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Limited predictability of postmortem human brain tissue quality by RNA integrity numbers

https://doi.org/10.1111/jnc.13637
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1001/archpsyc.61.3.300openalex-snapshot
Molecular Evidence for Mitochondrial Dysfunction in Bipolar Disorder
inferredcites →https://doi.org/10.1001/jamapsychiatry.2015.49openalex-snapshot
Circuit- and Diagnosis-Specific DNA Methylation Changes at γ-Aminobutyric Acid–Related Genes in Postmortem Human Hippocampus in Schizophrenia and Bipolar Disorder
inferredcites →https://doi.org/10.1007/978-1-61779-163-5_28openalex-snapshot
Neuronal Type-Specific Gene Expression Profiling and Laser-Capture Microdissection
inferredcites →https://doi.org/10.1007/s00414-011-0578-1openalex-snapshot
RNA integrity in post-mortem samples: influencing parameters and implications on RT-qPCR assays
inferredcites →https://doi.org/10.1007/s10561-010-9210-8openalex-snapshot
Postmortem interval effect on RNA and gene expression in human brain tissue
inferredcites →https://doi.org/10.1007/s10561-011-9265-1openalex-snapshot
Histological assessment of cerebellar granule cell layer in postmortem brain; a useful marker of tissue integrity?
inferredcites →https://doi.org/10.1007/s11060-015-1772-7openalex-snapshot
Selection of suitable reference genes for expression analysis in human glioma using RT-qPCR
inferredcites →https://doi.org/10.1016/0165-0270(88)90189-6openalex-snapshot
The postmortem Alzheimer brain is a source of structurally and functionally intact astrocytic messenger RNA
inferredcites →https://doi.org/10.1016/j.biopsych.2006.06.019openalex-snapshot
Critical Factors in Gene Expression in Postmortem Human Brain: Focus on Studies in Schizophrenia
inferredcites →https://doi.org/10.1016/j.brainres.2006.09.025openalex-snapshot
Human postmortem tissue: What quality markers matter?
inferredcites →https://doi.org/10.1016/j.jneumeth.2007.06.001openalex-snapshot
Quality control for microarray analysis of human brain samples: The impact of postmortem factors, RNA characteristics, and histopathology
inferredcites →https://doi.org/10.1016/j.schres.2015.02.005openalex-snapshot
Altered prefrontal cortical MARCKS and PPP1R9A mRNA expression in schizophrenia and bipolar disorder
inferredcites →https://doi.org/10.1016/j.yexmp.2007.08.019openalex-snapshot
Assessing RNA quality in postmortem human brain tissue
inferredcites →https://doi.org/10.1016/s0079-6123(06)58001-xopenalex-snapshot
Tissue preparation and banking
inferredcites →https://doi.org/10.1016/s0079-6123(06)58008-2openalex-snapshot
Strategies for improving sensitivity of gene expression profiling: regulation of apoptosis in the limbic lobe of schizophrenics and bipolars
inferredcites →https://doi.org/10.1073/pnas.0703806104openalex-snapshot
Regulation of the GABA cell phenotype in hippocampus of schizophrenics and bipolars
inferredcites →https://doi.org/10.1073/pnas.0903066106openalex-snapshot
Site-specific regulation of cell cycle and DNA repair in post-mitotic GABA cells in schizophrenic versus bipolars
inferredcites →https://doi.org/10.1093/brain/awn323openalex-snapshot
Gene expression profiling of substantia nigra dopamine neurons: further insights into Parkinson's disease pathology
inferredcites →https://doi.org/10.1093/nar/gni054openalex-snapshot
Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces
inferredcites →https://doi.org/10.1111/j.1471-4159.1981.tb01689.xopenalex-snapshot
The Preparation of Biologically Active Messenger RNA from Human Postmortem Brain Tissue
inferredcites →https://doi.org/10.1111/j.1471-4159.2011.07432.xopenalex-snapshot
Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies
inferredcites →https://doi.org/10.1186/1471-2199-7-3openalex-snapshot
The RIN: an RNA integrity number for assigning integrity values to RNA measurements
inferredcites →https://doi.org/10.1186/1471-2199-9-46openalex-snapshot
Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue
inferredcites →https://doi.org/10.1371/journal.pone.0008856openalex-snapshot
Evidence for Gender-Specific Transcriptional Profiles of Nigral Dopamine Neurons in Parkinson Disease
inferredcites →https://doi.org/10.3109/01677063.2013.878339openalex-snapshot
Molecular Profiles of Parvalbumin-Immunoreactive Neurons in the Superior Temporal Cortex in Schizophrenia
inferredcites →https://doi.org/10.3109/01677063.2014.882918openalex-snapshot
Molecular Profiles of Pyramidal Neurons in the Superior Temporal Cortex in Schizophrenia
inferredcites →https://doi.org/10.3390/ijms12095461openalex-snapshot
Selection of Candidate Housekeeping Genes for Normalization in Human Postmortem Brain Samples

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4180064openalex-extracted
inferred← citeshttps://doi.org/10.1007/978-1-4939-7558-7_11openalex-snapshot
Cell Type-Specific Laser Capture Microdissection for Gene Expression Profiling in the Human Brain
inferred← citeshttps://doi.org/10.1007/s00429-020-02194-4openalex-snapshot
Optimization and evaluation of fluorescence in situ hybridization chain reaction in cleared fresh-frozen brain tissues
inferred← citeshttps://doi.org/10.1007/s12035-026-06033-1openalex-snapshot
Mitigating Fixation Artifacts in Spatial Transcriptomics: Methodological Insights from Human Brain Tissue
inferred← citeshttps://doi.org/10.1007/s12264-018-0309-4openalex-snapshot
Comparison of Reference Genes for Transcriptional Studies in Postmortem Human Brain Tissue Under Different Conditions
inferred← citeshttps://doi.org/10.1016/b978-0-12-819975-6.00007-8openalex-snapshot
Matching of the postmortem hypothalamus from patients and controls
inferred← citeshttps://doi.org/10.1016/b978-0-444-63639-3.00016-5openalex-snapshot
Considerations for optimal use of postmortem human brains for molecular psychiatry: lessons from schizophrenia
inferred← citeshttps://doi.org/10.1016/b978-0-444-63639-3.00018-9openalex-snapshot
Laser microdissection and gene expression profiling in the human postmortem brain
inferred← citeshttps://doi.org/10.1016/j.ajhg.2024.07.002openalex-snapshot
Cell-type-specific effects of autism-associated 15q duplication syndrome in the human brain
inferred← citeshttps://doi.org/10.1016/j.bonr.2022.101624openalex-snapshot
Isolating mineralized bone and bone marrow mRNA from transiliac bone biopsies stored in a stabilizing solution: A comparative study
inferred← citeshttps://doi.org/10.1016/j.heliyon.2019.e02254openalex-snapshot
The use of laser capture microdissection to identify specific pathways and mechanisms involved in impulsive choice in rats
inferred← citeshttps://doi.org/10.1016/j.isci.2024.110419openalex-snapshot
Integrity assay for messenger RNA in mouse and human brain samples and synaptosomal preparations
inferred← citeshttps://doi.org/10.1016/j.jad.2016.10.007openalex-snapshot
Dysregulation of IRAS/nischarin and other potential I 1 -imidazoline receptors in major depression postmortem brain: Downregulation of basal contents by antidepressant drug treatments
inferred← citeshttps://doi.org/10.1016/j.jad.2020.07.074openalex-snapshot
Regulation of cannabinoid CB1 and CB2 receptors, neuroprotective mTOR and pro-apoptotic JNK1/2 kinases in postmortem prefrontal cortex of subjects with major depressive disorder
inferred← citeshttps://doi.org/10.1016/j.psychres.2019.06.002openalex-snapshot
Major depressive disorder-associated SIRT1 locus affects the risk for suicide in women after middle age
inferred← citeshttps://doi.org/10.1038/mp.2017.89openalex-snapshot
Investigating the neuroimmunogenic architecture of schizophrenia
inferred← citeshttps://doi.org/10.1038/s41380-024-02420-zopenalex-snapshot
Brain and blood transcriptome profiles delineate common genetic pathways across suicidal ideation and suicide
inferred← citeshttps://doi.org/10.1038/s41431-025-01792-2openalex-snapshot
Beyond genomics: using RNA-seq from dried blood spots to unlock the clinical relevance of splicing variation in a diagnostic setting
inferred← citeshttps://doi.org/10.1038/s41598-020-69480-3openalex-snapshot
A glycomics and proteomics study of aging and Parkinson’s disease in human brain
inferred← citeshttps://doi.org/10.1073/pnas.1906817116openalex-snapshot
IL-37 is increased in brains of children with autism spectrum disorder and inhibits human microglia stimulated by neurotensin
inferred← citeshttps://doi.org/10.1073/pnas.2004666117openalex-snapshot
IL-38 inhibits microglial inflammatory mediators and is decreased in amygdala of children with autism spectrum disorder
inferred← citeshttps://doi.org/10.1080/19336896.2021.1946377openalex-snapshot
Upregulation of brain hepcidin in prion diseases
inferred← citeshttps://doi.org/10.1089/bio.2017.0099openalex-snapshot
Effect of Postmortem Interval and Years in Storage on RNA Quality of Tissue at a Repository of the NIH NeuroBioBank
inferred← citeshttps://doi.org/10.1093/brain/awaf452openalex-snapshot
Exploring the human brain: spatial transcriptomics challenges and approaches in post-mortem analysis
inferred← citeshttps://doi.org/10.1093/braincomms/fcae430openalex-snapshot
Impact of fixation duration on messenger RNA detectability in human formalin-fixed paraffin-embedded brain tissue
inferred← citeshttps://doi.org/10.1093/gerona/glad241openalex-snapshot
Altered Gene Expression Within the Renin–Angiotensin System in Normal Aging and Dementia
inferred← citeshttps://doi.org/10.1093/jnen/nlab129openalex-snapshot
Simultaneous Isolation of High-Quality RNA and DNA From Postmortem Human Central Nervous System Tissues for Omics Studies
inferred← citeshttps://doi.org/10.1101/2021.09.07.459326openalex-snapshot
Declining RNA integrity in control autopsy brain tissue is robustly and asymmetrically associated with selective neuronal mRNA signal loss
inferred← citeshttps://doi.org/10.1101/2024.09.30.615750openalex-snapshot
Unlocking the Potential of Low Quality Total RNA-seq Data: A Stepwise Mapping Approach for Improved Quantitative Analyses
inferred← citeshttps://doi.org/10.1167/iovs.65.12.13openalex-snapshot
DAMPs Drive Fibroinflammatory Changes in the Glaucomatous ONH
inferred← citeshttps://doi.org/10.1186/s12864-021-07381-zopenalex-snapshot
Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing
inferred← citeshttps://doi.org/10.1186/s12885-018-4906-4openalex-snapshot
A prospective clinical and biological database for pancreatic adenocarcinoma: the BACAP cohort
inferred← citeshttps://doi.org/10.1186/s13041-021-00805-7openalex-snapshot
Reductions in midbrain GABAergic and dopamine neuron markers are linked in schizophrenia
inferred← citeshttps://doi.org/10.1186/s13071-016-1795-8openalex-snapshot
The hookworm Ancylostoma ceylanicum intestinal transcriptome provides a platform for selecting drug and vaccine candidates
inferred← citeshttps://doi.org/10.1186/s40478-019-0756-9openalex-snapshot
Response to the Letter from Garcia-Montojo and colleagues concerning our paper entitled, Quantitative analysis of human endogenous retrovirus-K transcripts in postmortem premotor cortex fails to confirm elevated expression of HERV-K RNA in amyotrophic lateral sclerosis
inferred← citeshttps://doi.org/10.1186/s40478-023-01534-9openalex-snapshot
Different MAPT haplotypes influence expression of total MAPT in postmortem brain tissue
inferred← citeshttps://doi.org/10.1186/s44477-026-00036-xopenalex-snapshot
Spatial transcriptomics in Alzheimer's disease: technologies, challenges and discoveries
inferred← citeshttps://doi.org/10.14670/hh-18-135openalex-snapshot
Optimization of RNA extraction from laser captured microdissected glomeruli from formalin-fixed paraffin-embedded mouse kidney samples for Nanostring analysis.
inferred← citeshttps://doi.org/10.2217/epi-2022-0096openalex-snapshot
The Role of H3K9 Acetylation and Gene Expression in Different Brain Regions of Alzheimer’s Disease Patients
inferred← citeshttps://doi.org/10.3233/jad-210221openalex-snapshot
Upregulation of Local Hepcidin Contributes to Iron Accumulation in Alzheimer’s Disease Brains
inferred← citeshttps://doi.org/10.3390/ijms23137067openalex-snapshot
Transcriptome Profiling of the Dorsomedial Prefrontal Cortex in Suicide Victims
inferred← citeshttps://doi.org/10.4155/bio-2022-0190openalex-snapshot
Understanding quantitative polymerase chain reaction bioanalysis issues before validation planning: Japan Bioanalysis Forum discussion group
inferred← citeshttps://doi.org/10.6084/m9.figshare.13627108openalex-snapshot
Additional file 2 of Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.14853387openalex-snapshot
Additional file 1 of Reductions in midbrain GABAergic and dopamine neuron markers are linked in schizophrenia
inferred← citeshttps://doi.org/10.6084/m9.figshare.26574607openalex-snapshot
Additional file 1 of Different MAPT haplotypes influence expression of total MAPT in postmortem brain tissue
inferred← citeshttps://doi.org/10.6084/m9.figshare.26574610openalex-snapshot
Additional file 2 of Different MAPT haplotypes influence expression of total MAPT in postmortem brain tissue
inferred← citeshttps://doi.org/10.64898/2026.04.24.26351405openalex-snapshot
Ancestry-specific immune signatures in Parkinson’s disease: a rare variant burden analysis in Montreal and Guadeloupe cohorts
inferred← citeshttps://doi.org/10.64898/2026.05.28.726378openalex-snapshot
Polysome Profiling Method for Low-Input Human Postmortem Brain
inferred← citeshttps://doi.org/10.7150/ijms.65343openalex-snapshot
RNA isolation from micro-quantity of articular cartilage for quantitative gene expression by microarray analysis
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