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Phylogenomic data exploration with increased sampling provides new insights into the higher‐level relationships of butterflies and moths (Lepidoptera)

https://doi.org/10.1111/jse.13180
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.5425openalex-snapshot
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inferredcites →https://doi.org/10.1007/pl00006471openalex-snapshot
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inferredcites →https://doi.org/10.1007/s13127-015-0236-4openalex-snapshot
New animal phylogeny: future challenges for animal phylogeny in the age of phylogenomics
inferredcites →https://doi.org/10.1016/j.cell.2022.06.014openalex-snapshot
HGT is widespread in insects and contributes to male courtship in lepidopterans
inferredcites →https://doi.org/10.1016/j.cub.2018.03.064openalex-snapshot
Phylogenomics, Diversification Dynamics, and Comparative Transcriptomics across the Spider Tree of Life
inferredcites →https://doi.org/10.1016/j.gene.2018.02.037openalex-snapshot
Patterns and effects of GC3 heterogeneity and parsimony informative sites on the phylogenetic tree of genes
inferredcites →https://doi.org/10.1016/j.gene.2022.146516openalex-snapshot
Comparative mitochondrial genome analysis and phylogenetic relationship among lepidopteran species
inferredcites →https://doi.org/10.1016/j.pld.2024.05.002openalex-snapshot
Progress in systematics and biogeography of Orchidaceae
inferredcites →https://doi.org/10.1016/j.ympev.2008.04.011openalex-snapshot
Molecular phylogeny of the Tylenchina and evolution of the female gonoduct (Nematoda: Rhabditida)
inferredcites →https://doi.org/10.1016/j.ympev.2011.12.007openalex-snapshot
Applications of next-generation sequencing to phylogeography and phylogenetics
inferredcites →https://doi.org/10.1016/j.ympev.2014.07.020openalex-snapshot
Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae
inferredcites →https://doi.org/10.1038/18592openalex-snapshot
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inferredcites →https://doi.org/10.1038/387489a0openalex-snapshot
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inferredcites →https://doi.org/10.1038/nature11631openalex-snapshot
The global diversity of birds in space and time
inferredcites →https://doi.org/10.1038/nature12130openalex-snapshot
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inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nrg1603openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41559-020-1239-xopenalex-snapshot
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inferredcites →https://doi.org/10.1038/s41559-023-02041-9openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41576-020-0233-0openalex-snapshot
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inferredcites →https://doi.org/10.1073/pnas.1907847116openalex-snapshot
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inferredcites →https://doi.org/10.1080/10635150390235494openalex-snapshot
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inferredcites →https://doi.org/10.1080/10635150500221028openalex-snapshot
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inferredcites →https://doi.org/10.1080/10635150500234583openalex-snapshot
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inferredcites →https://doi.org/10.1080/10635150500354928openalex-snapshot
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inferredcites →https://doi.org/10.1080/10635150600697358openalex-snapshot
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inferredcites →https://doi.org/10.1080/106351598260996openalex-snapshot
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inferredcites →https://doi.org/10.1080/106351598261021openalex-snapshot
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inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btab096openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btu462openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot
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inferredcites →https://doi.org/10.1093/gbe/evz193openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msaa181openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msh112openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msu331openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
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inferredcites →https://doi.org/10.1093/molbev/msx319openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gkl200openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gks1116openalex-snapshot
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inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003747openalex-snapshot
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inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003973openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/49.2.202openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syaa079openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syab001openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syac024openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/sys028openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/sys036openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/sys049openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syw014openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syw105openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syx048openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syz021openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syz029openalex-snapshot
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inferredcites →https://doi.org/10.1093/sysbio/syz051openalex-snapshot
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inferredcites →https://doi.org/10.1098/rspb.2010.0392openalex-snapshot
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inferredcites →https://doi.org/10.1098/rspb.2014.0970openalex-snapshot
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inferredcites →https://doi.org/10.1098/rspb.2020.2102openalex-snapshot
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inferredcites →https://doi.org/10.1109/tcbb.2008.66openalex-snapshot
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inferredcites →https://doi.org/10.1111/1744-7917.13034openalex-snapshot
Testing the systematic status of Homalictus and Rostrohalictus with weakened cross‐vein groups within Halictini (Hymenoptera: Halictidae) using low‐coverage whole‐genome sequencing
inferredcites →https://doi.org/10.1111/1755-0998.13016openalex-snapshot
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inferredcites →https://doi.org/10.1111/1755-0998.13146openalex-snapshot
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inferredcites →https://doi.org/10.1111/2041-210x.12754openalex-snapshot
Identifying conserved genomic elements and designing universal bait sets to enrich them
inferredcites →https://doi.org/10.1111/2041-210x.13145openalex-snapshot
Phylogenomics from low‐coverage whole‐genome sequencing
inferredcites →https://doi.org/10.1111/cla.12439openalex-snapshot
Converging on the orb: denser taxon sampling elucidates spider phylogeny and new analytical methods support repeated evolution of the orb web
inferredcites →https://doi.org/10.1111/j.1096-0031.2005.00059.xopenalex-snapshot
A review of long‐branch attraction
inferredcites →https://doi.org/10.1111/j.1365-3113.2010.00563.xopenalex-snapshot
Data partitioning in Bayesian analysis: molecular phylogenetics of metalmark moths (Lepidoptera: Choreutidae)
inferredcites →https://doi.org/10.1111/j.1558-5646.1964.tb01674.xopenalex-snapshot
BUTTERFLIES AND PLANTS: A STUDY IN COEVOLUTION
inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00225.xopenalex-snapshot
A PHYLOGENETIC TEST FOR ADAPTIVE CONVERGENCE IN ROCK-DWELLING LIZARDS
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00549.xopenalex-snapshot
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inferredcites →https://doi.org/10.1111/jeb.12979openalex-snapshot
The impact of rate heterogeneity on inference of phylogenetic models of trait evolution
inferredcites →https://doi.org/10.1111/jse.12855openalex-snapshot
A comprehensive analysis of higher‐level phylogenetic relationships of Hemiptera based on transcriptome data
inferredcites →https://doi.org/10.1111/syen.12110openalex-snapshot
A molecular phylogeny and revised classification for the oldest ditrysian moth lineages ( L epidoptera: T ineoidea), with implications for ancestral feeding habits of the mega‐diverse D itrysia
inferredcites →https://doi.org/10.1111/syen.12129openalex-snapshot
A molecular phylogeny for the oldest (nonditrysian) lineages of extant L epidoptera, with implications for classification, comparative morphology and life‐history evolution
inferredcites →https://doi.org/10.1111/syen.12217openalex-snapshot
Phylotranscriptomics resolves ancient divergences in the Lepidoptera
inferredcites →https://doi.org/10.1111/syen.12275openalex-snapshot
Taxon sampling to address an ancient rapid radiation: a supermatrix phylogeny of early brachyceran flies (Diptera)
inferredcites →https://doi.org/10.1111/syen.12406openalex-snapshot
Phylogenomics — principles, opportunities and pitfalls of big‐data phylogenetics
inferredcites →https://doi.org/10.1111/syen.12431openalex-snapshot
How well do multispecies coalescent methods perform with mitochondrial genomic data? A case study of butterflies and moths (Insecta: Lepidoptera)
inferredcites →https://doi.org/10.1111/syen.12481openalex-snapshot
Adding leaves to the Lepidoptera tree: capturing hundreds of nuclear genes from old museum specimens
inferredcites →https://doi.org/10.1111/syen.12545openalex-snapshot
The unresolved phylogenomic tree of butterflies and moths (Lepidoptera): Assessing the potential causes and consequences
inferredcites →https://doi.org/10.1111/syen.12563openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.1177216openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.1257570openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.3277277openalex-snapshot
Molecular Phylogeny of the Animal Kingdom
inferredcites →https://doi.org/10.1146/annurev-ento-031616-035125openalex-snapshot
Phylogeny and Evolution of Lepidoptera
inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.102003.152633openalex-snapshot
Model Selection in Phylogenetics
inferredcites →https://doi.org/10.1163/187631291x00327openalex-snapshot
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inferredcites →https://doi.org/10.11646/zootaxa.3148.1.41openalex-snapshot
Order Lepidoptera Linnaeus, 1758. In: Zhang, Z.-Q. (Ed.) Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness
inferredcites →https://doi.org/10.1186/1471-2148-10-210openalex-snapshot
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
inferredcites →https://doi.org/10.1186/1471-2148-10-242openalex-snapshot
Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets
inferredcites →https://doi.org/10.1186/1471-2148-14-82openalex-snapshot
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inferredcites →https://doi.org/10.1186/1471-2148-6-4openalex-snapshot
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inferredcites →https://doi.org/10.1186/1741-7007-8-19openalex-snapshot
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inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12862-015-0520-0openalex-snapshot
Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera)
inferredcites →https://doi.org/10.1186/s12983-014-0081-xopenalex-snapshot
FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies
inferredcites →https://doi.org/10.1201/9781420060201-c1openalex-snapshot
Evolutionary Framework for Lepidoptera Model Systems
inferredcites →https://doi.org/10.1360/n052018-00222openalex-snapshot
Recent progress in phylogenomic methods
inferredcites →https://doi.org/10.1371/journal.pbio.1000602openalex-snapshot
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
inferredcites →https://doi.org/10.1371/journal.pone.0058568openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0082615openalex-snapshot
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inferredcites →https://doi.org/10.1534/g3.116.034744openalex-snapshot
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inferredcites →https://doi.org/10.2307/2404667openalex-snapshot
Monitoring Butterflies for Ecology and Conservation.
inferredcites →https://doi.org/10.3390/insects12100857openalex-snapshot
Low-Coverage Whole Genomes Reveal the Higher Phylogeny of Green Lacewings
inferredcites →https://doi.org/10.3724/sp.j.1002.2008.08016openalex-snapshot
Taxon sampling and the accuracy of phylogenetic analyses
inferredcites →https://doi.org/10.5860/choice.31-0297openalex-snapshot
The lepidoptera: form, function and diversity
inferredcites →https://doi.org/10.7208/chicago/9780226063195.001.0001openalex-snapshot
Butterflies

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/zookeys.1291.204651zenodo-depositor-declared
Investigating the phylogenetic placement of ectoparasitic families Cyclotornidae and Epipyropidae: Multigene insights into Zygaenoidea systematics (Lepidoptera)
inferred← citeshttps://doi.org/10.21203/rs.3.rs-9877814/v1openalex-snapshot
Characterization of the Mitochondrial Genome and Phylogenetic Analysis of Formica candida
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