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Detecting past changes of effective population size

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The Moray Firth Seal Management Plan: an adaptive framework for balancing the conservation of seals, salmon, fisheries and wildlife tourism in the UK
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Statistics for Microsatellite Variation Based on Coalescence
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The Number of Lines of Descent and Fixation Probabilities of Alleles in the Pure Genetic Drift Process: Analytical Approximations
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Precocious maturation and smoltification in wild Atlantic salmon in the Armorican massif, France
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A review of homing and straying of wild and hatchery-produced salmon
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Microsatellite evolution: Markov transition functions for a suite of models
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The distribution of coalescence times and distances between microsatellite alleles with changing effective population size
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Management of salmonid fisheries in the British Isles: towards a practical approach based on population genetics
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Evidence for population growth in humans is confounded by fine-scale population structure
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Effective population size/adult population size ratios in wildlife: a review
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Efective population size/adult population size ratios in wildlife: a review
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An examination of genetic diversity and effective population size in Atlantic salmon populations
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The influence of male parr body size and mate competition on fertilization success and effective population size in Atlantic salmon
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Signatures of Population Expansion in Microsatellite Repeat Data
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Maximum Likelihood Estimation of Population Growth Rates Based on the Coalescent
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Inference of Population History Using a Likelihood Approach
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Genealogical Inference From Microsatellite Data
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Nonequilibrium Migration in Human History
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Detecting Population Expansion and Decline Using Microsatellites
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An Integrated Framework for the Inference of Viral Population History From Reconstructed Genealogies
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Likelihood-Based Estimation of Microsatellite Mutation Rates
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Alternative Mating Strategies in Atlantic Salmon and Brown Trout
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Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences
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Population growth makes waves in the distribution of pairwise genetic differences.
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Sampling theory for neutral alleles in a varying environment
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Microsatellite Data Support an Early Population Expansion in Africa
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Genetic differentiation between freshwater resident and anadromous brown trout, Salmo trutta, within watercourses
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A set of 37 microsatellite DNA markers for genetic diversity and structure analysis of Atlantic salmon Salmo salar populations
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Statistical inferences in phylogeography
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04783.xopenalex-snapshot
Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05248.xopenalex-snapshot
Bayesian inference of a historical bottleneck in a heavily exploited marine mammal
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HOMING AND OLFACTION IN SALMONIDS: A CRITICAL REVIEW WITH SPECIAL REFERENCE TO THE ATLANTIC SALMON
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Understanding and Estimating Effective Population Size for Practical Application in Marine Species Management
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GENETIC EVIDENCE FOR A PLEISTOCENE POPULATION EXPLOSION
inferredcites →https://doi.org/10.1126/science.1078311openalex-snapshot
Genetic Structure of Human Populations
inferredcites →https://doi.org/10.1126/science.1172257openalex-snapshot
The Genetic Structure and History of Africans and African Americans
inferredcites →https://doi.org/10.1139/d98-012openalex-snapshot
Why aren't there more Atlantic salmon ( Salmo salar )?
inferredcites →https://doi.org/10.1139/f02-011openalex-snapshot
Tributary-specific variation in timing of return of adult Atlantic salmon ( Salmo salar ) to fresh water has a genetic component
inferredcites →https://doi.org/10.1139/f04-215openalex-snapshot
Factors affecting marine production of Atlantic salmon (Salmo salar)
inferredcites →https://doi.org/10.1146/annurev.ecolsys.31.1.139openalex-snapshot
Inbreeding Depression in Conservation Biology
inferredcites →https://doi.org/10.1214/ss/1177011136openalex-snapshot
Inference from Iterative Simulation Using Multiple Sequences
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The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes
inferredcites →https://doi.org/10.1534/genetics.110.125260openalex-snapshot
Joint Inference of Microsatellite Mutation Models, Population History and Genealogies Using Transdimensional Markov Chain Monte Carlo
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A General Method for Calculating Likelihoods Under the Coalescent Process
inferredcites →https://doi.org/10.1890/1051-0761(2002)012[0184:iviasf]2.0.co;2openalex-snapshot
INDIVIDUAL VARIATION IN ATLANTIC SALMON FERTILIZATION SUCCESS: IMPLICATIONS FOR EFFECTIVE POPULATION SIZE
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R: A Language and Environment for Statistical Computing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Current and Historical Genetic Structure of the White-Footed Tamarin (Saguinus leucopus)
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Population genetic structure and demographic history of Rhodeus atremius suigensis, an endangered bitterling in Japan
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Genetic diversity, structure, and demographic histories of unique and ancient wolf lineages in India
inferred← citeshttps://doi.org/10.1007/s10709-017-0006-7openalex-snapshot
Historical demography of common carp estimated from individuals collected from various parts of the world using the pairwise sequentially markovian coalescent approach
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Genetic Diversity, Population Size, and Conservation of the Critically Endangered Perrier’s Sifaka (Propithecus perrieri)
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inferred← citeshttps://doi.org/10.1016/j.biocon.2017.12.028openalex-snapshot
Low genetic diversity, limited gene flow and widespread genetic bottleneck effects in a threatened dolphin species, the Australian humpback dolphin
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The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure
inferred← citeshttps://doi.org/10.1038/s41437-019-0245-8openalex-snapshot
Speciation and subsequent secondary contact in two edaphic endemic primroses driven by Pleistocene climatic oscillation
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Genetic erosion reduces biomass temporal stability in wild fish populations
inferred← citeshttps://doi.org/10.1038/s41598-021-82183-7openalex-snapshot
Population genetics and evolutionary history of the endangered Eld’s deer (Rucervus eldii) with implications for planning species recovery
inferred← citeshttps://doi.org/10.1038/s41598-021-86406-9openalex-snapshot
Extreme philopatry and genetic diversification at unprecedented scales in a seabird
inferred← citeshttps://doi.org/10.1038/s41598-021-95918-3openalex-snapshot
Genetic analyses reveal demographic decline and population differentiation in an endangered social carnivore, Asiatic wild dog
inferred← citeshttps://doi.org/10.1073/pnas.2410951122openalex-snapshot
The effect of habitat loss and fragmentation on isolation by distance and divergence
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Late Miocene origin and recent population collapse of the Malagasy savanna olive tree (Noronhia lowryi)
inferred← citeshttps://doi.org/10.1093/g3journal/jkae153openalex-snapshot
ONeSAMP 3.0: estimation of effective population size via single nucleotide polymorphism data from one population
inferred← citeshttps://doi.org/10.1093/jhered/esaf037openalex-snapshot
Regional population genetics and global phylogeography of the widely distributed golden jackal ( Canis aureus ): Implications for conservation management
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Problems and Cautions With Sequence Mismatch Analysis and Bayesian Skyline Plots to Infer Historical Demography
inferred← citeshttps://doi.org/10.1098/rsbl.2019.0560openalex-snapshot
Demographic expansion of an African opportunistic carnivore during the Neolithic revolution
inferred← citeshttps://doi.org/10.1098/rsos.251629openalex-snapshot
Contrasting genetic diversity and ecological niche modelling of the montane grass mouse Akodon montensis in the south of the Atlantic Forest
inferred← citeshttps://doi.org/10.1101/2019.12.20.884734openalex-snapshot
Genetic erosion reduces biomass temporal stability in wild fish populations
inferred← citeshttps://doi.org/10.1101/2022.10.26.513874openalex-snapshot
The effect of habitat loss and fragmentation on isolation-by-distance and time
inferred← citeshttps://doi.org/10.1101/2023.09.14.557784openalex-snapshot
ONeSAMP 3.0: Effective Population Size via SNP Data for One Population Sample
inferred← citeshttps://doi.org/10.1111/1365-2745.13455openalex-snapshot
Gene flow effects on populations inhabiting marginal areas: Origin matters
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Inferring past demographic changes from contemporary genetic data: A simulation‐based evaluation of the ABC methods implemented in diyabc
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A model‐derived short‐term estimation method of effective size for small populations with overlapping generations
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Long‐term urbanization impacts the eastern golden frog (Pelophylax plancyi) in Shanghai City: Demographic history, genetic structure, and implications for amphibian conservation in intensively urbanizing environments
inferred← citeshttps://doi.org/10.1111/eva.13306openalex-snapshot
Species–landscape interactions drive divergent population trajectories in four forest‐dependent Afromontane forest songbird species within a biodiversity hotspot in South Africa
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Eco‐evolutionary factors that influence its demographic oscillations in Prochilodus costatus (Actinopterygii: Characiformes) populations evidenced through a genetic spatial–temporal evaluation
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Population genetic structure of the endemic sponge Lubomirskia baikalensis in Lake Baikal in the light of mass disease and mortality events
inferred← citeshttps://doi.org/10.1111/ibi.12864openalex-snapshot
High genetic diversity despite drastic bottleneck in a critically endangered, long‐lived seabird, the Mascarene Petrel Pseudobulweria aterrima
inferred← citeshttps://doi.org/10.1111/jbi.14241openalex-snapshot
Evolutionary history of the roan antelope across its African range
inferred← citeshttps://doi.org/10.1111/jbi.14552openalex-snapshot
Rear‐edge daylily populations show legacies of habitat fragmentation due to the Holocene climate warming
inferred← citeshttps://doi.org/10.1111/jbi.15159openalex-snapshot
Complete Mitochondrial Genomes Provide Evidence of a Killer Whale Refugium Off the Coast of Japan During the Last Glacial Maximum
inferred← citeshttps://doi.org/10.1111/mec.13540openalex-snapshot
PSMC analysis of effective population sizes in molecular ecology and its application to black‐and‐whiteFicedulaflycatchers
inferred← citeshttps://doi.org/10.1111/mec.13890openalex-snapshot
Spatio‐temporal genetic structure and the effects of long‐term fishing in two partially sympatric offshore demersal fishes
inferred← citeshttps://doi.org/10.1111/mec.14019openalex-snapshot
Trapped within the city: integrating demography, time since isolation and population‐specific traits to assess the genetic effects of urbanization
inferred← citeshttps://doi.org/10.1111/mec.14173openalex-snapshot
Climate change and human colonization triggered habitat loss and fragmentation in Madagascar
inferred← citeshttps://doi.org/10.1111/mec.14378openalex-snapshot
Did Late Pleistocene climate change result in parallel genetic structure and demographic bottlenecks in sympatric Central African crocodiles, Mecistops and Osteolaemus?
inferred← citeshttps://doi.org/10.1111/mec.17597openalex-snapshot
Species‐Specific Traits Shape Genetic Diversity During an Expansion–Contraction Cycle and Bias Demographic History Reconstruction
inferred← citeshttps://doi.org/10.1139/cjz-2016-0325openalex-snapshot
Genetic population structure of fishers (Pekania pennanti) in the Great Lakes region: remnants and reintroductions
inferred← citeshttps://doi.org/10.11609/jott.6532.12.17.17263-17275openalex-snapshot
Genetic and reproductive characterization of distylous Primula reinii in the Hakone volcano, Japan: implications for conservation of the rare and endangered plant
inferred← citeshttps://doi.org/10.1186/s12862-021-01805-wopenalex-snapshot
Recent demographic histories of temperate deciduous trees inferred from microsatellite markers
inferred← citeshttps://doi.org/10.1186/s41065-017-0026-4openalex-snapshot
Estimation of genetic diversity in Gute sheep: pedigree and microsatellite analyses of an ancient Swedish breed
inferred← citeshttps://doi.org/10.1371/journal.pgen.1005877openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0141830openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pone.0308066openalex-snapshot
Genetic diversity of a recovering European roller (Coracias garrulus) population from Serbia
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2024-0253openalex-snapshot
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inferred← citeshttps://doi.org/10.21203/rs.3.rs-119096/v1openalex-snapshot
Recent demographic histories of temperate deciduous trees inferred from microsatellite markers
inferred← citeshttps://doi.org/10.21203/rs.3.rs-126637/v1openalex-snapshot
Predicting Genetic Demography of Rear-edge Populations of Hemerocallis Middendorffii: A Test for Climate Effects in Last Glacial Maximum and Holocene Optimum
inferred← citeshttps://doi.org/10.3389/fevo.2024.1344065openalex-snapshot
Microsatellites for butterfly conservation: historical challenges, current relevance, and a guide to implementation
inferred← citeshttps://doi.org/10.3389/fmars.2017.00393openalex-snapshot
Historical Processes and Contemporary Anthropogenic Activities Influence Genetic Population Dynamics of Nassau Grouper (Epinephelus striatus) within The Bahamas
inferred← citeshttps://doi.org/10.3390/biology14111559openalex-snapshot
Genetic Diversity and Structure for Conservation Genetics of Goldeye Rockfish Sebastes thompsoni (Jordan and Hubbs, 1925) in South Korea
inferred← citeshttps://doi.org/10.3390/d8040031openalex-snapshot
Genetics and Conservation of Plant Species of Extremely Narrow Geographic Range
inferred← citeshttps://doi.org/10.3390/f17040429openalex-snapshot
Geological Isolation Drives Genetic Divergence of Hopea celebica in Sulawesi’s Karst and Ultrabasic Forests
inferred← citeshttps://doi.org/10.3390/genes10100779openalex-snapshot
Conservation Genetic Assessment of Savannah Elephants (Loxodonta africana) in the Greater Kruger Biosphere, South Africa
inferred← citeshttps://doi.org/10.3390/jmse11030524openalex-snapshot
Different Microsatellite Mutation Models May Lead to Contrasting Demographic Inferences through Genealogy-Based Approaches: A Case Study of the Finless Porpoise off the East Asian Coast
inferred← citeshttps://doi.org/10.4269/ajtmh.17-0838openalex-snapshot
Effective Population Size Differences in Calomys musculinus, the Host of Junín Virus: Their Relationship with the Epidemiological History of Argentine Hemorrhagic Fever
inferred← citeshttps://doi.org/10.6084/m9.figshare.14615150openalex-snapshot
Additional file 1 of Recent demographic histories of temperate deciduous trees inferred from microsatellite markers
inferred← citeshttps://doi.org/10.70675/d3180991zb31fz4017z9085zfac23159b0aeopenalex-snapshot
Génomique des populations appliquée : détection de signatures de sélection au sein de populations expérimentales
inferred← citeshttps://doi.org/10.70675/fa8dafd7zc968z44d9za30ez8730875a87e0openalex-snapshot
Estimation de l’histoire démographique des populations à partir de génomes entièrement séquencés
inferred← citeshttps://doi.org/10.7287/peerj.3530v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Demographic inference through approximate-Bayesian-computation skyline plots (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.3530v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Demographic inference through approximate-Bayesian-computation skyline plots (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.3530v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Demographic inference through approximate-Bayesian-computation skyline plots (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.3530v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Demographic inference through approximate-Bayesian-computation skyline plots (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.9167v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Evolutionary history of a Scottish harbour seal population (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.9167v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Evolutionary history of a Scottish harbour seal population (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.9167v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Evolutionary history of a Scottish harbour seal population (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.3530openalex-snapshot
Demographic inference through approximate-Bayesian-computation skyline plots
inferred← citeshttps://doi.org/10.7717/peerj.9167openalex-snapshot
Evolutionary history of a Scottish harbour seal population
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