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Ongoing hybridization obscures phylogenetic relationships in the Drosophila subquinaria species complex

https://doi.org/10.1111/jeb.13512
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferreduses_data →https://doi.org/10.5281/zenodo.10723540zenodo-depositor-declared
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The Multispecies Coalescent
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Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life
inferredcites →https://doi.org/10.1002/ece3.477openalex-snapshot
Divergence of premating behaviors in the closely related species Drosophila subquinaria and D. recens
inferredcites →https://doi.org/10.1016/0277-3791(86)90189-7openalex-snapshot
Summary of Quaternary stratigraphy and history, Western Canada
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Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferredcites →https://doi.org/10.1016/j.ympev.2018.10.027openalex-snapshot
A phylogenetic examination of host use evolution in the quinaria and testacea groups of Drosophila
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The barrier to genetic exchange between hybridising populations
inferredcites →https://doi.org/10.1038/hdy.1995.140openalex-snapshot
Wolbachia and cytoplasmic incompatibility in mycophagous Drosophila and their relatives
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Making sense of genomic islands of differentiation in light of speciation
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The genic view of the process of speciation
inferredcites →https://doi.org/10.1073/pnas.081068098openalex-snapshot
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
inferredcites →https://doi.org/10.1073/pnas.1601066113openalex-snapshot
Reticulation, divergence, and the phylogeography–phylogenetics continuum
inferredcites →https://doi.org/10.1080/10635150390235520openalex-snapshot
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
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A New Statistical Method for Haplotype Reconstruction from Population Data
inferredcites →https://doi.org/10.1086/379378openalex-snapshot
A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/bti803openalex-snapshot
Comparison of Bayesian and maximum-likelihood inference of population genetic parameters
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/cz/zow005openalex-snapshot
Patterns of reproductive isolation in theDrosophila subquinariacomplex: can reinforced premating isolation cascade to other species?
inferredcites →https://doi.org/10.1093/molbev/msh137openalex-snapshot
Genome-Scale Phylogeny and the Detection of Systematic Biases
inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot
Testing for Ancient Admixture between Closely Related Populations
inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/nar/gkw1016openalex-snapshot
FlyBase at 25: looking to the future
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025604openalex-snapshot
Majority-rule reduced consensus trees and their use in bootstrapping
inferredcites →https://doi.org/10.1093/sysbio/46.3.523openalex-snapshot
Gene Trees in Species Trees
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/sys078openalex-snapshot
Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice
inferredcites →https://doi.org/10.1098/rspb.1991.0032openalex-snapshot
Sex chromosomes and speciation
inferredcites →https://doi.org/10.1111/evo.12118openalex-snapshot
MORE ACCURATE PHYLOGENIES INFERRED FROM LOW-RECOMBINATION REGIONS IN THE PRESENCE OF INCOMPLETE LINEAGE SORTING
inferredcites →https://doi.org/10.1111/evo.12335openalex-snapshot
REPRODUCTIVE CHARACTER DISPLACEMENT OF EPICUTICULAR COMPOUNDS AND THEIR CONTRIBUTION TO MATE CHOICE INDROSOPHILA SUBQUINARIAANDDROSOPHILA RECENS
inferredcites →https://doi.org/10.1111/evo.12515openalex-snapshot
Reinforcement shapes clines in female mate discrimination in Drosophila subquinaria
inferredcites →https://doi.org/10.1111/evo.12832openalex-snapshot
Irrational exuberance for resolved species trees
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb01143.xopenalex-snapshot
DESATURASE‐2 , ENVIRONMENTAL ADAPTATION, AND SEXUAL ISOLATION IN DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.1558-5646.1999.tb04529.xopenalex-snapshot
WOLBACHIAAND THE EVOLUTION OF REPRODUCTIVE ISOLATION BETWEENDROSOPHILA RECENSANDDROSOPHILA SUBQUINARIA
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00549.xopenalex-snapshot
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02732.xopenalex-snapshot
seqphase : a web tool for interconverting phase input/output files and fasta sequence alignments
inferredcites →https://doi.org/10.1111/jeb.12588openalex-snapshot
The evolution of reproductive isolation in theDrosophila yakubacomplex of species
inferredcites →https://doi.org/10.1111/mec.12601openalex-snapshot
Gene flow and the maintenance of species boundaries
inferredcites →https://doi.org/10.1111/mec.13557openalex-snapshot
A genomic perspective on hybridization and speciation
inferredcites →https://doi.org/10.1111/mec.14777openalex-snapshot
Evaluating genomic signatures of “the large X‐effect” during complex speciation
inferredcites →https://doi.org/10.1111/mec.14825openalex-snapshot
Fine‐scale geographic patterns of gene flow and reproductive character displacement inDrosophila subquinariaandDrosophila recens
inferredcites →https://doi.org/10.1111/mec.14828openalex-snapshot
Introduction: Sex chromosomes and speciation
inferredcites →https://doi.org/10.1134/s0013873809010126openalex-snapshot
A review of species of the Drosophila quinaria Loew species-group (Diptera Drosophilidae) of the Asian part of Russia and adjacent countries
inferredcites →https://doi.org/10.1186/s12862-015-0328-yopenalex-snapshot
Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis
inferredcites →https://doi.org/10.1371/journal.pbio.0040325openalex-snapshot
Asymmetrical Reinforcement and Wolbachia Infection in Drosophila
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot
Discordance of Species Trees with Their Most Likely Gene Trees
inferredcites →https://doi.org/10.1534/genetics.109.112532openalex-snapshot
Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations
inferredcites →https://doi.org/10.2307/3669511openalex-snapshot
New Species of the Quinaria Group of Drosophila (Diptera, Drosophilidae)
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.5281/zenodo.30938openalex-snapshot
EvobiR: Tools for comparative analyses and teaching evolutionary biology.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107510openalex-snapshot
Rapid diversification of the Variable Seedeater superspecies complex despite widespread gene flow
inferred← citeshttps://doi.org/10.1093/evolut/qpad236openalex-snapshot
An experimental test of the evolutionary consequences of sympatry in Drosophila subquinaria
inferred← citeshttps://doi.org/10.1093/gbe/evaf225openalex-snapshot
Comparative Genomics of the Testacea Group of Drosophila Reveals Introgression and Variation in Chromosome Size and Structure
inferred← citeshttps://doi.org/10.1093/genetics/iyaa025openalex-snapshot
The rates of introgression and barriers to genetic exchange between hybridizing species: sex chromosomes vs autosomes
inferred← citeshttps://doi.org/10.1093/jeb/voae145openalex-snapshot
Postmating prezygotic isolation occurs at two levels of divergence in Drosophila recens and D. subquinaria
inferred← citeshttps://doi.org/10.1093/molbev/msac206openalex-snapshot
Recurrent but Short-Lived Duplications of Centromeric Proteins in Holocentric Caenorhabditis Species
inferred← citeshttps://doi.org/10.1098/rstb.2019.0533openalex-snapshot
The importance of intrinsic postzygotic barriers throughout the speciation process
inferred← citeshttps://doi.org/10.1101/2020.11.13.382200openalex-snapshot
Andean uplift, drainage basin formation, and the evolution of riverweeds (Marathrum, Podostemaceae ) in northern South America
inferred← citeshttps://doi.org/10.1111/mec.15603openalex-snapshot
Gene flow creates a mirage of cryptic species in a Southeast Asian spotted stream frog complex
inferred← citeshttps://doi.org/10.1111/nph.17649openalex-snapshot
Andean uplift, drainage basin formation, and the evolution of plants living in fast‐flowing aquatic ecosystems in northern South America
inferred← citeshttps://doi.org/10.3390/biology11050640openalex-snapshot
The Floral Signals of the Inconspicuous Orchid Malaxis monophyllos: How to Lure Small Pollinators in an Abundant Environment
inferred← citeshttps://doi.org/10.64898/2026.09.29.754759openalex-snapshot
Fruit flies of the subgenera Drosophila , Siphlodora and Sophophora use different mechanisms to adapt their daily activity to long photoperiods
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