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Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Leaf and canopy responses to elevated CO2 in a pine forest under free-air CO2 enrichment
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Ligninolytic activity of Phanerochaete chrysosporium: Physiology of suppression by NH 4 + and l-glutamate
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Small-scale distribution of extracellular enzymes, fungal, and bacterial biomass in Quercus petraea forest topsoil
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Defoliation increases carbon limitation in ectomycorrhizal symbiosis of Betula pubescens
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Ectomycorrhizal fungi and their enzymes in soils: is there enough evidence for their role as facultative soil saprotrophs?
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Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages
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Effects of Long-Term Nitrogen Addition on Microbial Enzyme Activity in Eight Forested and Grassland Sites: Implications for Litter and Soil Organic Matter Decomposition
inferredcites →https://doi.org/10.1007/s10533-004-0370-0openalex-snapshot
Nitrogen Cycles: Past, Present, and Future
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Extracellular Enzyme Activities and Soil Organic Matter Dynamics for Northern Hardwood Forests receiving Simulated Nitrogen Deposition
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Ecology of ligninolytic fungi associated with leaf litter decomposition
inferredcites →https://doi.org/10.1016/j.foreco.2004.03.018openalex-snapshot
Chronic nitrogen enrichment affects the structure and function of the soil microbial community in temperate hardwood and pine forests
inferredcites →https://doi.org/10.1016/j.jcss.2007.03.006openalex-snapshot
Efficient approximation of convex recolorings
inferredcites →https://doi.org/10.1016/j.soilbio.2010.03.026openalex-snapshot
Nitrogen alters carbon dynamics during early succession in boreal forest
inferredcites →https://doi.org/10.1016/j.soilbio.2012.06.008openalex-snapshot
Mineral fertilizer alters cellulolytic community structure and suppresses soil cellobiohydrolase activity in a long-term fertilization experiment
inferredcites →https://doi.org/10.1016/s0076-6879(05)97017-1openalex-snapshot
The Application of Rarefaction Techniques to Molecular Inventories of Microbial Diversity
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Linking plants to rocks: ectomycorrhizal fungi mobilize nutrients from minerals
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Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria
inferredcites →https://doi.org/10.1038/ismej.2012.116openalex-snapshot
Fungal community on decomposing leaf litter undergoes rapid successional changes
inferredcites →https://doi.org/10.1038/ismej.2013.34openalex-snapshot
Loss in microbial diversity affects nitrogen cycling in soil
inferredcites →https://doi.org/10.1038/nature05847openalex-snapshot
The human footprint in the carbon cycle of temperate and boreal forests
inferredcites →https://doi.org/10.1038/nature06592openalex-snapshot
An Earth-system perspective of the global nitrogen cycle
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Reduction of forest soil respiration in response to nitrogen deposition
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Identification of genes for lignin peroxidases and manganese peroxidases in ectomycorrhizal fungi
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A taxonomic distinctness index and its statistical properties
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Bacterial community assembly based on functional genes rather than species
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Assembling the Fungal Tree of Life: constructing the Structural and Biochemical Database
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Ecological Persistence of the Plant‐Mycorrhizal Mutualism: A Hypothesis from Species Coexistence Theory
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MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp636openalex-snapshot
PyNAST: a flexible tool for aligning sequences to a template alignment
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Search and clustering orders of magnitude faster than BLAST
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Correlated Asymmetry of Sequence and Functional Divergence Between Duplicate Proteins of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gkn879openalex-snapshot
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
inferredcites →https://doi.org/10.1099/00221287-148-11-3521openalex-snapshot
The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill b bThe GenBank accession numbers for the mcrA sequences reported in this paper are AF414034–AF414051 (see Fig. 2) and AF414007–AF414033 (environmental isolates in Fig. 3).
inferredcites →https://doi.org/10.1101/gr.1865504openalex-snapshot
GeneWise and Genomewise
inferredcites →https://doi.org/10.1111/ele.12109openalex-snapshot
Microbial community responses to anthropogenically induced environmental change: towards a systems approach
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Glacial history and colonization of Europe by the blue tit Parus caeruleus
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Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change
inferredcites →https://doi.org/10.1111/j.1365-2486.2008.01562.xopenalex-snapshot
Altered patterns of soil carbon substrate usage and heterotrophic respiration in a pine forest with elevated CO 2 and N fertilization
inferredcites →https://doi.org/10.1111/j.1365-2486.2010.02376.xopenalex-snapshot
Fungal community composition and function after long-term exposure of northern forests to elevated atmospheric CO2 and tropospheric O3
inferredcites →https://doi.org/10.1111/j.1365-2486.2011.02505.xopenalex-snapshot
Elevated CO 2 affects photosynthetic responses in canopy pine and subcanopy deciduous trees over 10 years: a synthesis from D uke FACE
inferredcites →https://doi.org/10.1111/j.1442-9993.2001.01070.pp.xopenalex-snapshot
A new method for non‐parametric multivariate analysis of variance
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The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
inferredcites →https://doi.org/10.1111/j.1461-0248.2008.01230.xopenalex-snapshot
Nitrogen additions and microbial biomass: a meta‐analysis of ecosystem studies
inferredcites →https://doi.org/10.1111/j.1462-2920.2008.01735.xopenalex-snapshot
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02548.xopenalex-snapshot
Responses of soil cellulolytic fungal communities to elevated atmospheric CO 2 are complex and variable across five ecosystems
inferredcites →https://doi.org/10.1111/j.1469-185x.1988.tb00725.xopenalex-snapshot
THE EFFECT OF ADDED NITROGEN ON THE RATE OF DECOMPOSITION OF ORGANIC MATTER
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03078.xopenalex-snapshot
Re‐assessment of plant carbon dynamics at the Duke free‐air CO 2 enrichment site: interactions of atmospheric [CO 2 ] with nitrogen and water availability over stand development
inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01343.xopenalex-snapshot
Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00106.xopenalex-snapshot
Degradation of cellulose by basidiomycetous fungi
inferredcites →https://doi.org/10.1111/j.1744-7429.2004.tb00321.xopenalex-snapshot
Extracellular Enzyme Activities and Carbon Chemistry as Drivers of Tropical Plant Litter Decomposition
inferredcites →https://doi.org/10.1111/nph.12481openalex-snapshot
Seasonal dynamics of fungal communities in a temperate oak forest soil
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.02810-10openalex-snapshot
Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis
inferredcites →https://doi.org/10.1128/aem.02893-07openalex-snapshot
Isolation of Fungal Cellobiohydrolase I Genes from Sporocarps and Forest Soils by PCR
inferredcites →https://doi.org/10.1128/aem.03156-12openalex-snapshot
Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition
inferredcites →https://doi.org/10.1128/aem.06826-11openalex-snapshot
Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes
inferredcites →https://doi.org/10.1128/aem.08018-11openalex-snapshot
Soil Fungal Cellobiohydrolase I Gene ( cbhI ) Composition and Expression in a Loblolly Pine Plantation under Conditions of Elevated Atmospheric CO 2 and Nitrogen Fertilization
inferredcites →https://doi.org/10.1128/aem.67.10.4399-4406.2001openalex-snapshot
Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
inferredcites →https://doi.org/10.1128/aem.71.9.5544-5550.2005openalex-snapshot
Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples
inferredcites →https://doi.org/10.1186/1748-7188-7-8openalex-snapshot
Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots
inferredcites →https://doi.org/10.1371/journal.pone.0020421openalex-snapshot
Simulated Atmospheric N Deposition Alters Fungal Community Composition and Suppresses Ligninolytic Gene Expression in a Northern Hardwood Forest
inferredcites →https://doi.org/10.1371/journal.pone.0039597openalex-snapshot
The Irreversible Loss of a Decomposition Pathway Marks the Single Origin of an Ectomycorrhizal Symbiosis
inferredcites →https://doi.org/10.1890/0012-9658(2000)081[2359:meseld]2.0.co;2openalex-snapshot
MICROBIAL ENZYME SHIFTS EXPLAIN LITTER DECAY RESPONSES TO SIMULATED NITROGEN DEPOSITION
inferredcites →https://doi.org/10.1890/0012-9658(2002)083[0104:befcco]2.0.co;2openalex-snapshot
BELOWGROUND ECTOMYCORRHIZAL FUNGAL COMMUNITY CHANGE OVER A NITROGEN DEPOSITION GRADIENT IN ALASKA
inferredcites →https://doi.org/10.1890/0012-9658(2006)87[2278:canaae]2.0.co;2openalex-snapshot
CO2-ENRICHMENT AND NUTRIENT AVAILABILITY ALTER ECTOMYCORRHIZAL FUNGAL COMMUNITIES
inferredcites →https://doi.org/10.1890/06-2057.1openalex-snapshot
NITROGEN LIMITATION OF NET PRIMARY PRODUCTIVITY IN TERRESTRIAL ECOSYSTEMS IS GLOBALLY DISTRIBUTED
inferredcites →https://doi.org/10.1890/1051-0761(1997)007[0737:haotgn]2.0.co;2openalex-snapshot
HUMAN ALTERATION OF THE GLOBAL NITROGEN CYCLE: SOURCES AND CONSEQUENCES
inferredcites →https://doi.org/10.1890/12-0292.1openalex-snapshot
Soil carbon sequestration in prairie grasslands increased by chronic nitrogen addition
inferredcites →https://doi.org/10.1890/es11-00117.1openalex-snapshot
Atmospheric CO2and soil extracellular enzyme activity: a meta-analysis and CO2gradient experiment
inferredcites →https://doi.org/10.3389/fmicb.2013.00001openalex-snapshot
Nucleic acid-based approaches to investigate microbial-related cheese quality defects
inferredcites →https://doi.org/10.3389/fmicb.2013.00078openalex-snapshot
Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon
inferredcites →https://doi.org/10.3852/09-316openalex-snapshot
Vertical distribution of fungal communities in tallgrass prairie soil

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)
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Taxonomy and phylogeny of Litschauerella (Hymenochaetales) and Tubulicium (Trechisporales) in East Asia: Three new species and six new records
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Kahvena rebeccae Tedersoo 2024, sp. nov.
inferred← citeshttps://doi.org/10.1002/ecs2.2687openalex-snapshot
Simple measurements in a complex system: soil community responses to nitrogen amendment in a Pinus taeda forest
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Positive Microbial‐Enzyme Feedbacks on Soil Organic Carbon Enhance Understory Cultivation of Paris polyphylla Across Forest Types
inferred← citeshttps://doi.org/10.1002/sae2.12072openalex-snapshot
Phosphorus addition predominantly influences the soil fungal community and functional guilds in a subtropical mountain forest
inferred← citeshttps://doi.org/10.1007/s00374-016-1142-4openalex-snapshot
Composition of the soil fungal community is more sensitive to phosphorus than nitrogen addition in the alpine meadow on the Qinghai-Tibetan Plateau
inferred← citeshttps://doi.org/10.1007/s10666-026-10162-1openalex-snapshot
Analytical Decision Framework for Modeling and Assessing Marine Meiofaunal Biodiversity Change
inferred← citeshttps://doi.org/10.1007/s11104-019-04291-8openalex-snapshot
Long-term nitrogen fertilization indirectly affects soil fungi community structure by changing soil and pruned litter in a subtropical tea (Camellia sinensis L.) plantation in China
inferred← citeshttps://doi.org/10.1007/s11104-021-05237-9openalex-snapshot
Sensitivity of soil fungal and bacterial community compositions to nitrogen and phosphorus additions in a temperate meadow
inferred← citeshttps://doi.org/10.1007/s11104-022-05380-xopenalex-snapshot
Plants with arbuscular mycorrhizal fungi efficiently acquire Nitrogen from substrate additions by shaping the decomposer community composition and their net plant carbon demand
inferred← citeshttps://doi.org/10.1007/s11104-024-06788-3openalex-snapshot
Effect of atmospheric N deposition on rhizosphere soil microbial community composition in a semi-arid grassland
inferred← citeshttps://doi.org/10.1007/s11368-020-02629-9openalex-snapshot
Nitrogen and water addition regulate soil fungal diversity and co-occurrence networks
inferred← citeshttps://doi.org/10.1007/s13225-020-00441-xopenalex-snapshot
Insights into the Tricholomatineae (Agaricales, Agaricomycetes): a new arrangement of Biannulariaceae and Callistosporium, Callistosporiaceae fam. nov., Xerophorus stat. nov., and Pleurocollybia incorporated into Callistosporium
inferred← citeshttps://doi.org/10.1016/b978-0-323-91140-5.00020-8openalex-snapshot
Responses of forest ecosystems to decreasing nitrogen deposition in eastern North America
inferred← citeshttps://doi.org/10.1016/j.catena.2024.108132openalex-snapshot
Divergent responses of soil microbial community to long-term nitrogen and phosphorus additions in a subtropical Chinese fir plantation
inferred← citeshttps://doi.org/10.1016/j.envpol.2018.09.135openalex-snapshot
Decreased atmospheric nitrogen deposition in eastern North America: Predicted responses of forest ecosystems
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Distinct roles of bacteria and fungi in mediating soil extracellular enzymes under long-term nitrogen deposition in temperate plantations
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Aquatic hyphomycetes in a changing environment
inferred← citeshttps://doi.org/10.1016/j.funeco.2016.05.011openalex-snapshot
Chronic nitrogen additions fundamentally restructure the soil fungal community in a temperate forest
inferred← citeshttps://doi.org/10.1016/j.jcz.2026.04.007openalex-snapshot
Enhancing knowledge of species diversity in the genus Paratylenchus (Nematoda: Tylenchulidae): three new pin nematode species and additional insights into a known species from Florida, USA
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Taxonomic, functional, and phylogenetic diversity of fungi along primary successional and elevational gradients near Mount Robson, British Columbia
inferred← citeshttps://doi.org/10.1016/j.rhisph.2025.101030openalex-snapshot
Nitrogen deficiency drives fungal compositional shifts without functional changes in wheat rhizosphere
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.142449openalex-snapshot
Different responses of soil bacterial and fungal communities to nitrogen deposition in a subtropical forest
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Linking soil fungal community structure and function to soil organic carbon chemical composition in intensively managed subtropical bamboo forests
inferred← citeshttps://doi.org/10.1016/j.soilbio.2017.10.039openalex-snapshot
Plant diversity is coupled with beta not alpha diversity of soil fungal communities following N enrichment in a semi-arid grassland
inferred← citeshttps://doi.org/10.1016/j.soilbio.2017.11.004openalex-snapshot
Nitrogen deposition combined with elevated precipitation is conducive to maintaining the stability of the soil fungal diversity on the Stipa baicalensis steppe
inferred← citeshttps://doi.org/10.1016/j.soilbio.2018.06.027openalex-snapshot
Simulated nitrogen deposition favors stress-tolerant fungi with low potential for decomposition
inferred← citeshttps://doi.org/10.1016/j.soilbio.2018.09.020openalex-snapshot
Consistent responses of surface- and subsurface soil fungal diversity to N enrichment are mediated differently by acidification and plant community in a semi-arid grassland
inferred← citeshttps://doi.org/10.1016/j.soilbio.2020.107919openalex-snapshot
Interactions of saprotrophic and root symbiotic fungi control the transformation of humic substances and phosphorus in Norway spruce needle litter
inferred← citeshttps://doi.org/10.1038/s44485-026-00003-0openalex-snapshot
Anthropogenic nitrogen deposition restructures decomposing microbial communities, altering SOM molecular composition, but not molecular complexity or diversity
inferred← citeshttps://doi.org/10.1071/sr18336openalex-snapshot
Variations in soil fungal communities after continuous fertiliser treatment under the ridge and furrow rainfall harvesting system in a semiarid region of China
inferred← citeshttps://doi.org/10.1101/2020.05.08.085407openalex-snapshot
Nutrient Source and Mycorrhizal Association jointly alters Soil Microbial Communities that shape Plant-Rhizosphere-Soil Carbon-Nutrient Flows
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Different response of bacteria, archaea and fungi to process parameters in nine full‐scale anaerobic digesters
inferred← citeshttps://doi.org/10.1111/gcb.14770openalex-snapshot
Anthropogenic N deposition alters soil organic matter biochemistry and microbial communities on decaying fine roots
inferred← citeshttps://doi.org/10.1111/nph.17372openalex-snapshot
PacBio sequencing of Glomeromycota rDNA: a novel amplicon covering all widely used ribosomal barcoding regions and its applicability in taxonomy and ecology of arbuscular mycorrhizal fungi
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inferred← citeshttps://doi.org/10.1128/aem.00598-18openalex-snapshot
Short-Term Transcriptional Response of Microbial Communities to Nitrogen Fertilization in a Pine Forest Soil
inferred← citeshttps://doi.org/10.1128/aem.02251-18openalex-snapshot
Historical Nitrogen Deposition and Straw Addition Facilitate the Resistance of Soil Multifunctionality to Drying-Wetting Cycles
inferred← citeshttps://doi.org/10.1134/s2079086422030069openalex-snapshot
Ribosomal RNA of Metchnikovellids in Gregarine Transcriptomes and rDNA of Microsporidia Sensu Lato in Metagenomes
inferred← citeshttps://doi.org/10.1163/15685411-bja10325openalex-snapshot
Cotylenchus cleo gen. n., sp. n., a new plant-parasitic nematode (Tylenchida: Anguinidae) parasitising on leaves of western sword fern plants from rainforests in Washington State, USA
inferred← citeshttps://doi.org/10.1186/s40168-017-0259-5openalex-snapshot
Novel soil-inhabiting clades fill gaps in the fungal tree of life
inferred← citeshttps://doi.org/10.21203/rs.3.rs-515991/v1openalex-snapshot
Soil Fungal Community Composition Is More Sensitive To Nitrogen And Phosphorus Additions Than The Bacterial Community In A Temperate Meadow Ecosystem
inferred← citeshttps://doi.org/10.2139/ssrn.5056238openalex-snapshot
Nitrogen Deficiency Drives Fungal Compositional Shifts Without Functional Changes in Wheat Rhizosphere
inferred← citeshttps://doi.org/10.2478/jofnem-2024-0021openalex-snapshot
Morphological and Molecular Analysis of Two Mycophagous Nematodes, Aphelenchoides bicaudatus and A. rutgersi (Nematoda: Aphelenchoididae) from Florida Strawberry
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Canopy and Understory Nitrogen Addition Alters Organic Soil Bacterial Communities but Not Fungal Communities in a Temperate Forest
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1231442openalex-snapshot
Effects of warming and nitrogen addition on soil fungal and bacterial community structures in a temperate meadow
inferred← citeshttps://doi.org/10.3390/agriculture11121280openalex-snapshot
Spatial Distribution and Influencing Factors of Soil Fungi in a Degraded Alpine Meadow Invaded by Stellera chamaejasme
inferred← citeshttps://doi.org/10.3390/jof9010053openalex-snapshot
Does Forest Soil Fungal Community Respond to Short-Term Simulated Nitrogen Deposition in Different Forests in Eastern China?
inferred← citeshttps://doi.org/10.3390/microorganisms10091776openalex-snapshot
Exploring LSU and ITS rDNA Sequences for Acanthamoeba Identification and Phylogeny
inferred← citeshttps://doi.org/10.7287/peerj.7631v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Differential mechanisms underlying responses of soil bacterial and fungal communities to nitrogen and phosphorus inputs in a subtropical forest (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.7631v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Differential mechanisms underlying responses of soil bacterial and fungal communities to nitrogen and phosphorus inputs in a subtropical forest (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.7631openalex-snapshot
Differential mechanisms underlying responses of soil bacterial and fungal communities to nitrogen and phosphorus inputs in a subtropical forest
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.