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Symbiodinium population genetics: testing for species boundaries and analysing samples with mixed genotypes

https://doi.org/10.1111/mec.13623
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00227-002-0829-2openalex-snapshot
Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs
inferredcites →https://doi.org/10.1007/s00248-010-9681-yopenalex-snapshot
The Relative Significance of Host–Habitat, Depth, and Geography on the Ecology, Endemism, and Speciation of Coral Endosymbionts in the Genus Symbiodinium
inferredcites →https://doi.org/10.1007/s00338-004-0428-4openalex-snapshot
High diversity and host specificity observed among symbiotic dinoflagellates in reef coral communities from Hawaii
inferredcites →https://doi.org/10.1007/s00338-005-0487-1openalex-snapshot
Geographic distribution of zooxanthella types in three coral species on the Great Barrier Reef sampled after the 2002 bleaching event
inferredcites →https://doi.org/10.1007/s00338-008-0406-3openalex-snapshot
Distribution and photobiology of Symbiodinium types in different light environments for three colour morphs of the coral Madracis pharensis: is there more to it than total irradiance?
inferredcites →https://doi.org/10.1007/s00338-008-0450-zopenalex-snapshot
High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium
inferredcites →https://doi.org/10.1007/s12686-009-9048-1openalex-snapshot
Isolation, characterisation and cross amplification of thirteen microsatellite loci for coral endo-symbiotic dinoflagellates (Symbiodinium clade C)
inferredcites →https://doi.org/10.1007/s12686-013-0023-5openalex-snapshot
Microsatellite loci for Symbiodinium goreaui and other Clade C Symbiodinium
inferredcites →https://doi.org/10.1016/0040-5809(72)90035-4openalex-snapshot
The sampling theory of selectively neutral alleles
inferredcites →https://doi.org/10.1016/0169-5347(95)90031-4openalex-snapshot
A species definition for the modern synthesis
inferredcites →https://doi.org/10.1038/151347a0openalex-snapshot
Systematics and the origin of Species : from the Viewpoint of a Zoologist
inferredcites →https://doi.org/10.1038/srep08562openalex-snapshot
Symbiodinium thermophilum sp. nov., a thermotolerant symbiotic alga prevalent in corals of the world's hottest sea, the Persian/Arabian Gulf
inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01988.xopenalex-snapshot
Geographic and habitat partitioning of genetically distinct zooxanthellae (Symbiodinium) in Acropora corals on the Great Barrier Reef
inferredcites →https://doi.org/10.1046/j.1365-294x.2003.02058.xopenalex-snapshot
Fine‐scale diversity and specificity in the most prevalent lineage of symbiotic dinoflagellates (Symbiodinium, Dinophyceae) of the Caribbean
inferredcites →https://doi.org/10.1046/j.1471-8286.2002.00208.xopenalex-snapshot
metasim 1.0: an individual‐based environment for simulating population genetics of complex population dynamics
inferredcites →https://doi.org/10.1046/j.1529-8817.2001.01031.xopenalex-snapshot
INVESTIGATING THE BIODIVERSITY, ECOLOGY, AND PHYLOGENY OF ENDOSYMBIOTIC DINOFLAGELLATES IN THE GENUS SYMBIODINIUM USING THE ITS REGION: IN SEARCH OF A “SPECIES” LEVEL MARKER
inferredcites →https://doi.org/10.1073/pnas.0406166101openalex-snapshot
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
inferredcites →https://doi.org/10.1073/pnas.0502030102openalex-snapshot
Ernst Mayr and the modern concept of species
inferredcites →https://doi.org/10.1073/pnas.1208931110openalex-snapshot
Long prereproductive selection and divergence by depth in a Caribbean candelabrum coral
inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot
Inference of Population Structure Using Multilocus Genotype Data
inferredcites →https://doi.org/10.1093/genetics/164.2.781openalex-snapshot
Likelihood-Based Estimation of Microsatellite Mutation Rates
inferredcites →https://doi.org/10.1093/genetics/49.4.725openalex-snapshot
THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION
inferredcites →https://doi.org/10.1093/sysbio/syp072openalex-snapshot
Relaxed Molecular Clocks, the Bias–Variance Trade-off, and the Quality of Phylogenetic Inference
inferredcites →https://doi.org/10.1093/sysbio/syp089openalex-snapshot
Species Delimitation: A Case Study in a Problematic Ant Taxon
inferredcites →https://doi.org/10.1098/rsbl.2003.0025openalex-snapshot
Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species
inferredcites →https://doi.org/10.1098/rspb.2001.1733openalex-snapshot
Patterns of coral–dinoflagellate associations in Acropora : significance of local availability and physiology of Symbiodinium strains and host–symbiont selectivity
inferredcites →https://doi.org/10.1098/rspb.2006.3567openalex-snapshot
The role of zooxanthellae in the thermal tolerance of corals: a ‘nugget of hope’ for coral reefs in an era of climate change
inferredcites →https://doi.org/10.1098/rspb.2008.0180openalex-snapshot
Species–specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress
inferredcites →https://doi.org/10.1098/rstb.2005.1722openalex-snapshot
The unholy trinity: taxonomy, species delimitation and DNA barcoding
inferredcites →https://doi.org/10.1111/evo.12270openalex-snapshot
HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb01143.xopenalex-snapshot
DESATURASE‐2 , ENVIRONMENTAL ADAPTATION, AND SEXUAL ISOLATION IN DROSOPHILA MELANOGASTER
inferredcites →https://doi.org/10.1111/j.1365-2699.2010.02273.xopenalex-snapshot
Long‐standing environmental conditions, geographic isolation and host–symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genus Symbiodinium
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02209.xopenalex-snapshot
A simple method for the calculation of microsatellite genotype distances irrespective of ploidy level
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02396.xopenalex-snapshot
FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis)
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03403.xopenalex-snapshot
Niche partitioning of closely related symbiotic dinoflagellates
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.04037.xopenalex-snapshot
Cohesive molecular genetic data delineate species diversity in the dinoflagellate genus Symbiodinium
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04939.xopenalex-snapshot
Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05115.xopenalex-snapshot
Range‐wide population genetic structure of Symbiodinium associated with the Caribbean Sea fan coral, Gorgonia ventalina
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05357.xopenalex-snapshot
Genotypic diversity and spatial–temporal distribution of Symbiodinium clones in an abundant reef coral
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05528.xopenalex-snapshot
Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes
inferredcites →https://doi.org/10.1111/j.1529-8817.1987.tb02534.xopenalex-snapshot
SYMBIODINIUM MICROADRIATICUM FREUDENTHAL, S. GOREAUII SP. NOV., S. KAWAGUTII SP. NOV. AND S. PILOSUM SP. NOV.: GYMNODINIOID DINOFLAGELLATE SYMBIONTS OF MARINE INVERTEBRATES 1
inferredcites →https://doi.org/10.1111/j.1529-8817.2008.00621.xopenalex-snapshot
SYMBIODINIUM NATANS SP. NOV.: A “FREE‐LIVING” DINOFLAGELLATE FROM TENERIFE (NORTHEAST‐ATLANTIC OCEAN) 1
inferredcites →https://doi.org/10.1111/j.1529-8817.2012.01217.xopenalex-snapshot
A genetics‐based description of Symbiodinium minutum sp. nov. and S. psygmophilum sp. nov. (Dinophyceae), two dinoflagellates symbiotic with cnidaria
inferredcites →https://doi.org/10.1111/jbi.12110openalex-snapshot
Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo‐Pacific cauliflower corals ( Pocillopora , Scleractinia)
inferredcites →https://doi.org/10.1111/mec.12342openalex-snapshot
Spatial and temporal genetic structure of S ymbiodinium populations within a common reef‐building coral on the G reat B arrier R eef
inferredcites →https://doi.org/10.1111/mec.12405openalex-snapshot
Vectored dispersal of S ymbiodinium by larvae of a C aribbean gorgonian octocoral
inferredcites →https://doi.org/10.1111/mec.12788openalex-snapshot
New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studies
inferredcites →https://doi.org/10.1111/mec.12808openalex-snapshot
Cryptic diversity hides host and habitat specialization in a gorgonian‐algal symbiosis
inferredcites →https://doi.org/10.1111/mec.13048openalex-snapshot
Species are hypotheses: avoid connectivity assessments based on pillars of sand
inferredcites →https://doi.org/10.1186/1471-2148-9-70openalex-snapshot
Rapid speciation in a newly opened postglacial marine environment, the Baltic Sea
inferredcites →https://doi.org/10.1371/journal.pone.0029013openalex-snapshot
Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping
inferredcites →https://doi.org/10.1371/journal.pone.0029535openalex-snapshot
A Connection between Colony Biomass and Death in Caribbean Reef-Building Corals
inferredcites →https://doi.org/10.1371/journal.pone.0079208openalex-snapshot
Long-Range Dispersal and High-Latitude Environments Influence the Population Structure of a “Stress-Tolerant” Dinoflagellate Endosymbiont
inferredcites →https://doi.org/10.2216/13-186.1openalex-snapshot
Ecologically differentiated stress-tolerant endosymbionts in the dinoflagellate genus Symbiodinium (Dinophyceae) Clade D are different species
inferredcites →https://doi.org/10.2307/1438628openalex-snapshot
Systematics and the Origin of Species from the Viewpoint of a Zoologist
inferredcites →https://doi.org/10.2307/1542809openalex-snapshot
Cellular growth of host and symbiont in a cnidarian-zooxanthellar symbiosis
inferredcites →https://doi.org/10.3354/meps275097openalex-snapshot
Distinct ITS types of Symbiodinium in Clade C correlate with cnidarian/dinoflagellate specificity during onset of symbiosis
inferredcites →https://doi.org/10.4319/lo.2003.48.5.2046openalex-snapshot
Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.5435.1.1zenodo-depositor-declared
A taxonomic revision of the Palaearctic species of the ant genus Tapinoma Mayr 1861 (Hymenoptera: Formicidae)
inferred← citeshttps://doi.org/10.1007/978-3-319-75393-5_6openalex-snapshot
Bleaching Resistance and the Role of Algal Endosymbionts
inferred← citeshttps://doi.org/10.1007/s00338-018-1679-9openalex-snapshot
Accurate population genetic measurements require cryptic species identification in corals
inferred← citeshttps://doi.org/10.1007/s00338-018-1693-yopenalex-snapshot
Intra-genomic variation in Symbiodinium correlates negatively with photosynthetic efficiency and coral host performance
inferred← citeshttps://doi.org/10.1007/s00338-024-02503-xopenalex-snapshot
The diversity, distribution, and temporal stability of coral ‘zooxanthellae’ on a pacific reef: from the scale of individual colonies to across the host community
inferred← citeshttps://doi.org/10.1007/s00338-025-02767-xopenalex-snapshot
Symbiodiniaceae shifts over the last decade on the hottest coral reefs on Earth
inferred← citeshttps://doi.org/10.1016/j.tree.2019.04.010openalex-snapshot
Genome Evolution of Coral Reef Symbionts as Intracellular Residents
inferred← citeshttps://doi.org/10.1038/s41396-021-01007-8openalex-snapshot
Mutualistic microalgae co-diversify with reef corals that acquire symbionts during egg development
inferred← citeshttps://doi.org/10.1038/s41437-022-00531-3openalex-snapshot
Population genomics for symbiotic anthozoans: can reduced representation approaches be used for taxa without reference genomes?
inferred← citeshttps://doi.org/10.1080/21501203.2017.1352049openalex-snapshot
The roles of endolithic fungi in bioerosion and disease in marine ecosystems. I. General concepts
inferred← citeshttps://doi.org/10.1111/gcb.13718openalex-snapshot
Symbiodinium mitigate the combined effects of hypoxia and acidification on a noncalcifying cnidarian
inferred← citeshttps://doi.org/10.1111/jeu.12692openalex-snapshot
New Species of Closely Related Endosymbiotic Dinoflagellates in the Greater Caribbean have Niches Corresponding to Host Coral Phylogeny
inferred← citeshttps://doi.org/10.1111/jpy.12523openalex-snapshot
Symbiodinium(Dinophyceae) community patterns in invertebrate hosts from inshore marginal reefs of the southern Great Barrier Reef, Australia
inferred← citeshttps://doi.org/10.1111/jpy.13340openalex-snapshot
Formal recognition of host‐generalist species of dinoflagellate (Cladocopium, Symbiodiniaceae) mutualistic with Indo‐Pacific reef corals
inferred← citeshttps://doi.org/10.1111/jpy.70127openalex-snapshot
Resolving widespread and endemic dinoflagellates (Symbiodiniaceae) mutualistic with Indo‐Pacific octocorals reveals differences in specificity based on host phylogeny
inferred← citeshttps://doi.org/10.1111/mec.13631openalex-snapshot
Microsatellite allele sizes alone are insufficient to delineate species boundaries in Symbiodinium
inferred← citeshttps://doi.org/10.1111/mec.13676openalex-snapshot
On the difficulty of recognizing distinct Symbiodinium species in mixed communities of algal symbionts
inferred← citeshttps://doi.org/10.1111/mec.14055openalex-snapshot
Population genetics of reef coral endosymbionts (Symbiodinium, Dinophyceae)
inferred← citeshttps://doi.org/10.1111/mec.15631openalex-snapshot
Cryptic lineages respond differently to coral bleaching
inferred← citeshttps://doi.org/10.1111/mec.15668openalex-snapshot
Cladocopium community divergence in two Acropora coral hosts across multiple spatial scales
inferred← citeshttps://doi.org/10.1111/nph.14760openalex-snapshot
Biotic interactions as drivers of algal origin and evolution
inferred← citeshttps://doi.org/10.1186/s12864-018-4857-9openalex-snapshot
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes
inferred← citeshttps://doi.org/10.1186/s12864-024-10822-0openalex-snapshot
The genome of a giant clam zooxanthella (Cladocopium infistulum) offers few clues to adaptation as an extracellular symbiont with high thermotolerance
inferred← citeshttps://doi.org/10.2216/16-86.1openalex-snapshot
Symbiodinium glynnii sp. nov ., a species of stress-tolerant symbiotic dinoflagellates from pocilloporid and montiporid corals in the Pacific Ocean
inferred← citeshttps://doi.org/10.26008/1912/bco-dmo.957700.1openalex-snapshot
Genetic analyses and microsatellite characterization for formal recognition of new species of host-generalist species of dinoflagellate (Cladocopium, Symbiodiniaceae) mutualistic with Indo-Pacific reef corals collected from 2003 through 2015
inferred← citeshttps://doi.org/10.26008/1912/bco-dmo.957899.1openalex-snapshot
Diversity, distribution, and temporal stability of coral 'zooxanthellae' on a Pacific reef evaluated with samples collected in Palau from 2013 to 2022
inferred← citeshttps://doi.org/10.26686/wgtn.17060309openalex-snapshot
The Nutritional Implications of Partner Switching in the Cnidarian-Dinoflagellate Symbiosis
inferred← citeshttps://doi.org/10.26686/wgtn.17060309.v1openalex-snapshot
The Nutritional Implications of Partner Switching in the Cnidarian-Dinoflagellate Symbiosis
inferred← citeshttps://doi.org/10.26686/wgtn.17068196openalex-snapshot
Symbiodinium diversity and potential hybridisation on the highly biodiverse coral reefs of Timor-Leste
inferred← citeshttps://doi.org/10.26686/wgtn.17068196.v1openalex-snapshot
Symbiodinium diversity and potential hybridisation on the highly biodiverse coral reefs of Timor-Leste
inferred← citeshttps://doi.org/10.26686/wgtn.24986544openalex-snapshot
Developments in the Cryopreservation of Marine Dinoflagellates
inferred← citeshttps://doi.org/10.7287/peerj.15023v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Building consensus around the assessment and interpretation of Symbiodiniaceae diversity (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.15023v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Building consensus around the assessment and interpretation of Symbiodiniaceae diversity (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.3472v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.3472v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.3472v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.15023openalex-snapshot
Building consensus around the assessment and interpretation of Symbiodiniaceae diversity
inferred← citeshttps://doi.org/10.7717/peerj.3472openalex-snapshot
Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands
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