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Analysis of the complete plastomes of three species of Membranoptera (Ceramiales, Rhodophyta) from Pacific North America

https://doi.org/10.1111/jpy.12472
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142727.mb1910s89openalex-snapshot
Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists
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Comparative Analysis of the Complete Plastid Genome Sequence of the Red Alga Gracilaria tenuistipitata var. liui Provides Insights into the Evolution of Rhodoplasts and Their Relationship to Other Plastids
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Marine algae of California
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ITS1 sequences of type specimens of Gigartina and Sarcothalia and their significance for the classification of South African Gigartinaceae (Gigartinales, Rhodophyta)
inferredcites →https://doi.org/10.1038/nbt0706-801openalex-snapshot
Open software for biologists: from famine to feast
inferredcites →https://doi.org/10.1038/srep05113openalex-snapshot
Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
inferredcites →https://doi.org/10.1038/srep23744openalex-snapshot
Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes
inferredcites →https://doi.org/10.1046/j.1529-8817.2001.01012.xopenalex-snapshot
SYSTEMATICS OF THE DELESSERIACEAE (CERAMIALES, RHODOPHYTA) BASED ON LARGE SUBUNIT rDNA AND rbcL SEQUENCES, INCLUDING THE PHYCODRYOIDEAE, SUBFAM. NOV.
inferredcites →https://doi.org/10.1046/j.1529-8817.2001.01048.xopenalex-snapshot
SOLVING TAXONOMIC AND NOMENCLATURAL PROBLEMS IN PACIFIC GIGARTINACEAE (RHODOPHYTA) USING DNA FROM TYPE MATERIAL
inferredcites →https://doi.org/10.1080/09670262.2012.719164openalex-snapshot
Molecular phylogeny and developmental studies ofApoglossumandParaglossum(Delesseriaceae, Rhodophyta) with a description of Apoglosseaetrib. nov.
inferredcites →https://doi.org/10.1080/23802359.2015.1137792openalex-snapshot
The complete chloroplast genome of Gracilariopsis lemaneiformis, an important economic red alga of the family Gracilariaceae
inferredcites →https://doi.org/10.1080/23802359.2016.1182452openalex-snapshot
Mitochondrial and plastid genome analysis of the marine red alga Coeloseira compressa (Champiaceae, Rhodophyta)
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gki366openalex-snapshot
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
inferredcites →https://doi.org/10.1093/nar/gkm160openalex-snapshot
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/nar/gkn180openalex-snapshot
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.4086505openalex-snapshot
Galaxy: A platform for interactive large-scale genome analysis
inferredcites →https://doi.org/10.1111/j.0908-8857.2004.03297.xopenalex-snapshot
Glacial history and colonization of Europe by the blue tit Parus caeruleus
inferredcites →https://doi.org/10.1111/j.1440-1835.2008.00491.xopenalex-snapshot
On the absence of previously reported Japanese and Peruvian species of Prionitis (Halymeniaceae, Rhodophyta) in the northeast Pacific
inferredcites →https://doi.org/10.1111/j.1529-8817.2012.01190.xopenalex-snapshot
CHIHARAEA AND YAMADAIA (CORALLINALES, RHODOPHYTA) REPRESENT REDUCED AND RECENTLY DERIVED ARTICULATED CORALLINE MORPHOLOGIES1
inferredcites →https://doi.org/10.1111/jpy.12205openalex-snapshot
Misleading morphologies and the importance of sequencing type specimens for resolving coralline taxonomy ( C orallinales, R hodophyta): P achyarthron cretaceum is C orallina officinalis
inferredcites →https://doi.org/10.1111/jpy.12266openalex-snapshot
DNA sequencing, anatomy, and calcification patterns support a monophyletic, subarctic, carbonate reef‐forming Clathromorphum (Hapalidiaceae, Corallinales, Rhodophyta)
inferredcites →https://doi.org/10.1111/jpy.12283openalex-snapshot
The ghost plastid of Choreocolax polysiphoniae
inferredcites →https://doi.org/10.1111/jpy.12297openalex-snapshot
The plastid genome of the red alga Laurencia
inferredcites →https://doi.org/10.1111/jpy.12319openalex-snapshot
Sequencing type material resolves the identity and distribution of the generitype Lithophyllum incrustans, and related European species L. hibernicum and L. bathyporum (Corallinales, Rhodophyta)
inferredcites →https://doi.org/10.1111/jpy.12406openalex-snapshot
The complete chloroplast genome of Gracilariopsis lemaneiformis (Rhodophyta) gives new insight into the evolution of family Gracilariaceae
inferredcites →https://doi.org/10.1126/science.1065889openalex-snapshot
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
inferredcites →https://doi.org/10.1139/b2012-102openalex-snapshot
Comment on “Acquiring DNA sequence data from dried archival red algae (Florideophyceae) for the purpose of applying available names to contemporary genetic species: a critical assessment” 1Appears in Botany 90(3): 191–203. doi:10.1139/b11-079.
inferredcites →https://doi.org/10.11646/phytotaxa.190.1.18openalex-snapshot
Mesophyllum erubescens (Corallinales, Rhodophyta)—so many species in one epithet
inferredcites →https://doi.org/10.1186/gb-2008-9-3-r55openalex-snapshot
Genome assembly forensics: finding the elusive mis-assembly
inferredcites →https://doi.org/10.1186/gb-2010-11-8-r86openalex-snapshot
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
inferredcites →https://doi.org/10.1371/journal.pone.0011147openalex-snapshot
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
inferredcites →https://doi.org/10.1371/journal.pone.0059001openalex-snapshot
Evolution of Red Algal Plastid Genomes: Ancient Architectures, Introns, Horizontal Gene Transfer, and Taxonomic Utility of Plastid Markers
inferredcites →https://doi.org/10.1371/journal.pone.0068246openalex-snapshot
The Plastid Genome of the Red Macroalga Grateloupia taiwanensis (Halymeniaceae)
inferredcites →https://doi.org/10.2216/04-43.1openalex-snapshot
Molecular Sequencing of Northeast Pacific Type Material Reveals Two Earlier Names for Prionitis Lyallii, Prionitis Jubata and Prionitis Sternbergii, with Brief Comments on Grateloupia Versicolor (Halymeniaceae, Rhodophyta)
inferredcites →https://doi.org/10.2216/07-06.1openalex-snapshot
Morphological and molecular systematic study of Chondracanthus (Gigartinaceae, Rhodophyta) from Pacific North America
inferredcites →https://doi.org/10.2216/10-38.1openalex-snapshot
New, resurrected and redefined species ofMastocarpus(Phyllophoraceae, Rhodophyta) from the northeast Pacific
inferredcites →https://doi.org/10.2216/10-42.1openalex-snapshot
Morphometric and molecular analyses confirm two distinct species of Calliarthron (Corallinales, Rhodophyta), a genus endemic to the northeast Pacific
inferredcites →https://doi.org/10.2216/13-222.1openalex-snapshot
Highly conserved organellar genomes in the Gracilariales as inferred using new data from the Hawaiian invasive alga Gracilaria salicornia (Rhodophyta)
inferredcites →https://doi.org/10.2216/13-239.1openalex-snapshot
Molecular-assisted alpha taxonomy reveals pseudocryptic diversity among species ofBossiella(Corallinales, Rhodophyta) in the eastern Pacific Ocean
inferredcites →https://doi.org/10.2216/14-077.1openalex-snapshot
Sequencing of historic and modern specimens reveals cryptic diversity in Nothogenia (Scinaiaceae, Rhodophyta)
inferredcites →https://doi.org/10.2216/15-38.1openalex-snapshot
DNA sequencing resolves species ofSpongites(Corallinales, Rhodophyta) in the Northeast Pacific and South Africa, includingS. agulhensis sp. nov.
inferredcites →https://doi.org/10.2216/i0031-8884-33-3-187.1openalex-snapshot
Phylogenetic relationships of some European Gelidium (Gelidiales, Rhodophyta) species, based on rbcL nucleotide sequence analysis
inferredcites →https://doi.org/10.3732/ajb.1500308openalex-snapshot
Resolving cryptic species of Bossiella (Corallinales, Rhodophyta) using contemporary and historical DNA
inferredcites →https://doi.org/10.3897/phytokeys.52.5009openalex-snapshot
Four new species of Pyropia (Bangiales, Rhodophyta) from the west coast of North America: the Pyropia lanceolata species complex updated
inferredcites →https://doi.org/10.4490/algae.2012.27.3.155openalex-snapshot
Taxonomic assessment of North American species of the genera Cumathamnion, Delesseria, Membranoptera and Pantoneura (Delesseriaceae, Rhodophyta) using molecular data
inferredcites →https://doi.org/10.5962/bhl.title.60223openalex-snapshot
Algae of Northwestern America

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.489.1.5zenodo-depositor-declared
Genetic investigation of three type specimens of Osmundea (Rhodomelaceae, Rhodophyta) from the Gulf of California, Mexico and California, USA
inferred← citeshttps://doi.org/10.1016/j.rsma.2024.103807openalex-snapshot
Morphological and molecular characterization of the green algae Ulva in the Mediterranean Coast of Egypt
inferred← citeshttps://doi.org/10.1080/00318884.2018.1542851openalex-snapshot
A taxonomic reassessment of Caulerpa (Chlorophyta, Caulerpaceae) in southern Australia, based on tuf A and rbc L sequence data
inferred← citeshttps://doi.org/10.1080/09670262.2017.1402373openalex-snapshot
SNPs reveal geographical population structure of Corallina officinalis (Corallinaceae, Rhodophyta)
inferred← citeshttps://doi.org/10.1080/09670262.2018.1441446openalex-snapshot
High-throughput sequencing for algal systematics
inferred← citeshttps://doi.org/10.1080/23802359.2021.1920489openalex-snapshot
Complete plastid genome ofCumathamnion serrulatum(Ceramiales, Rhodophyta)
inferred← citeshttps://doi.org/10.1099/mic.0.000788openalex-snapshot
Building the GreenCut2 suite of proteins to unmask photosynthetic function and regulation
inferred← citeshttps://doi.org/10.1111/jpy.12488openalex-snapshot
Genetic and morphological variation in an ecosystem engineer,Lithophyllum byssoides(Corallinales, Rhodophyta)
inferred← citeshttps://doi.org/10.1111/jpy.12761openalex-snapshot
Genomics reveals abundant speciation in the coral reef building alga Porolithon onkodes (Corallinales, Rhodophyta)
inferred← citeshttps://doi.org/10.1111/jpy.12802openalex-snapshot
Phylogenomics and multigene phylogenies decipher two new cryptic marine algae from California, Gelidium gabrielsonii and G. kathyanniae (Gelidiales, Rhodophyta)
inferred← citeshttps://doi.org/10.1111/jpy.13402openalex-snapshot
Resolving the taxonomy of thePolysiphonia scopulorumcomplex and theBryocladialineage (Rhodomelaceae, Rhodophyta)
inferred← citeshttps://doi.org/10.1111/jpy.70153openalex-snapshot
DNA sequencing of type material of Polyopes constrictus and Dermocorynus occidentalis (Halymeniales, Rhodophyta) supports Polyopes capensis sp. nov. and Polyopes occidentalis (Hollenberg) comb. nov.
inferred← citeshttps://doi.org/10.1371/journal.pone.0196995openalex-snapshot
Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats
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