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Genomic evidence for role of inversion 3 RP of Drosophila melanogaster in facilitating climate change adaptation

https://doi.org/10.1111/mec.13161
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Evolutionary genomics of inversions in Drosophila pseudoobscura : Evidence for epistasis
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The Sequence Alignment/Map format and SAMtools
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The variant call format and VCFtools
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Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies
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Contrasting Histories of Three Gene Regions Associated With In(3L)Payne of Drosophila melanogaster
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Recombination and Gene Flux Caused by Gene Conversion and Crossing Over in Inversion Heterokaryotypes
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Unusual Haplotype Structure at the Proximal Breakpoint of In(2L)t in a Natural Population of Drosophila melanogaster
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SELECTION ON RECOMBINATION IN CLINES
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The latitudinal cline in the In(3R)Payne inversion polymorphism has shifted in the last 20 years in Australian Drosophila melanogaster populations
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Genome‐wide patterns of latitudinal differentiation among populations of D rosophila melanogaster from N orth A merica
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Recombination and selection in the maintenance of the adaptive value of inversions
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CLINAL PATTERNS OF CHROMOSOMAL INVERSION POLYMORPHISMS INDROSOPHILA SUBOBSCURAARE PARTLY ASSOCIATED WITH THERMAL PREFERENCES AND HEAT STRESS RESISTANCE
inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01836.xopenalex-snapshot
REPRODUCTIVE ISOLATION AND LOCAL ADAPTATION QUANTIFIED FOR A CHROMOSOME INVERSION IN A MALARIA MOSQUITO
inferredcites →https://doi.org/10.1111/mec.12276openalex-snapshot
RAD seq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
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Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping
inferredcites →https://doi.org/10.1111/mec.13455openalex-snapshot
Secondary contact and local adaptation contribute to genome‐wide patterns of clinal variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1126/science.1080600openalex-snapshot
Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes
inferredcites →https://doi.org/10.1126/science.1109523openalex-snapshot
A Rapid Shift in a Classic Clinal Pattern in Drosophila Reflecting Climate Change
inferredcites →https://doi.org/10.1126/science.287.5461.2185openalex-snapshot
The Genome Sequence of Drosophila melanogaster
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Genetics of the Evolutionary Process
inferredcites →https://doi.org/10.1146/annurev.ecolsys.39.110707.173532openalex-snapshot
Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?
inferredcites →https://doi.org/10.1186/1471-2148-13-100openalex-snapshot
Patterns of genetic variation across inversions: geographic variation in the In(2L)t inversion in populations of Drosophila melanogaster from eastern Australia
inferredcites →https://doi.org/10.1371/journal.pbio.1000313openalex-snapshot
Genome Sequence of the Pea Aphid Acyrthosiphon pisum
inferredcites →https://doi.org/10.1371/journal.pbio.1000500openalex-snapshot
A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation
inferredcites →https://doi.org/10.1371/journal.pgen.0030217openalex-snapshot
Localization of Candidate Regions Maintaining a Common Polymorphic Inversion (2La) in Anopheles gambiae
inferredcites →https://doi.org/10.1371/journal.pgen.1003056openalex-snapshot
Population Genomics of Inversion Polymorphisms in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
inferredcites →https://doi.org/10.1534/genetics.104.038810openalex-snapshot
The Structure and Population Genetics of the Breakpoints Associated With the Cosmopolitan Chromosomal Inversion In(3R)Payne in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.105.041947openalex-snapshot
Mechanisms of Genetic Exchange Within the Chromosomal Inversions of Drosophila pseudoobscura
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.105.053173openalex-snapshot
Patterns of Diversity and Linkage Disequilibrium Within the Cosmopolitan Inversion In(3R)Payne in Drosophila melanogaster Are Indicative of Coadaptation
inferredcites →https://doi.org/10.1534/genetics.106.057562openalex-snapshot
A Nonself Recognition Gene Complex inNeurospora crassa
inferredcites →https://doi.org/10.1534/genetics.110.123059openalex-snapshot
Genomic Differentiation Between Temperate and Tropical Australian Populations ofDrosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.111.137794openalex-snapshot
Ecological Genomics of Anopheles gambiae Along a Latitudinal Cline: A Population-Resequencing Approach
inferredcites →https://doi.org/10.1534/genetics.114.161463openalex-snapshot
Parallel Geographic Variation in Drosophila melanogaster
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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Bioclimatic transect networks: Powerful observatories of ecological change
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Long‐Term Maintenance of Complex Chromosomal Inversion Polymorphism in Drosophila mediopunctata
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An endangered flightless grasshopper with strong genetic structure maintains population genetic variation despite extensive habitat loss
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Systems genetic analysis of inversion polymorphisms in the malaria mosquito Anopheles gambiae
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Ancestral and local adaptation contribute to dispersal out of the Qinghai–Tibet Plateau in a bumblebee
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Estimation of population genetic parameters using an EM algorithm and sequence data from experimental evolution populations
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Fine-Scale Position Effects Shape the Distribution of Inversion Breakpoints in Drosophila melanogaster
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“Islands of Divergence” in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements
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Female meiotic drive shapes the distribution of rare inversion polymorphisms in Drosophila melanogaster
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An Ancestral Balanced Inversion Polymorphism Confers Global Adaptation
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An inversion supergene in Drosophila underpins latitudinal clines in survival traits
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Cosmopolitan inversions have a major impact on trait variation and the power of different GWAS approaches to identify associations
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Enhancing Ebony? Common Associations With a cis-Regulatory Haplotype for Drosophila melanogaster Thoracic Pigmentation in a Japanese Population and Australian Populations
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