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History cleans up messes: The impact of time in driving divergence and introgression in a tropical suture zone

https://doi.org/10.1111/evo.13278
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Suture-Zones of Hybrid Interaction Between Recently Joined Biotas
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FISH With and Without COT1 DNA
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Studies on hybrid sterility
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Cryptic species as a window on diversity and conservation
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Ecology and the origin of species
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The barrier to genetic exchange between hybridising populations
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The genomic basis of adaptive evolution in threespine sticklebacks
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Genomic islands of divergence are not affected by geography of speciation in sunflowers
inferredcites →https://doi.org/10.1038/nprot.2009.68openalex-snapshot
Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing
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Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
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The genic view of the process of speciation
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Rapid spread of invasive genes into a threatened native species
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Mathematical model for studying genetic variation in terms of restriction endonucleases.
inferredcites →https://doi.org/10.1086/338370openalex-snapshot
Speciation by Natural and Sexual Selection: Models and Experiments
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Ecological Speciation
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Using GOstats to test gene lists for GO term association
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The Sequence Alignment/Map format and SAMtools
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De novo transcriptome assembly with ABySS
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FLASH: fast length adjustment of short reads to improve genome assemblies
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COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
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The effect of deleterious mutations on neutral molecular variation.
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A Comparison of Multilocus Clines Maintained by Environmental Adaptation or by Selection Against Hybrids
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GENE FLOW AND SELECTION IN A CLINE
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GENE FLOW AND SELECTION IN A TWO-LOCUS SYSTEM
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Hybridization, Introgression, and the Nature of Species Boundaries
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Genome-Wide Congealing and Rapid Transitions across the Speciation Continuum during Speciation with Gene Flow
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PAML 4: Phylogenetic Analysis by Maximum Likelihood
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Universal and rapid salt-extraction of high quality genomic DNA for PCR- based techniques
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RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
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Genetic Analysis of Hybrid Zones
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The Concept of Stasipatric Speciation
inferredcites →https://doi.org/10.1098/rspb.2008.1622openalex-snapshot
Identification and dynamics of a cryptic suture zone in tropical rainforest
inferredcites →https://doi.org/10.1098/rspb.2013.2246openalex-snapshot
Reproductive isolation between phylogeographic lineages scales with divergence
inferredcites →https://doi.org/10.1098/rstb.2011.0196openalex-snapshot
Genomics of isolation in hybrids
inferredcites →https://doi.org/10.1098/rstb.2011.0198openalex-snapshot
Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing
inferredcites →https://doi.org/10.1101/gr.196485.115openalex-snapshot
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot
BLAT —The BLAST -Like Alignment Tool
inferredcites →https://doi.org/10.1101/gr.9.9.868openalex-snapshot
CAP3: A DNA Sequence Assembly Program
inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
inferredcites →https://doi.org/10.1111/1755-0998.12009.xopenalex-snapshot
bgc: Software for Bayesian estimation of genomic clines
inferredcites →https://doi.org/10.1111/1755-0998.12077openalex-snapshot
De novo transcriptomic analyses for non‐model organisms: an evaluation of methods across a multi‐species data set
inferredcites →https://doi.org/10.1111/j.0014-3820.2001.tb00655.xopenalex-snapshot
HYBRID POPULATIONS SELECTIVELY FILTER GENE INTROGRESSION BETWEEN SPECIES
inferredcites →https://doi.org/10.1111/j.0014-3820.2002.tb01385.xopenalex-snapshot
INFERENCES FROM A RAPIDLY MOVING HYBRID ZONE
inferredcites →https://doi.org/10.1111/j.0014-3820.2004.tb01734.xopenalex-snapshot
WHEN VICARS MEET: A NARROW CONTACT ZONE BETWEEN MORPHOLOGICALLY CRYPTIC PHYLOGEOGRAPHIC LINEAGES OF THE RAINFOREST SKINK, CARLIA RUBRIGULARIS
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05583.xopenalex-snapshot
Genome‐wide architecture of reproductive isolation in a naturally occurring hybrid zone betweenMus musculus musculusandM. m. domesticus
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WHY DOES THE GENOTYPE NOT CONGEAL?
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HYPOTHETICAL MECHANISM OF SPECIATION
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SKEPTICISM TOWARDS SANTA ROSALIA, OR WHY ARE THERE SO FEW KINDS OF ANIMALS?
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MULTILOCUS CLINES
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ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
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A SIMULATION STUDY OF MULTILOCUS CLINES
inferredcites →https://doi.org/10.1111/j.1558-5646.1997.tb01479.xopenalex-snapshot
THE PONTIA DAPLIDICE-ED USA HYBRID ZONE IN NORTHWESTERN ITALY
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00413.xopenalex-snapshot
THE HIDDEN SIDE OF INVASIONS: MASSIVE INTROGRESSION BY LOCAL GENES
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00846.xopenalex-snapshot
THE VARIABLE GENOMIC ARCHITECTURE OF ISOLATION BETWEEN HYBRIDIZING SPECIES OF HOUSE MICE
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01222.xopenalex-snapshot
INFERENCE OF SELECTION AND STOCHASTIC EFFECTS IN THE HOUSE MOUSE HYBRID ZONE
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01539.xopenalex-snapshot
STRONG SELECTION AGAINST HYBRIDS MAINTAINS A NARROW CONTACT ZONE BETWEEN MORPHOLOGICALLY CRYPTIC LINEAGES IN A RAINFOREST LIZARD
inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01587.xopenalex-snapshot
GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES
inferredcites →https://doi.org/10.1111/mec.12201openalex-snapshot
The genomic consequences of adaptive divergence and reproductive isolation between species of manakins
inferredcites →https://doi.org/10.1111/mec.12600openalex-snapshot
Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13582openalex-snapshot
Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones
inferredcites →https://doi.org/10.1111/mec.14083openalex-snapshot
Correlated patterns of genetic diversity and differentiation across an avian family
inferredcites →https://doi.org/10.1111/mec.14195openalex-snapshot
Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa
inferredcites →https://doi.org/10.1126/science.1158997openalex-snapshot
Is Genetic Evolution Predictable?
inferredcites →https://doi.org/10.1126/science.1160006openalex-snapshot
Evidence for Ecological Speciation and Its Alternative
inferredcites →https://doi.org/10.1126/science.aac9927openalex-snapshot
Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake
inferredcites →https://doi.org/10.1126/science.aad0843openalex-snapshot
Stable recombination hotspots in birds
inferredcites →https://doi.org/10.1186/1471-2148-12-164openalex-snapshot
Do highly divergent loci reside in genomic regions affecting reproductive isolation? A test using next-generation sequence data in Timema stick insects
inferredcites →https://doi.org/10.1186/1471-2164-13-403openalex-snapshot
Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2011-12-9-r97openalex-snapshot
A comparative analysis of exome capture
inferredcites →https://doi.org/10.1371/journal.pbio.2000234openalex-snapshot
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
inferredcites →https://doi.org/10.1371/journal.pone.0048588openalex-snapshot
LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1534/genetics.108.098095openalex-snapshot
Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts
inferredcites →https://doi.org/10.1890/09-1069.1openalex-snapshot
Distributions, life‐history specialization, and phylogeny of the rain forest vertebrates in the Australian Wet Tropics
inferredcites →https://doi.org/10.2307/2412933openalex-snapshot
Geographic Variation, Speciation, and Clines.
inferredcites →https://doi.org/10.2307/3001780openalex-snapshot
Gene Frequencies in a Cline Determined by Selection and Diffusion
inferredcites →https://doi.org/10.2307/3078919openalex-snapshot
Speciation by Natural and Sexual Selection: Models and Experiments

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Species delimitation in the Gehyra nana (Squamata: Gekkonidae) complex: cryptic and divergent morphological evolution in the Australian Monsoonal Tropics, with the description of four new species
inferred← citeshttps://doi.org/10.1002/evl3.256openalex-snapshot
The dynamics of introgression across an avian radiation
inferred← citeshttps://doi.org/10.1038/s41437-022-00571-9openalex-snapshot
Testing assertions of widespread introgressive hybridization in a clade of neotropical toads with low mate selectivity (Rhinella granulosa species group)
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Dispersal Predicts Hybrid Zone Widths across Animal Diversity: Implications for Species Borders under Incomplete Reproductive Isolation
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Comparative approaches to understanding speciation: a case study in Xantusia lizards
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Widespread reticulate evolution in an adaptive radiation
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Contact zones reveal restricted introgression despite frequent hybridization across a recent lizard radiation
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Suture zones, speciation, and evolution
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Comparing rates of molecular and morphological evolution identifies multiple speciation trajectories in a diverse radiation of skinks
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The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics
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A Framework for Resolving Cryptic Species: A Case Study from the Lizards of the Australian Wet Tropics
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Holobiont suture zones: Parasite evidence across the European house mouse hybrid zone
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Current geography masks dynamic history of gene flow during speciation in northern Australian birds
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Evolutionary dynamics of hybridization and introgression following the recent colonization of Glossy Ibis (Aves: Plegadis falcinellus) into the New World
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Using replicate hybrid zones to understand the genomic basis of adaptive divergence
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Integrating top‐down and bottom‐up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone
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Notes from the taxonomic disaster zone: Evolutionary drivers of intractable species boundaries in an Australian lizard clade (Scincidae: Ctenotus )
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Inferring Time‐to‐Speciation From Hybrid Zone Analysis Informs Assessments of Taxonomic Inflation
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Unrecognized lineages transform our understanding of diversification in a clade of lizards
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Genetic Diversity and Conservation Units: Dealing With the Species-Population Continuum in the Age of Genomics
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Population Genomic Evidence for the Diversification of Bellamya aeruginosa in Different River Systems in China
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