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Biogeographic patterns of abundant and rare bacterial and microeukaryotic subcommunities in connected freshwater lake zones subjected to different levels of nutrient loading

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Contrasting patterns of diversity of abundant and rare bacterioplankton in freshwater lakes along an elevation gradient

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Eutrophication of Shallow Lakes with Special Reference to Lake Taihu, China

inferredcites →https://doi.org/10.1007/s00248-005-0049-7openalex-snapshot

Effect of Nutrient Loading on Bacterioplankton Community Composition in Lake Mesocosms

inferredcites →https://doi.org/10.1007/s00248-005-5010-2openalex-snapshot

Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution

inferredcites →https://doi.org/10.1007/s00253-012-4002-7openalex-snapshot

General and rare bacterial taxa demonstrating different temporal dynamic patterns in an activated sludge bioreactor

inferredcites →https://doi.org/10.1007/s00253-017-8327-0openalex-snapshot

The heterogeneity of composition and assembly processes of the microbial community between different nutrient loading lake zones in Taihu Lake

inferredcites →https://doi.org/10.1007/s00284-018-1541-xopenalex-snapshot

Mapping the Bacterial Community in Digboi Oil Refinery, India by High-Throughput Sequencing Approach

inferredcites →https://doi.org/10.1016/0006-3207(92)91201-3openalex-snapshot

Conservation evaluation and phylogenetic diversity

inferredcites →https://doi.org/10.1016/b978-0-444-53868-0.50018-6openalex-snapshot

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Patterns of Rare and Abundant Marine Microbial Eukaryotes

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Microbial Ecology: Finding Structure in the Rare Biosphere

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Patterns and assembly processes of planktonic and sedimentary bacterial community differ along a trophic gradient in freshwater lakes

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Quantifying community assembly processes and identifying features that impose them

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The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

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Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes

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Warming and nutrient enrichment in combination increase stochasticity and beta diversity of bacterioplankton assemblages across freshwater mesocosms

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Toward molecular trait‐based ecology through integration of biogeochemical, geographical and metagenomic data

inferredcites →https://doi.org/10.1038/nature07764openalex-snapshot

Phylogenetic biome conservatism on a global scale

inferredcites →https://doi.org/10.1038/nature08058openalex-snapshot

Microbial community structure and its functional implications

inferredcites →https://doi.org/10.1038/ncomms13960openalex-snapshot

Nutrient enrichment modifies temperature-biodiversity relationships in large-scale field experiments

inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

inferredcites →https://doi.org/10.1038/nmeth.2604openalex-snapshot

UPARSE: highly accurate OTU sequences from microbial amplicon reads

inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot

QIIME allows analysis of high-throughput community sequencing data

inferredcites →https://doi.org/10.1038/nrmicro1341openalex-snapshot

Microbial biogeography: putting microorganisms on the map

inferredcites →https://doi.org/10.1038/nrmicro2504openalex-snapshot

Microbial seed banks: the ecological and evolutionary implications of dormancy

inferredcites →https://doi.org/10.1038/nrmicro3549openalex-snapshot

Microbial ecology of Antarctic aquatic systems

inferredcites →https://doi.org/10.1038/s41598-018-28754-7openalex-snapshot

Enhanced GABAergic actions resulting from the coapplication of the steroid 3α-hydroxy-5α-pregnane-11,20-dione (alfaxalone) with propofol or diazepam

inferredcites →https://doi.org/10.1073/pnas.0908284106openalex-snapshot

Ecology of the rare microbial biosphere of the Arctic Ocean

inferredcites →https://doi.org/10.1073/pnas.0908816106openalex-snapshot

Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor

inferredcites →https://doi.org/10.1073/pnas.1101405108openalex-snapshot

Activity of abundant and rare bacteria in a coastal ocean

inferredcites →https://doi.org/10.1073/pnas.1216863110openalex-snapshot

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

inferredcites →https://doi.org/10.1093/bioinformatics/btp636openalex-snapshot

PyNAST: a flexible tool for aligning sequences to a template alignment

inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot

Search and clustering orders of magnitude faster than BLAST

inferredcites →https://doi.org/10.1093/bioinformatics/btr381openalex-snapshot

UCHIME improves sensitivity and speed of chimera detection

inferredcites →https://doi.org/10.1093/bioinformatics/btr507openalex-snapshot

FLASH: fast length adjustment of short reads to improve genome assemblies

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/femsec/fix062openalex-snapshot

Community composition and assembly processes of the free-living and particle-attached bacteria in Taihu Lake

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1098/rstb.2006.1924openalex-snapshot

The diversity of microbes: resurgence of the phenotype

inferredcites →https://doi.org/10.1111/1574-6941.12230openalex-snapshot

Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05437.xopenalex-snapshot

Cosmopolitanism of microbial eukaryotes in the global deep seas

inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01388.xopenalex-snapshot

Submersed macrophytes play a key role in structuring bacterioplankton community composition in the large, shallow, subtropical Taihu Lake, China

inferredcites →https://doi.org/10.1111/j.1462-2920.2008.01777.xopenalex-snapshot

Microbial eukaryotes in the hypersaline anoxic L'Atalante deep‐sea basin

inferredcites →https://doi.org/10.1111/jam.12323openalex-snapshot

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

inferredcites →https://doi.org/10.1128/aem.00298-09openalex-snapshot

Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology

inferredcites →https://doi.org/10.1128/aem.05117-11openalex-snapshot

Macrophyte Species Drive the Variation of Bacterioplankton Community Composition in a Shallow Freshwater Lake

inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

inferredcites →https://doi.org/10.1128/mbio.00584-12openalex-snapshot

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

inferredcites →https://doi.org/10.1128/mmbr.00002-17openalex-snapshot

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

inferredcites →https://doi.org/10.1146/annurev-marine-120710-100948openalex-snapshot

The Rare Bacterial Biosphere

inferredcites →https://doi.org/10.1186/1471-2180-13-150openalex-snapshot

Evidence for isolated evolution of deep-sea ciliate communities through geological separation and environmental selection

inferredcites →https://doi.org/10.1186/jbiol201openalex-snapshot

Mapping the protistan 'rare biosphere'

inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

inferredcites →https://doi.org/10.1371/journal.pone.0111988openalex-snapshot

HemI: A Toolkit for Illustrating Heatmaps

inferredcites →https://doi.org/10.3389/fmicb.2015.00370openalex-snapshot

Estimating and mapping ecological processes influencing microbial community assembly

inferredcites →https://doi.org/10.3389/fmicb.2016.01433openalex-snapshot

Phytoplankton-Associated Bacterial Community Composition and Succession during Toxic Diatom Bloom and Non-Bloom Events

inferredcites →https://doi.org/10.3390/w10081075openalex-snapshot

Abundant and Rare Bacterioplankton in Freshwater Lakes Subjected to Different Levels of Tourism Disturbances

inferredcites →https://doi.org/10.4319/lo.2001.46.2.0267openalex-snapshot

Microbial degradation of organic carbon and nitrogen on diatom aggregates

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Effects of wind-wave disturbance and nutrient addition on aquatic bacterial diversity, community composition, and co-occurrence patterns: A mesocosm study

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DNA metabarcoding reveals the significant influence of anthropogenic effects on microeukaryotic communities in urban waterbodies

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Cascade effects of nutrient input on river microeukaryotic stability: habitat heterogeneity-driven assembly mechanisms

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Bacterial community structure of rice wine from China's Xiaogan and Dazhou regions: Correlation with taste characteristics

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Nutrients Changed the Assembly Processes of Profuse and Rare Microbial Communities in Coals

inferred← citeshttps://doi.org/10.3390/w14121948openalex-snapshot

The Geochemical Drivers of Bacterial Community Diversity in the Watershed Sediments of the Heihe River (Northern China)

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Effectiveness of bacteriocin like inhibitory substance (BLIS) extracted from Lactobacilli spp. as anti-biofilm pathogenic bacteria and yeasts: an in vitro study

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