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Comparative Transcriptome Analysis Reveals Candidate Genes Related to Structural and Storage Carbohydrate Biosynthesis in Kelp Saccharina japonica (Laminariales, Phaeophyceae)

https://doi.org/10.1111/jpy.13016
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cbdv.201100266openalex-snapshot
Structural Characteristics and Biological Activity of Fucoidans from the Brown Algae Alaria sp. and Saccharina japonica of Different Reproductive Status
inferredcites →https://doi.org/10.1002/jctb.2372openalex-snapshot
Bacterial biosynthesis of alginates
inferredcites →https://doi.org/10.1002/jctb.5000670410openalex-snapshot
Methods for the routine estimation of mannitol, alginic acid, and combined fucose in seaweeds
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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
inferredcites →https://doi.org/10.1007/978-3-642-28451-9_2openalex-snapshot
Morpho-functionality of Carbon Metabolism in Seaweeds
inferredcites →https://doi.org/10.1007/978-3-642-53971-8_22openalex-snapshot
Cell Wall Polysaccharides of Marine Algae
inferredcites →https://doi.org/10.1007/978-94-011-4449-0_49openalex-snapshot
Monthly changes in the content of fucans, their constituent sugars and sulphate in cultured Laminaria japonica
inferredcites →https://doi.org/10.1007/978-94-011-4449-0_64openalex-snapshot
Direct determination of alginate content in brown algae by near infra-red (NIR) spectroscopy
inferredcites →https://doi.org/10.1007/s00294-017-0733-4openalex-snapshot
Functional genomics analysis reveals the biosynthesis pathways of important cellular components (alginate and fucoidan) of Saccharina
inferredcites →https://doi.org/10.1007/s00425-010-1295-6openalex-snapshot
Mannitol-1-phosphate dehydrogenase activity in Ectocarpus siliculosus, a key role for mannitol synthesis in brown algae
inferredcites →https://doi.org/10.1007/s10126-011-9413-4openalex-snapshot
Comparative Study of Polysaccharides from Reproductive and Sterile Tissues of Five Brown Seaweeds
inferredcites →https://doi.org/10.1007/s10811-006-9120-0openalex-snapshot
Trait evaluation and trial cultivation of Dongfang No. 2, the hybrid of a male gametophyte clone of Laminaria longissima (Laminariales, Phaeophyta) and a female one of L. japonica
inferredcites →https://doi.org/10.1007/s10811-007-9303-3openalex-snapshot
Alginate, mannitol, phenolic compounds and biological activities of two range-extending brown algae, Sargassum mangarevense and Turbinaria ornata (Phaeophyta: Fucales), from Tahiti (French Polynesia)
inferredcites →https://doi.org/10.1007/s10811-014-0327-1openalex-snapshot
The seasonal variation in the chemical composition of the kelp species Laminaria digitata, Laminaria hyperborea, Saccharina latissima and Alaria esculenta
inferredcites →https://doi.org/10.1007/s10811-015-0562-0openalex-snapshot
Breeding of an intraspecific kelp hybrid Dongfang no. 6 (Saccharina japonica, Phaeophyceae, Laminariales) for suitable processing products and evaluation of its culture performance
inferredcites →https://doi.org/10.1007/s10811-015-0563-zopenalex-snapshot
Chemical characterization and quantification of the brown algal storage compound laminarin — A new methodological approach
inferredcites →https://doi.org/10.1007/s10811-015-0738-7openalex-snapshot
Molecular cloning, characterization, and comparison of UDP-glucose pyrophosphorylase from Gracilaria chouae and Saccharina japonica
inferredcites →https://doi.org/10.1007/s10811-017-1204-5openalex-snapshot
Crude fucoidan content in two North Atlantic kelp species, Saccharina latissima and Laminaria digitata—seasonal variation and impact of environmental factors
inferredcites →https://doi.org/10.1007/s10811-018-1460-zopenalex-snapshot
Molecular characterisation and biochemical properties of phosphomannomutase/phosphoglucomutase (PMM/PGM) in the brown seaweed Saccharina japonica
inferredcites →https://doi.org/10.1007/s10811-019-1753-xopenalex-snapshot
Monthly variations of fucoidan content and its composition in the farmed brown alga Saccharina sculpera (Laminariales, Phaeophyceae)
inferredcites →https://doi.org/10.1007/s11033-013-2888-5openalex-snapshot
A trehalose-6-phosphate synthase gene from Saccharina japonica (Laminariales, Phaeophyceae)
inferredcites →https://doi.org/10.1007/s11172-005-0395-0openalex-snapshot
Polysaccharides of Algae 58. The polysaccharide composition of the Pacific brown alga Alaria fistulosa P. et R. (Alariaceae, Laminariales)
inferredcites →https://doi.org/10.1016/j.algal.2018.03.012openalex-snapshot
Seasonal and depth variations in the chemical composition of cultivated Saccharina latissima
inferredcites →https://doi.org/10.1016/j.apenergy.2012.07.031openalex-snapshot
Recent advances in liquid biofuel production from algal feedstocks
inferredcites →https://doi.org/10.1016/j.biomaterials.2012.01.007openalex-snapshot
Alginate derivatization: A review of chemistry, properties and applications
inferredcites →https://doi.org/10.1016/j.biortech.2010.06.152openalex-snapshot
Seasonal variation in the chemical composition of the bioenergy feedstock Laminaria digitata for thermochemical conversion
inferredcites →https://doi.org/10.1016/j.biortech.2015.06.130openalex-snapshot
Production of hydrogen, ethanol and volatile fatty acids from the seaweed carbohydrate mannitol
inferredcites →https://doi.org/10.1016/j.carbpol.2017.07.082openalex-snapshot
A review about brown algal cell walls and fucose-containing sulfated polysaccharides: Cell wall context, biomedical properties and key research challenges
inferredcites →https://doi.org/10.1016/j.jfca.2010.08.004openalex-snapshot
Seasonal variation in the chemical composition of a marine brown alga, Sargassum horneri (Turner) C. Agardh
inferredcites →https://doi.org/10.1016/j.phytochem.2015.07.015openalex-snapshot
Molecular and biochemical characterization of mannitol-1-phosphate dehydrogenase from the model brown alga Ectocarpus sp.
inferredcites →https://doi.org/10.1016/j.progpolymsci.2011.06.003openalex-snapshot
Alginate: Properties and biomedical applications
inferredcites →https://doi.org/10.1016/j.tibtech.2012.10.009openalex-snapshot
Marine macroalgae: an untapped resource for producing fuels and chemicals
inferredcites →https://doi.org/10.1016/s1360-1385(99)01446-6openalex-snapshot
Trehalose metabolism in plants
inferredcites →https://doi.org/10.1023/a:1008024009954openalex-snapshot
Direct determination of alginate content in brown algae by near infra-red (NIR) spectroscopy
inferredcites →https://doi.org/10.1023/a:1017007623005openalex-snapshot
Monthly changes in the content of fucans, their constituent sugars and sulphate in cultured Laminaria japonica
inferredcites →https://doi.org/10.1038/nature09016openalex-snapshot
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
inferredcites →https://doi.org/10.1038/nature12771openalex-snapshot
Efficient ethanol production from brown macroalgae sugars by a synthetic yeast platform
inferredcites →https://doi.org/10.1038/nbt.3122openalex-snapshot
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nprot.2012.016openalex-snapshot
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
inferredcites →https://doi.org/10.1038/srep21255openalex-snapshot
Improving seedless kelp (Saccharina japonica) during its domestication by hybridizing gametophytes and seedling-raising from sporophytes
inferredcites →https://doi.org/10.1074/jbc.m111.230979openalex-snapshot
Characterization of GDP-mannose Dehydrogenase from the Brown Alga Ectocarpus siliculosus Providing the Precursor for the Alginate Polymer
inferredcites →https://doi.org/10.1093/aob/mcu096openalex-snapshot
Chemical and enzymatic fractionation of cell walls from Fucales: insights into the structure of the extracellular matrix of brown algae
inferredcites →https://doi.org/10.1093/bioinformatics/btm091openalex-snapshot
Enhancements and modifications of primer design program Primer3
inferredcites →https://doi.org/10.1093/bioinformatics/btp612openalex-snapshot
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
inferredcites →https://doi.org/10.1093/jxb/38.9.1573openalex-snapshot
Isolation and Analysis of the Cell Walls of Brown Algae:Fucus spiralis, F. ceranoides, F. vesiculosus, F. serratus, Bifurcaria bifurcataandLaminaria digitata
inferredcites →https://doi.org/10.1093/jxb/ert405openalex-snapshot
Mannitol metabolism in brown algae involves a new phosphatase family
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/nar/gkm391openalex-snapshot
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
inferredcites →https://doi.org/10.1093/nar/gks596openalex-snapshot
Primer3—new capabilities and interfaces
inferredcites →https://doi.org/10.1104/pp.62.1.49openalex-snapshot
Longitudinal Profiles of Carbon Dioxide Fixation Capacities in Marine Macroalgae
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04161.xopenalex-snapshot
Arabidopsis – a powerful model system for plant cell wall research
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03345.xopenalex-snapshot
Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus : insights into the origin and evolution of storage carbohydrates in Eukaryotes
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03374.xopenalex-snapshot
The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes
inferredcites →https://doi.org/10.1126/science.1214547openalex-snapshot
An Engineered Microbial Platform for Direct Biofuel Production from Brown Macroalgae
inferredcites →https://doi.org/10.1134/s1063074015030098openalex-snapshot
Fucoidans of brown algae: Biosynthesis, localization, and physiological role in thallus
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/s12864-019-6366-xopenalex-snapshot
Transcriptome sequencing of Saccharina japonica sporophytes during whole developmental periods reveals regulatory networks underlying alginate and mannitol biosynthesis
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1371/journal.pone.0097935openalex-snapshot
Characterization of Mannitol-2-Dehydrogenase in Saccharina japonica: Evidence for a New Polyol-Specific Long-Chain Dehydrogenases/Reductase
inferredcites →https://doi.org/10.2216/i0031-8884-40-4-351.1openalex-snapshot
Expression of carboxylating enzymes in Laminaria setchellii (Phaeophyceae)
inferredcites →https://doi.org/10.3354/meps027277openalex-snapshot
In situ growth and chemical composition of the giant kelp, Macrocystis pyrifera: response to temporal changes in ambient nutrient availability
inferredcites →https://doi.org/10.3390/md13010076openalex-snapshot
Sulfated Galactofucan from the Brown Alga Saccharina latissima—Variability of Yield, Structural Composition and Bioactivity
inferredcites →https://doi.org/10.3724/sp.j.1002.2008.08060openalex-snapshot
An overview of the phylogeny and diversity of eukaryotes
inferredcites →https://doi.org/10.46429/jaupr.v67i4.7741openalex-snapshot
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4865594openalex-extracted
Efficient and Environmentally Friendly Purification of Phlorotannins Using an Ethanol-Salt Aqueous Two-Phase System
inferred← citeshttps://doi.org/10.1002/ece3.71455openalex-snapshot
Northern Norway Sporophytes of Saccharina latissima Display Distinct Gene Expression Profiles in Response to Temperature and Photoperiod
inferred← citeshttps://doi.org/10.1007/978-3-031-42026-9_12openalex-snapshot
Omics Approaches for Algal Applications
inferred← citeshttps://doi.org/10.1007/s10811-025-03616-8openalex-snapshot
Iron limitation responses of the brown alga Saccharina japonica var. religiosa revealed by transcriptome analysis
inferred← citeshttps://doi.org/10.1007/s10811-026-03945-2openalex-snapshot
Review on polysaccharide sulfotransferases (PSTs) and their role in the synthesis of sulfated polysaccharides (SPs) in marine macroalgae
inferred← citeshttps://doi.org/10.1016/j.algal.2022.102883openalex-snapshot
Transcriptome analysis reveals the spatial and temporal differentiation of gene expression in the sporophyte of Undaria pinnatifida
inferred← citeshttps://doi.org/10.1016/j.algal.2025.104106openalex-snapshot
Effects of cultivar selection, cultivation region and harvest timing on the structure and properties of carbohydrates from Saccharina japonica
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2026.744346openalex-snapshot
Net primary production of cultivated Saccharina japonica (Laminariales) as an indicator of carbon dioxide removal potential in seaweed aquaculture
inferred← citeshttps://doi.org/10.1016/j.fbp.2024.12.011openalex-snapshot
High-efficiency and eco-friendly extraction of brown algal polyphenols using an optimized alcohol-salt aqueous two-phase system
inferred← citeshttps://doi.org/10.1111/1365-2435.14017openalex-snapshot
Amino acid δ 13 C fingerprints of nearshore marine autotrophs are consistent across broad spatiotemporal scales: An intercontinental isotopic dataset and likely biochemical drivers
inferred← citeshttps://doi.org/10.1111/jpy.13108openalex-snapshot
Exploring Core Response Mechanisms to Multiple Environmental Stressors Via A Genome‐Wide Study in the Brown Alga Saccharina japonica (Laminariales, Phaeophyceae)
inferred← citeshttps://doi.org/10.1186/s12864-025-11928-9openalex-snapshot
Identification, characterization and expression analysis of the CDPK family in kelp Saccharina japonica
inferred← citeshttps://doi.org/10.3389/fmars.2023.1117926openalex-snapshot
How do epiphytic and surrounding seawater bacterial communities shift with the development of the Saccharina japonica farmed in the Northern China?
inferred← citeshttps://doi.org/10.3389/fpls.2024.1417582openalex-snapshot
Identification of differential gene expression related to reproduction in the sporophytes of Saccharina japonica
inferred← citeshttps://doi.org/10.3389/fpls.2026.1812032openalex-snapshot
Genome-wide identification and expression analysis of the CA gene family in brown algae Saccharina sculpera
inferred← citeshttps://doi.org/10.3389/fvets.2021.677045openalex-snapshot
Comparative Transcriptome Analyses of the Developmental Stages of Taenia multiceps
inferred← citeshttps://doi.org/10.3390/nu14204400openalex-snapshot
Proteomics Characterization of Food-Derived Bioactive Peptides with Anti-Allergic and Anti-Inflammatory Properties
inferred← citeshttps://doi.org/10.3390/plants12101934openalex-snapshot
Genome-Wide Identification and Expression Analysis of Calmodulin (CaM) and Calmodulin-Like (CML) Genes in the Brown Algae Saccharina japonica
inferred← citeshttps://doi.org/10.70675/ee3a6114z2fc7z4a55za06ezf5dde2189425openalex-snapshot
Multiscale Analysis of Life Cycle Gene Expression Regulation in Brown Algae
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