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Inferring the geographic origin of a range expansion: Latitudinal and longitudinal coordinates inferred from genomic data in an ABC framework with the program x ‐ origin

https://doi.org/10.1111/mec.14380
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Evolution of Coalescence Times, Genetic Diversity and Structure during Colonization
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Modern Applied Statistics with S
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Inferring divergence times within pikas (Ochotona spp.) using mtDNA and relaxed molecular dating techniques
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The genetic legacy of the Quaternary ice ages
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Visualizing spatial population structure with estimated effective migration surfaces
inferredcites →https://doi.org/10.1073/pnas.0507611102openalex-snapshot
Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa
inferredcites →https://doi.org/10.1073/pnas.0706568104openalex-snapshot
Circuit theory predicts gene flow in plant and animal populations
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Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa
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SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination
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Analysis of DNA diversity by spatial autocorrelation.
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Approximate Bayesian Computation in Population Genetics
inferredcites →https://doi.org/10.1093/molbev/msg009openalex-snapshot
Intra-Deme Molecular Diversity in Spatially Expanding Populations
inferredcites →https://doi.org/10.1093/molbev/msq010openalex-snapshot
Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture
inferredcites →https://doi.org/10.1093/molbev/msq028openalex-snapshot
Bayesian Inference of the Demographic History of Chimpanzees
inferredcites →https://doi.org/10.1101/gr.3708505openalex-snapshot
Recovering the geographic origin of early modern humans by realistic and spatially explicit simulations
inferredcites →https://doi.org/10.1111/2041-210x.12200openalex-snapshot
SDM toolbox: a python‐based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses
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Spatially explicit summary statistics for historical population genetic inference
inferredcites →https://doi.org/10.1111/ecog.02893openalex-snapshot
Distributional shifts – not geographic isolation – as a probable driver of montane species divergence
inferredcites →https://doi.org/10.1111/evo.12159openalex-snapshot
INTEGRATIVE TESTING OF HOW ENVIRONMENTS FROM THE PAST TO THE PRESENT SHAPE GENETIC STRUCTURE ACROSS LANDSCAPES
inferredcites →https://doi.org/10.1111/evo.12202openalex-snapshot
DETECTING RANGE EXPANSIONS FROM GENETIC DATA
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb00500.xopenalex-snapshot
ISOLATION BY RESISTANCE
inferredcites →https://doi.org/10.1111/j.1365-2699.2012.02782.xopenalex-snapshot
Late Pleistocene species distribution modelling of North Atlantic intertidal invertebrates
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04702.xopenalex-snapshot
Exploring the population genetic consequences of the colonization process with spatio‐temporally explicit models: insights from coupled ecological, demographic and genetic models in montane grasshoppers
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05640.xopenalex-snapshot
Spatially explicit models of dynamic histories: examination of the genetic consequences of Pleistocene glaciation and recent climate change on the American Pika
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01287.xopenalex-snapshot
DIVERSITY AND DEMOGRAPHY IN BERINGIA: MULTILOCUS TESTS OF PALEODISTRIBUTION MODELS REVEAL THE COMPLEX HISTORY OF ARCTIC GROUND SQUIRRELS
inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02847.xopenalex-snapshot
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
inferredcites →https://doi.org/10.1111/jbi.12035openalex-snapshot
Deep barriers, shallow divergences: reduced phylogeographical structure in the collared pika ( M ammalia: L agomorpha: O chotona collaris )
inferredcites →https://doi.org/10.1111/jbi.12127openalex-snapshot
Marine dispersal and barriers drive Atlantic seahorse diversification
inferredcites →https://doi.org/10.1111/jbi.12728openalex-snapshot
Quantifying the similarity between genes and geography across Alaska's alpine small mammals
inferredcites →https://doi.org/10.1111/mec.12939openalex-snapshot
Adaptive divergence between lake and stream populations of an E ast A frican cichlid fish
inferredcites →https://doi.org/10.1111/mec.13270openalex-snapshot
Colonization from divergent ancestors: glaciation signatures on contemporary patterns of genomic variation in Collared Pikas (Ochotona collaris)
inferredcites →https://doi.org/10.1111/mec.13735openalex-snapshot
Contrasting support for alternative models of genomic variation based on microhabitat preference: species‐specific effects of climate change in alpine sedges
inferredcites →https://doi.org/10.1111/mec.13804openalex-snapshot
Tests of species‐specific models reveal the importance of drought in postglacial range shifts of a Mediterranean‐climate tree: insights from integrative distributional, demographic and coalescent modelling and ABC model selection
inferredcites →https://doi.org/10.1126/science.1166955openalex-snapshot
Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot
inferredcites →https://doi.org/10.1146/annurev.ecolsys.38.091206.095702openalex-snapshot
Statistical Phylogeography
inferredcites →https://doi.org/10.1186/1471-2105-11-116openalex-snapshot
ABCtoolbox: a versatile toolkit for approximate Bayesian computations
inferredcites →https://doi.org/10.1198/106186006x136976openalex-snapshot
Validation of Software for Bayesian Models Using Posterior Quantiles
inferredcites →https://doi.org/10.1371/journal.pbio.0030193openalex-snapshot
On the Number of New World Founders: A Population Genetic Portrait of the Peopling of the Americas
inferredcites →https://doi.org/10.1371/journal.pcbi.1000491openalex-snapshot
The Origins of Lactase Persistence in Europe
inferredcites →https://doi.org/10.1371/journal.pgen.1002886openalex-snapshot
A Quantitative Comparison of the Similarity between Genes and Geography in Worldwide Human Populations
inferredcites →https://doi.org/10.1371/journal.pgen.1005703openalex-snapshot
A Spatial Framework for Understanding Population Structure and Admixture
inferredcites →https://doi.org/10.1371/journal.pntd.0005002openalex-snapshot
Spatial Heterogeneity of Habitat Suitability for Rift Valley Fever Occurrence in Tanzania: An Ecological Niche Modelling Approach
inferredcites →https://doi.org/10.1371/journal.pone.0000563openalex-snapshot
Locating Pleistocene Refugia: Comparing Phylogeographic and Ecological Niche Model Predictions
inferredcites →https://doi.org/10.1534/genetics.106.062851openalex-snapshot
Molecular Diversity After a Range Expansion in Heterogeneous Environments
inferredcites →https://doi.org/10.1534/genetics.109.102509openalex-snapshot
Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood
inferredcites →https://doi.org/10.1534/genetics.110.114819openalex-snapshot
Using Environmental Correlations to Identify Loci Underlying Local Adaptation
inferredcites →https://doi.org/10.1644/08-mamm-a-253.1openalex-snapshot
Revised Distribution of the Alaska Marmot, Marmota Broweri, and Confirmation of Parapatry with Hoary Marmots

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.21425/fob.18.139537zenodo-depositor-declared
Towards a comprehensive view on evolutionary refugia in West African rainforests
inferred← citeshttps://doi.org/10.1007/978-3-319-93997-1_1openalex-snapshot
Molecular Biodiversity Convergence with Biogeography and Ethnobotany of Rare and Endangered Medicinal Plants from Northern Vietnam
inferred← citeshttps://doi.org/10.1007/978-3-319-93997-1_25openalex-snapshot
Correction to: Molecular Biodiversity Convergence with Biogeography and Ethnobotany of Rare and Endangered Medicinal Plants from Northern Vietnam
inferred← citeshttps://doi.org/10.1038/s41437-018-0164-0openalex-snapshot
Demographic inferences after a range expansion can be biased: the test case of the blacktip reef shark (Carcharhinus melanopterus)
inferred← citeshttps://doi.org/10.1073/pnas.1901656116openalex-snapshot
Genomic evidence of survival near ice sheet margins for some, but not all, North American trees
inferred← citeshttps://doi.org/10.1093/aobpla/plaa005openalex-snapshot
Small spaces, big impacts: contributions of micro-environmental variation to population persistence under climate change
inferred← citeshttps://doi.org/10.1093/aobpla/plz017openalex-snapshot
Recent range expansion in Australian hummock grasses (Triodia) inferred using genotyping-by-sequencing
inferred← citeshttps://doi.org/10.1093/jmammal/gyab158openalex-snapshot
Postglacial colonization in the Great Lakes Region by the white-footed mouse (Peromyscus leucopus): conflicts between genomic and field data
inferred← citeshttps://doi.org/10.1093/jmammal/gyy148openalex-snapshot
The emerging role of mammal collections in 21st century mammalogy
inferred← citeshttps://doi.org/10.1093/jmammal/gyy184openalex-snapshot
Emerging genomic applications in mammalian ecology, evolution, and conservation
inferred← citeshttps://doi.org/10.1093/molbev/msae091openalex-snapshot
Boundary Effects Cause False Signals of Range Expansions in Population Genomic Data
inferred← citeshttps://doi.org/10.1101/2023.07.19.549682openalex-snapshot
Geographic isolation enables recurrent pollinator shifts despite hybridisation in the Cape’s hyperdiverse heathers
inferred← citeshttps://doi.org/10.1101/2024.11.04.621881openalex-snapshot
The historical biogeography of range expansion predicts spatial patterns in reproductive assurance
inferred← citeshttps://doi.org/10.1101/457556openalex-snapshot
Detecting spatial dynamics of range expansions with geo-referenced genomewide SNP data and the geographic spectrum of shared alleles
inferred← citeshttps://doi.org/10.1111/1755-0998.13075openalex-snapshot
When are populations not connected like a circuit? Identifying biases in gene flow from coalescent times
inferred← citeshttps://doi.org/10.1111/brv.12993openalex-snapshot
Interspecific behavioural interference and range dynamics: current insights and future directions
inferred← citeshttps://doi.org/10.1111/btp.13303openalex-snapshot
Patterns in the genetic structure of 49 lowland rain forest tree species co‐distributed on opposite sides of the northern Andes
inferred← citeshttps://doi.org/10.1111/eva.12704openalex-snapshot
Population history provides foundational knowledge for utilizing and developing native plant restoration materials
inferred← citeshttps://doi.org/10.1111/eva.12985openalex-snapshot
Whole‐exome sequencing reveals a long‐term decline in effective population size of red spruce (Picea rubens)
inferred← citeshttps://doi.org/10.1111/jbi.13358openalex-snapshot
Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two eastern North American hickory species
inferred← citeshttps://doi.org/10.1111/jbi.13461openalex-snapshot
Postglacial range expansion shaped the spatial genetic structure in a marine habitat‐forming species: Implications for conservation plans in the Eastern Adriatic Sea
inferred← citeshttps://doi.org/10.1111/jbi.14231openalex-snapshot
Genomic footprints of Quaternary colonization and population expansion in the Patagonian‐Fuegian region rules out a separate southern refugium in Tierra del Fuego
inferred← citeshttps://doi.org/10.1111/jbi.14478openalex-snapshot
Population dynamics of Amazonian floodplain forest species support spatial variation on genetic diversity but not range expansions through time
inferred← citeshttps://doi.org/10.1111/jbi.14481openalex-snapshot
Comparative phylogeography in the genomic age: Opportunities and challenges
inferred← citeshttps://doi.org/10.1111/jbi.14492openalex-snapshot
Inferring past refugia and range dynamics through the integration of fossil, niche modelling and genomic data
inferred← citeshttps://doi.org/10.1111/mec.15316openalex-snapshot
An explicit test of Pleistocene survival in peripheral versus nunatak refugia in two high mountain plant species
inferred← citeshttps://doi.org/10.1111/mec.15655openalex-snapshot
Dispersal barriers and opportunities drive multiple levels of phylogeographic concordance in the Southern Alps of New Zealand
inferred← citeshttps://doi.org/10.1111/mec.17505openalex-snapshot
Pollinator shifts despite hybridisation in the Cape's hyperdiverse heathers (Erica, Ericaceae)
inferred← citeshttps://doi.org/10.1111/nph.71293openalex-snapshot
Spatial inference of ancestor locations suggests northern refugia for canopy‐forming kelps in the Pacific Northwest
inferred← citeshttps://doi.org/10.1111/nph.71443openalex-snapshot
Cross‐ploidy hybridisation in Alpine woodrushes is associated with ecological additivity and scale‐dependent niche divergence
inferred← citeshttps://doi.org/10.32942/x2gc7dopenalex-snapshot
Interspecific behavioural interference and range dynamics: current insights and future directions
inferred← citeshttps://doi.org/10.3389/fevo.2022.765977openalex-snapshot
Deep Genomic Divergence and Phenotypic Admixture of the Treefrog Dendropsophus elegans (Hylidae: Amphibia) Coincide With Riverine Boundaries at the Brazilian Atlantic Forest
inferred← citeshttps://doi.org/10.64898/2026.01.09.698529openalex-snapshot
Spatial inference of ancestor locations suggests northern refugia for canopy-forming kelps in the Northeast Pacific
inferred← citeshttps://doi.org/10.64898/2026.02.26.708247openalex-snapshot
Cross-ploidy hybridisation in Alpine woodrushes is associated with ecological additivity and scale-dependent niche divergence
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