niche for mycoparasites
inferred← citeshttps://doi.org/10.1016/j.geoderma.2018.01.010openalex-snapshot
Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation
inferred← citeshttps://doi.org/10.1016/j.geoderma.2018.09.035openalex-snapshot
Soil bacterial community structure in Chinese wetlands
inferred← citeshttps://doi.org/10.1016/j.geoderma.2019.01.020openalex-snapshot
Spatial and temporal variability of the soil microbiological properties in two soils with a different pedogenesis cropped to winter rape (Brassica napus L.)
inferred← citeshttps://doi.org/10.1016/j.geoderma.2021.115543openalex-snapshot
Assembly processes of abundant and rare microbial communities in orchard soil under a cover crop at different periods
inferred← citeshttps://doi.org/10.1016/j.geoderma.2022.115866openalex-snapshot
Microbial habitat specificity largely affects microbial co-occurrence patterns and functional profiles in wetland soils
inferred← citeshttps://doi.org/10.1016/j.geoderma.2026.117723openalex-snapshot
Differential responses of prokaryotic and fungal communities in soil microenvironments to drying and wetting as affected by soil aggregate isolation method
inferred← citeshttps://doi.org/10.1016/j.gloplacha.2023.104323openalex-snapshot
Landscape differentiation of soil bacteria and bacteria-soil-vegetation interactions in desert-oasis ecosystems
inferred← citeshttps://doi.org/10.1016/j.isci.2020.101624openalex-snapshot
Environmental Atlas of Prokaryotes Enables Powerful and Intuitive Habitat-Based Analysis of Community Structures
inferred← citeshttps://doi.org/10.1016/j.isci.2024.110053openalex-snapshot
Microbiome analysis in Asia’s largest watershed reveals inconsistent biogeographic pattern and microbial assembly mechanisms in river and lake systems
inferred← citeshttps://doi.org/10.1016/j.jece.2026.125348openalex-snapshot
Site-specific bacterial community and functional gene responses to repeated benzo[a]pyrene amendment in coking-site soils
inferred← citeshttps://doi.org/10.1016/j.jenvman.2023.117757openalex-snapshot
The six-year biochar retention interacted with fertilizer addition alters the soil organic nitrogen supply capacity in bulk and rhizosphere soil
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.121185openalex-snapshot
Effects of chlorophyll fluorescence on environment and gross primary productivity of moso bamboo during the leaf-expansion stage
inferred← citeshttps://doi.org/10.1016/j.jenvman.2026.129901openalex-snapshot
Functional complementarity of abundant and rare taxa mediates soil carbon sequestration during subtropical forest restoration
inferred← citeshttps://doi.org/10.1016/j.jes.2021.10.031openalex-snapshot
Significant tipping points of sediment microeukaryotes forewarn increasing antibiotic pollution
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2021.125094openalex-snapshot
Synergistic effects of antimony and arsenic contaminations on bacterial, archaeal and fungal communities in the rhizosphere of Miscanthus sinensis: Insights for nitrification and carbon mineralization
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2024.133456openalex-snapshot
Ecological succession of abundant and rare subcommunities during aerobic composting in the presence of residual amoxicillin
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2026.142063openalex-snapshot
Enantioselective alteration of soil bacterial community assembly and keystone taxa under chiral triadimefon stress
inferred← citeshttps://doi.org/10.1016/j.jhydrol.2025.133777openalex-snapshot
Wetlands change in mid to high latitude region from the perspectives of patch and landscape scales
inferred← citeshttps://doi.org/10.1016/j.pedobi.2019.01.001openalex-snapshot
Bacterial and fungal saprotrophs are strongly stimulated weeks to months after forest soil profile reconstruction
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.06.240openalex-snapshot
Distinct biogeographic patterns of rhizobia and non-rhizobial endophytes associated with soybean nodules across China
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.11.442openalex-snapshot
Effect of soil horizon stratigraphy on the microbial ecology of alpine paleosols
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2019.134015openalex-snapshot
Bacterioplankton community responses and the potential ecological thresholds along disturbance gradients
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.142225openalex-snapshot
Interactions between methanotrophs and ammonia oxidizers modulate the response of in situ methane emissions to simulated climate change and its legacy in an acidic soil
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.144349openalex-snapshot
Topsoil microbial community structure responds to land cover type and environmental zone in the Western Pacific region
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2021.146021openalex-snapshot
Stochastic processes drive bacterial and fungal community assembly in sustainable intensive agricultural soils of Shanghai, China
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2021.149723openalex-snapshot
Pollution alters methanogenic and methanotrophic communities and increases dissolved methane in small ponds
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2021.149886openalex-snapshot
A higher river sinuosity increased riparian soil structural stability on the downstream of a dammed river
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.152991openalex-snapshot
Environmental stress-discriminatory taxa are associated with high C and N cycling functional potentials in dryland grasslands
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.156533openalex-snapshot
Nitrogen deficiency in soil mediates multifunctionality responses to global climatic drivers
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.158791openalex-snapshot
Ecological life strategies of microbes in response to antibiotics as a driving factor in soils
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.162063openalex-snapshot
Weak environmental adaptation of rare phylotypes sustaining soil multi-element cycles in response to decades-long fertilization
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.162178openalex-snapshot
Abundant bacterial subcommunity is structured by a stochastic process in an agricultural system with P fertilizer inputs
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.165056openalex-snapshot
Soil core microbiota drive community resistance to mercury stress and maintain functional stability
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.165426openalex-snapshot
nirS and nosZII bacterial denitrifiers as well as fungal denitrifiers are coupled with N2O emissions in long-term fertilized soils
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.172785openalex-snapshot
Biogeographic effects shape soil bacterial communities across intertidal zones on island beaches through regulating soil properties
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.178812openalex-snapshot
The host phylogeny and climate determine the gut bacteria of global insects
inferred← citeshttps://doi.org/10.1016/j.soilbio.2015.11.005openalex-snapshot
Long-term organic and inorganic fertilization alters temperature sensitivity of potential N2O emissions and associated microbes
inferred← citeshttps://doi.org/10.1016/j.soilbio.2016.01.007openalex-snapshot
Crop rotations alter bacterial and fungal diversity in paddy soils across East Asia
inferred← citeshttps://doi.org/10.1016/j.soilbio.2018.11.027openalex-snapshot
The efficacy of 3,4-dimethylpyrazole phosphate on N2O emissions is linked to niche differentiation of ammonia oxidizing archaea and bacteria across four arable soils
inferred← citeshttps://doi.org/10.1016/j.soilbio.2020.107974openalex-snapshot
NosZ clade II rather than clade I determine in situ N2O emissions with different fertilizer types under simulated climate change and its legacy
inferred← citeshttps://doi.org/10.1016/j.soilbio.2021.108192openalex-snapshot
Canonical ammonia oxidizers, rather than comammox Nitrospira, dominated autotrophic nitrification during the mineralization of organic substances in two paddy soils
inferred← citeshttps://doi.org/10.1016/j.soilbio.2021.108210openalex-snapshot
Loss of microbial diversity does not decrease γ-HCH degradation but increases methanogenesis in flooded paddy soil
inferred← citeshttps://doi.org/10.1016/j.soilbio.2021.108382openalex-snapshot
Co-symbiosis of arbuscular mycorrhizal fungi (AMF) and diazotrophs promote biological nitrogen fixation in mangrove ecosystems
inferred← citeshttps://doi.org/10.1016/j.soilbio.2022.108918openalex-snapshot
Litter chemistry of common European tree species drives the feeding preference and consumption rate of soil invertebrates, and shapes the diversity and structure of gut and faecal microbiomes
inferred← citeshttps://doi.org/10.1016/j.soilbio.2022.108935openalex-snapshot
Edaphic controls on genome size and GC content of bacteria in soil microbial communities
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109541openalex-snapshot
Environmental preferences of soil microbial attributes for long-term nitrogen and acid addition: From phylotype to community
inferred← citeshttps://doi.org/10.1016/j.soilbio.2025.109933openalex-snapshot
Functional molecular diversity of dissolved organic matter explained by predicted genome size of soil microbial communities
inferred← citeshttps://doi.org/10.1016/j.still.2023.105634openalex-snapshot
Divergent responses of phoD- and pqqC-harbouring bacterial communities across soil aggregates to long fertilization practices
inferred← citeshttps://doi.org/10.1016/j.still.2023.105740openalex-snapshot
Periodic flooding enhances the function of soil Fe/Al oxides in stabilizing particulate organic carbon in a water level drawdown zone
inferred← citeshttps://doi.org/10.1016/j.still.2024.106097openalex-snapshot
Response of bacterial communities, enzyme activities and dynamic changes of soil organic nitrogen fractions to six-year different application levels of biochar retention in Northeast China
inferred← citeshttps://doi.org/10.1016/j.still.2026.107305openalex-snapshot
Trade-off of abundant and rare taxa in conservation tillage systems: Evidence from the gut microbiota of soil Collembolas
inferred← citeshttps://doi.org/10.1016/j.watres.2021.117163openalex-snapshot
Biofouling control: the impact of biofilm dispersal and membrane flushing
inferred← citeshttps://doi.org/10.1016/j.watres.2023.120995openalex-snapshot
Insight into the role of niche concept in deciphering the ecological drivers of MPs-associated bacterial communities in mangrove forest
inferred← citeshttps://doi.org/10.1016/j.watres.2024.122470openalex-snapshot
Response of bacterial and fungal communities in natural biofilms to bioavailable heavy metals in a mining-affected river
inferred← citeshttps://doi.org/10.1016/j.watres.2024.122846openalex-snapshot
Warming effects on pelagic carbon metabolism is related to substrate composition and bacterioplankton community history
inferred← citeshttps://doi.org/10.1016/s1002-0160(20)60038-8openalex-snapshot
Bacterial communities associated with natural and commercially grown rooibos (Aspalathus linearis)
inferred← citeshttps://doi.org/10.1021/acs.jafc.2c06708openalex-snapshot
Root Exudates of Ginger Induced by Ralstonia solanacearum Infection Could Inhibit Bacterial Wilt
inferred← citeshttps://doi.org/10.1021/acs.jpcb.2c01359openalex-snapshot
Homeoviscous Adaptation of the Lipid Membrane of a Soil Bacterium Surviving under Diurnal Temperature Variation: A Molecular Simulation Perspective
inferred← citeshttps://doi.org/10.1021/acsomega.5c08533openalex-snapshot
Heavy Metals and Microbiological Assessment of the Soil–Plant System of Flooded Areas Applied on Chard ( Beta vulgaris )
inferred← citeshttps://doi.org/10.1038/ismej.2015.171openalex-snapshot
Predicting microbial traits with phylogenies
inferred← citeshttps://doi.org/10.1038/ismej.2015.201openalex-snapshot
Predicting taxonomic and functional structure of microbial communities in acid mine drainage
inferred← citeshttps://doi.org/10.1038/ismej.2016.174openalex-snapshot
Where less may be more: how the rare biosphere pulls ecosystems strings
inferred← citeshttps://doi.org/10.1038/nmicrobiol.2016.198openalex-snapshot
Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’
inferred← citeshttps://doi.org/10.1038/s41396-018-0076-2openalex-snapshot
Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession
inferred← citeshttps://doi.org/10.1038/s41396-019-0427-7openalex-snapshot
Resource heterogeneity structures aquatic bacterial communities
inferred← citeshttps://doi.org/10.1038/s41396-019-0454-4openalex-snapshot
A Randomized Trait Community Clustering approach to unveil consistent environmental thresholds in community assembly
inferred← citeshttps://doi.org/10.1038/s41396-020-0600-zopenalex-snapshot
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
inferred← citeshttps://doi.org/10.1038/s41396-021-00981-3openalex-snapshot
The chosen few—variations in common and rare soil bacteria across biomes
inferred← citeshttps://doi.org/10.1038/s41467-019-11488-zopenalex-snapshot
Microbial carbon use efficiency predicted from genome-scale metabolic models
inferred← citeshttps://doi.org/10.1038/s41467-024-47755-xopenalex-snapshot
Composition and metabolism of microbial communities in soil pores
inferred← citeshttps://doi.org/10.1038/s41467-024-50368-zopenalex-snapshot
Eco-evolutionary strategies for relieving carbon limitation under salt stress differ across microbial clades
inferred← citeshttps://doi.org/10.1038/s41559-019-0828-zopenalex-snapshot
Range-expansion effects on the belowground plant microbiome
inferred← citeshttps://doi.org/10.1038/s41559-022-01935-4openalex-snapshot
Soil biodiversity supports the delivery of multiple ecosystem functions in urban greenspaces
inferred← citeshttps://doi.org/10.1038/s41559-023-02149-yopenalex-snapshot
Multidimensional specialization and generalization are pervasive in soil prokaryotes
inferred← citeshttps://doi.org/10.1038/s41559-025-02904-3openalex-snapshot
Core rumen microbes are functional generalists that sustain host metabolism and gut ecosystem function
inferred← citeshttps://doi.org/10.1038/s41564-017-0062-xopenalex-snapshot
Detecting macroecological patterns in bacterial communities across independent studies of global soils
inferred← citeshttps://doi.org/10.1038/s41564-023-01582-wopenalex-snapshot
Predictions of rhizosphere microbiome dynamics with a genome-informed and trait-based energy budget model
inferred← citeshttps://doi.org/10.1038/s41598-017-10613-6openalex-snapshot
Metagenomic evidence of stronger effect of stylo (legume) than bahiagrass (grass) on taxonomic and functional profiles of the soil microbial community
inferred← citeshttps://doi.org/10.1038/s41598-019-48571-wopenalex-snapshot
A hierarchy of environmental covariates control the global biogeography of soil bacterial richness
inferred← citeshttps://doi.org/10.1038/s41598-019-50952-0openalex-snapshot
The capacity of wastewater treatment plants drives bacterial community structure and its assembly
inferred← citeshttps://doi.org/10.1038/s41598-020-65203-wopenalex-snapshot
The Effects of Tetracycline Residues on the Microbial Community Structure of Tobacco Soil in Pot Experiment
inferred← citeshttps://doi.org/10.1038/s41598-022-07132-4openalex-snapshot
The structure of microbial communities of activated sludge of large-scale wastewater treatment plants in the city of Moscow
inferred← citeshttps://doi.org/10.1038/s42003-025-08764-8openalex-snapshot
Divergent community assembly processes and multifunctionality contributions of abundant and rare soil bacteria during a 53-year restoration in the Tengger Desert, China
inferred← citeshttps://doi.org/10.1038/srep37719openalex-snapshot
Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient
inferred← citeshttps://doi.org/10.1073/pnas.1508382112openalex-snapshot
Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe
inferred← citeshttps://doi.org/10.1073/pnas.1706324114openalex-snapshot
Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest
inferred← citeshttps://doi.org/10.1073/pnas.2316031121openalex-snapshot
Saccharomycotina yeasts defy long-standing macroecological patterns
inferred← citeshttps://doi.org/10.1073/pnas.2413032122openalex-snapshot
Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
inferred← citeshttps://doi.org/10.1080/03650340.2022.2049254openalex-snapshot
Rare microbial populations as sensitive indicators of bacterial community dissimilarity under different agricultural management practices
inferred← citeshttps://doi.org/10.1093/9780191858710.003.0002openalex-snapshot
The diversity of life in soil
inferred← citeshttps://doi.org/10.1093/9780191858710.003.0003openalex-snapshot
Soil biota and ecosystem functioning
inferred← citeshttps://doi.org/10.1093/9780191858710.003.0004openalex-snapshot
Feedbacks between plants and soil biota
inferred← citeshttps://doi.org/10.1093/9780191858710.003.0005openalex-snapshot
Above-ground consumers, soil biota, and ecosystem function
inferred← citeshttps://doi.org/10.1093/9780191858710.003.0006openalex-snapshot
Soil biota and climate change
inferred← citeshttps://doi.org/10.1093/9780191858710.003.0007openalex-snapshot
Soil biota and sustainability goals
inferred← citeshttps://doi.org/10.1093/9780191858710.003.0008openalex-snapshot
Some conclusions and future perspectives
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0007openalex-snapshot
Predation and Protists
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0011openalex-snapshot
Processes in Anoxic Environments
inferred← citeshttps://doi.org/10.1093/9780197831632.003.0014openalex-snapshot
Symbioses and Microbes
inferred← citeshttps://doi.org/10.1093/biosci/biac036openalex-snapshot
Expanding the Pulse–Reserve Paradigm to Microorganisms on the Basis of Differential Reserve Management Strategies
inferred← citeshttps://doi.org/10.1093/femsec/fiaa240openalex-snapshot
Many roads to bacterial generalism
inferred← citeshttps://doi.org/10.1093/femsec/fiad154openalex-snapshot
Adaptive radiations in natural populations of prokaryotes: innovation is key
inferred← citeshttps://doi.org/10.1093/femsec/fiw012openalex-snapshot
Biogeography of thermophilic phototrophic bacteria belonging toRoseiflexusgenus
inferred← citeshttps://doi.org/10.1093/femsec/fiw185openalex-snapshot
Small-scale spatial heterogeneity of ecosystem properties, microbial community composition and microbial activities in a temperate mountain forest soil
inferred← citeshttps://doi.org/10.1093/femsle/fnab011openalex-snapshot
Are recently deglaciated areas at both poles colonised by the same bacteria?
inferred← citeshttps://doi.org/10.1093/femsle/fnae025openalex-snapshot
Leveraging aquatic-terrestrial interfaces to capture putative habitat generalists
inferred← citeshttps://doi.org/10.1093/femsmc/xtab020openalex-snapshot
Variation in genomic traits of microbial communities among ecosystems
inferred← citeshttps://doi.org/10.1093/ismeco/ycag132openalex-snapshot
Microhabitat-specific restructuring of soil protist communities along a tropical land-use intensification gradient
inferred← citeshttps://doi.org/10.1093/ismeco/ycag190openalex-snapshot
Fit for purpose: evaluation and evolution of agricultural bioinoculants across production landscapes
inferred← citeshttps://doi.org/10.1093/ismejo/wraf222openalex-snapshot
High strain-level diversity of Bradyrhizobium across Australian soils
inferred← citeshttps://doi.org/10.1093/ismejo/wrag134openalex-snapshot
Carbon regime structures functional trait trajectories during primary succession in microorganisms
inferred← citeshttps://doi.org/10.1093/nsr/nwag319openalex-snapshot
Occupancy as a key attribute linking saprotrophic fungi to soil carbon decomposition
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.001.0001openalex-snapshot
Processes in Microbial Ecology
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0002openalex-snapshot
Elements, biochemicals, and structures of microbes
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0003openalex-snapshot
The physical-chemical environment of microbes
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0004openalex-snapshot
Community structure of microbes in natural environments
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0005openalex-snapshot
Genomes and meta-omics for microbes
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0006openalex-snapshot
Microbial primary production and phototrophy
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0007openalex-snapshot
Degradation of organic matter
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0008openalex-snapshot
Microbial growth, biomass production, and controls
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0010openalex-snapshot
The ecology of viruses
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0012openalex-snapshot
The nitrogen cycle
inferred← citeshttps://doi.org/10.1093/oso/9780198789406.003.0013openalex-snapshot
Introduction to geomicrobiology
inferred← citeshttps://doi.org/10.1098/rsbl.2022.0450openalex-snapshot
Larger genomes show improved buffering of adult fitness against environmental stress in seed beetles
inferred← citeshttps://doi.org/10.1098/rspb.2016.0896openalex-snapshot
Microbes in the Anthropocene: spillover of agriculturally selected bacteria and their impact on natural ecosystems
showing the first 200 of 368 · page through all 368
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.