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Wood feeding and social living: Draft genome of the subterranean termite Reticulitermes lucifugus (Blattodea; Termitoidae)

https://doi.org/10.1111/imb.12818
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Journal of Experimental Zoology Part B: Molecular and Developmental Evolution
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Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
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Cyp15F1: A NOVEL CYTOCHROME P450 GENE LINKED TO JUVENILE HORMONE‐DEPENDENT CASTE DIFFERENTION IN THE TERMITE Reticulitermes flavipes
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Archives of insect biochemistry and physiology
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Termite digestomes as sources for novel lignocellulases
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Enormous expansion of the chemosensory gene repertoire in the omnivorous German cockroach Blattella germanica
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Sexual and Asexual Reproduction in Termites
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Genetic Structure of Termite Colonies and Populations
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Philosophical Transactions of the Royal Society of London (A)
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Breeding systems and reproductive strategies in Italian Reticulitermes colonies (Isoptera: Rhinotermitidae)
inferredcites →https://doi.org/10.1007/s00114-008-0395-7openalex-snapshot
Genome size of termites (Insecta, Dictyoptera, Isoptera) and wood roaches (Insecta, Dictyoptera, Cryptocercidae)
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Methods in molecular biology
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Evolution of the P450 gene superfamily:
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Terpenes from the maritime pine Pinus pinaster: Toxins for subterranean termites of the genus Reticulitermes (Isoptera: Rhinotermitidae)?
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Draft genome sequence of the termite, Coptotermes formosanus: Genetic insights into the pyruvate dehydrogenase complex of the termite
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Lignocellulose degradation mechanisms across the Tree of Life
inferredcites →https://doi.org/10.1016/j.cois.2018.12.008openalex-snapshot
Detoxifying enzyme complements and host use phenotypes in 160 insect species
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The role of cytochrome P450-mediated detoxification in insect adaptation to xenobiotics
inferredcites →https://doi.org/10.1016/j.cub.2019.08.076openalex-snapshot
Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies
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Diversity and evolution of the P450 family in arthropods
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Drosophila Chemoreceptors: A Molecular Interface Between the Chemical World and the Brain
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Historical biogeography of Reticulitermes termites (Isoptera: Rhinotermitidae) inferred from analyses of mitochondrial and nuclear loci
inferredcites →https://doi.org/10.1017/s0007485313000400openalex-snapshot
Origin and evolution of the Italian subterranean termiteReticulitermes lucifugus(Blattodea, Termitoidae, Rhinotermitidae)
inferredcites →https://doi.org/10.1038/nature06850openalex-snapshot
Insect olfactory receptors are heteromeric ligand-gated ion channels
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/ncomms4636openalex-snapshot
Molecular traces of alternative social organization in a termite genome
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/s41559-017-0459-1openalex-snapshot
Hemimetabolous genomes reveal molecular basis of termite eusociality
inferredcites →https://doi.org/10.1038/s41592-021-01101-xopenalex-snapshot
Sensitive protein alignments at tree-of-life scale using DIAMOND
inferredcites →https://doi.org/10.1073/pnas.0306980101openalex-snapshot
CYP15A1, the cytochrome P450 that catalyzes epoxidation of methyl farnesoate to juvenile hormone III in cockroach corpora allata
inferredcites →https://doi.org/10.1073/pnas.0505858102openalex-snapshot
Eusociality: Origin and consequences
inferredcites →https://doi.org/10.1073/pnas.1107758108openalex-snapshot
Larval helpers and age polyethism in ambrosia beetles
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HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes
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RepeatModeler2 for automated genomic discovery of transposable element families
inferredcites →https://doi.org/10.1073/pnas.2025051118openalex-snapshot
Eusociality in snapping shrimps is associated with larger genomes and an accumulation of transposable elements
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Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus : Gene duplication facilitates social evolution
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Bulletin of the American Museum of Natural History
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clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
inferredcites →https://doi.org/10.1093/bioinformatics/btaa1022openalex-snapshot
CAFE 5 models variation in evolutionary rates among gene families
inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot
Gene prediction with a hidden Markov model and a new intron submodel
inferredcites →https://doi.org/10.1093/bioinformatics/btp084openalex-snapshot
TEclass—a tool for automated classification of unknown eukaryotic transposable elements
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btw663openalex-snapshot
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btw718openalex-snapshot
SINE_scan: an efficient tool to discover short interspersed nuclear elements (SINEs) in large-scale genomic datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btx153openalex-snapshot
GenomeScope: fast reference-free genome profiling from short reads
inferredcites →https://doi.org/10.1093/bioinformatics/btx304openalex-snapshot
KMC 3: counting and manipulating k -mer statistics
inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot
Minimap2: pairwise alignment for nucleotide sequences
inferredcites →https://doi.org/10.1093/gbe/evaa211openalex-snapshot
Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench
inferredcites →https://doi.org/10.1093/gbe/evu083openalex-snapshot
The Molecular Evolution of Cytochrome P450 Genes within and between Drosophila Species
inferredcites →https://doi.org/10.1093/gbe/evv149openalex-snapshot
Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality
inferredcites →https://doi.org/10.1093/gbe/evx149openalex-snapshot
The Evolutionary Dynamics of the Odorant Receptor Gene Family in Corbiculate Bees
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
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GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss
inferredcites →https://doi.org/10.1093/molbev/msab293openalex-snapshot
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
inferredcites →https://doi.org/10.1093/molbev/msp116openalex-snapshot
Large Gene Family Expansions and Adaptive Evolution for Odorant and Gustatory Receptors in the Pea Aphid, Acyrthosiphon pisum
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu308openalex-snapshot
The Evolutionary History of Termites as Inferred from 66 Mitochondrial Genomes
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Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses
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AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination
inferredcites →https://doi.org/10.1093/nargab/lqaa026openalex-snapshot
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
inferredcites →https://doi.org/10.1093/sysbio/sys078openalex-snapshot
Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice
inferredcites →https://doi.org/10.1093/sysbio/syv068openalex-snapshot
Fast Dating Using Least-Squares Criteria and Algorithms
inferredcites →https://doi.org/10.1098/rspb.2011.1030openalex-snapshot
Asexual queen succession in the subterranean termite Reticulitermes virginicus
inferredcites →https://doi.org/10.1098/rstb.2012.0428openalex-snapshot
Origins of P450 diversity
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.155408.113openalex-snapshot
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
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ALLPATHS: De novo assembly of whole-genome shotgun microreads
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MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
inferredcites →https://doi.org/10.1111/ens.12328openalex-snapshot
Economic and ecological importance of termites: A global review
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The insect chemoreceptor superfamily of the parasitoid jewel wasp Nasonia vitripennis
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BIOLOGICAL REVIEWS of the CAMBRIDGE PHILOSOPHICAL SOCIETY
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Life history and development ‐ a framework for understanding developmental plasticity in lower termites
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Proceedings of the National Academy of Sciences of the United States of America
inferredcites →https://doi.org/10.1111/mec.14348openalex-snapshot
Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation
inferredcites →https://doi.org/10.1111/syen.12548openalex-snapshot
Phylogeny, biogeography and classification of Teletisoptera (Blattaria: Isoptera)
inferredcites →https://doi.org/10.1126/science.1169702openalex-snapshot
Queen Succession Through Asexual Reproduction in Termites
inferredcites →https://doi.org/10.1126/science.aaa4788openalex-snapshot
Genomic signatures of evolutionary transitions from solitary to group living
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
inferredcites →https://doi.org/10.1186/1471-2105-5-59openalex-snapshot
Gene finding in novel genomes
inferredcites →https://doi.org/10.1186/1471-2164-14-604openalex-snapshot
L_RNA_scaffolder: scaffolding genomes with transcripts
inferredcites →https://doi.org/10.1186/1754-6834-2-25openalex-snapshot
Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes
inferredcites →https://doi.org/10.1186/s12859-018-2376-yopenalex-snapshot
MITE Tracker: an accurate approach to identify miniature inverted-repeat transposable elements in large genomes
inferredcites →https://doi.org/10.1186/s12864-018-4620-2openalex-snapshot
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees
inferredcites →https://doi.org/10.1186/s13059-019-1704-5openalex-snapshot
Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles
inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot
OrthoFinder: phylogenetic orthology inference for comparative genomics
inferredcites →https://doi.org/10.1186/s13059-019-1905-yopenalex-snapshot
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
inferredcites →https://doi.org/10.1186/s13100-015-0041-9openalex-snapshot
Repbase Update, a database of repetitive elements in eukaryotic genomes
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Treatise on the Isoptera of the World
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Evolution of the asexual queen succession system and its underlying mechanisms in termites
inferredcites →https://doi.org/10.12688/f1000research.12232.1openalex-snapshot
BlobTools: Interrogation of genome assemblies
inferredcites →https://doi.org/10.1371/journal.pone.0145596openalex-snapshot
Comparative Analysis of Transcriptomes from Secondary Reproductives of Three Reticulitermes Termite Species
inferredcites →https://doi.org/10.1534/genetics.107.080077openalex-snapshot
Accelerated Rate of Gene Gain and Loss in Primates
inferredcites →https://doi.org/10.3389/fgene.2015.00009openalex-snapshot
A genomic comparison of two termites with different social complexity
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Macrotermes natalensis genome assembly data.
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The origin of the odorant receptor gene family in insects

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Molecular phylogeny and morphology reveal two new entomopathogenic species of Ophiocordyceps (Ophiocordycipitaceae, Hypocreales) parasitic on termites from China
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Three new species of Ophiocordyceps (Hypocreales, Ophiocordycipitaceae) and a new host record for Hirsutella vermicola from China
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Insect Phylogenomics: From Experiment Planning to Post-phylogenetic Analyses
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Genomic signatures of eusocial evolution in insects
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Insecticide resistance in social insects: assumptions, realities, and possibilities
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Unravelling the evolution of wood-feeding in termites with 47 high-resolution genome assemblies
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Chromosome-level genome assembly and annotation of the termite Reticulitermes chinensis Snyder
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Genomic divergence of the Italian drywood termites Kalotermes italicus and K. flavicollis (Blattodea Kalotermitidae): insights from genome skimming
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Improved chromosome-level genome assembly of the American cockroach, Periplaneta americana
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Genomic Features Underlying the Origin of Sociality and the Diversification of Caste Systems in Termites
inferred← citeshttps://doi.org/10.1371/journal.pone.0299900openalex-snapshot
Candidate target genes of the male-specific expressed Doublesex in the termite Reticulitermes speratus
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Cannabis sativa L. Miniature Inverted-Repeat Transposable-Element Landscapes in Wild-Type (JL) and Domesticated Genome (CBDRx)
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Sociality and evolutionary convergence : the contribution of ecomorphological and transcriptomic data in cockroaches
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