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Parasites, niche modification and the host microbiome: A field survey of multiple parasites

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ecy.1472openalex-snapshot

Forest area and connectivity influence root‐associated fungal communities in a fragmented landscape

inferredcites →https://doi.org/10.1007/s00248-016-0777-xopenalex-snapshot

Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides

inferredcites →https://doi.org/10.1007/s10393-011-0718-6openalex-snapshot

Bridging Taxonomic and Disciplinary Divides in Infectious Disease

inferredcites →https://doi.org/10.1007/s11103-015-0412-0openalex-snapshot

Fungal endophytes: modifiers of plant disease

inferredcites →https://doi.org/10.1016/b978-0-12-372180-8.50042-1openalex-snapshot

AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

inferredcites →https://doi.org/10.1016/j.cell.2016.08.007openalex-snapshot

Toward Accurate and Quantitative Comparative Metagenomics

inferredcites →https://doi.org/10.1016/j.cub.2018.05.085openalex-snapshot

Nutrient- and Dose-Dependent Microbiome-Mediated Protection against a Plant Pathogen

inferredcites →https://doi.org/10.1016/j.funeco.2015.06.006openalex-snapshot

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

inferredcites →https://doi.org/10.1016/j.mib.2013.03.009openalex-snapshot

Disruption of the gut microbiome as a risk factor for microbial infections

inferredcites →https://doi.org/10.1016/j.vetmic.2014.01.007openalex-snapshot

Two necrotic enteritis predisposing factors, dietary fishmeal and Eimeria infection, induce large changes in the caecal microbiota of broiler chickens

inferredcites →https://doi.org/10.1016/j.ympev.2006.07.012openalex-snapshot

Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages

inferredcites →https://doi.org/10.1038/ismej.2008.44openalex-snapshot

The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity

inferredcites →https://doi.org/10.1038/nature11237openalex-snapshot

Defining the core Arabidopsis thaliana root microbiome

inferredcites →https://doi.org/10.1038/nmeth.2634openalex-snapshot

Practical innovations for high-throughput amplicon sequencing

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/nrg3182openalex-snapshot

The human microbiome: at the interface of health and disease

inferredcites →https://doi.org/10.1038/s41467-020-15633-xopenalex-snapshot

A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition

inferredcites →https://doi.org/10.1038/s41564-018-0278-4openalex-snapshot

The role of the microbiota in infectious diseases

inferredcites →https://doi.org/10.1038/s41598-018-37208-zopenalex-snapshot

Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome

inferredcites →https://doi.org/10.1046/j.1365-2486.2003.00602.xopenalex-snapshot

Effects of elevated CO2, nitrogen deposition, and decreased species diversity on foliar fungal plant disease

inferredcites →https://doi.org/10.1046/j.1461-0248.2001.00230.xopenalex-snapshot

Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness

inferredcites →https://doi.org/10.1073/pnas.0707221105openalex-snapshot

Ecological rules governing helminth–microparasite coinfection

inferredcites →https://doi.org/10.1073/pnas.1117018109openalex-snapshot

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

inferredcites →https://doi.org/10.1073/pnas.1315179111openalex-snapshot

Functional traits explain variation in plant life history strategies

inferredcites →https://doi.org/10.1073/pnas.1412752111openalex-snapshot

The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection

inferredcites →https://doi.org/10.1073/pnas.2533483100openalex-snapshot

Fungal endophytes limit pathogen damage in a tropical tree

inferredcites →https://doi.org/10.1080/15572536.2007.11832578openalex-snapshot

Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR

inferredcites →https://doi.org/10.1086/703485openalex-snapshot

Ecological and Evolutionary Stabilities of Biotrophism, Necrotrophism, and Saprotrophism

inferredcites →https://doi.org/10.1093/bioinformatics/btw808openalex-snapshot

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

inferredcites →https://doi.org/10.1093/femsre/fuw017openalex-snapshot

Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

inferredcites →https://doi.org/10.1098/rsbl.2016.0324openalex-snapshot

Independent origins of parasitism in Animalia

inferredcites →https://doi.org/10.1098/rspb.2017.1340openalex-snapshot

A multivariate test of disease risk reveals conditions leading to disease amplification

inferredcites →https://doi.org/10.1098/rspb.2018.2075openalex-snapshot

A host immune hormone modifies parasite species interactions and epidemics: insights from a field manipulation

inferredcites →https://doi.org/10.1098/rstb.2014.0301openalex-snapshot

Within-host competitive interactions as a mechanism for the maintenance of parasite diversity

inferredcites →https://doi.org/10.1098/rstb.2016.0094openalex-snapshot

Growth rate, transmission mode and virulence in human pathogens

inferredcites →https://doi.org/10.1111/1365-2435.12951openalex-snapshot

Differential host responses to parasitism shape divergent fitness costs of infection

inferredcites →https://doi.org/10.1111/1365-2656.12708openalex-snapshot

Parasite–microbiota interactions potentially affect intestinal communities in wild mammals

inferredcites →https://doi.org/10.1111/2041-210x.13159openalex-snapshot

I can see clearly now: Reinterpreting statistical significance

inferredcites →https://doi.org/10.1111/2041-210x.13331openalex-snapshot

The handbook for standardized field and laboratory measurements in terrestrial climate change experiments and observational studies (ClimEx)

inferredcites →https://doi.org/10.1111/brv.12570openalex-snapshot

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

inferredcites →https://doi.org/10.1111/ele.12796openalex-snapshot

Functional traits explain ecosystem function through opposing mechanisms

inferredcites →https://doi.org/10.1111/ele.12825openalex-snapshot

Interactions among symbionts operate across scales to influence parasite epidemics

inferredcites →https://doi.org/10.1111/ele.13176openalex-snapshot

Past is prologue: host community assembly and the risk of infectious disease over time

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05110.xopenalex-snapshot

Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences

inferredcites →https://doi.org/10.1111/j.1461-0248.2011.01663.xopenalex-snapshot

Community assembly: alternative stable states or alternative transient states?

inferredcites →https://doi.org/10.1111/j.2006.0030-1299.14714.xopenalex-snapshot

Entropy and diversity

inferredcites →https://doi.org/10.1111/mec.12481openalex-snapshot

Towards a unified paradigm for sequence‐based identification of fungi

inferredcites →https://doi.org/10.1111/mec.13018openalex-snapshot

Relocation, high‐latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

inferredcites →https://doi.org/10.1111/nph.13742openalex-snapshot

Common foliar fungi of Populus trichocarpa modify Melampsora rust disease severity

inferredcites →https://doi.org/10.1126/science.1187703openalex-snapshot

Exploitation of the Intestinal Microflora by the Parasitic Nematode Trichuris muris

inferredcites →https://doi.org/10.1126/science.aad2602openalex-snapshot

The ecology of the microbiome: Networks, competition, and stability

inferredcites →https://doi.org/10.1128/aem.02894-13openalex-snapshot

From Genus to Phylum: Large-Subunit and Internal Transcribed Spacer rRNA Operon Regions Show Similar Classification Accuracies Influenced by Database Composition

inferredcites →https://doi.org/10.1128/iai.00006-09openalex-snapshot

Prolonged Impact of Antibiotics on Intestinal Microbial Ecology and Susceptibility to Enteric Salmonella Infection

inferredcites →https://doi.org/10.1128/iai.00141-12openalex-snapshot

Alterations in the Porcine Colon Microbiota Induced by the Gastrointestinal Nematode Trichuris suis

inferredcites →https://doi.org/10.1128/iai.01432-07openalex-snapshot

Enteric Salmonellosis Disrupts the Microbial Ecology of the Murine Gastrointestinal Tract

inferredcites →https://doi.org/10.1128/mra.00328-19openalex-snapshot

T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees

inferredcites →https://doi.org/10.1128/msystems.00201-17openalex-snapshot

Microbial Eukaryotes: a Missing Link in Gut Microbiome Studies

inferredcites →https://doi.org/10.1146/annurev-ecolsys-110411-160340openalex-snapshot

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

inferredcites →https://doi.org/10.1146/annurev-phyto-080417-050028openalex-snapshot

Functional Ecology of Forest Disease

inferredcites →https://doi.org/10.1146/annurev-phyto-080508-081831openalex-snapshot

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

inferredcites →https://doi.org/10.1146/annurev-phyto-081211-172908openalex-snapshot

Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria

inferredcites →https://doi.org/10.1146/annurev.phyto.43.040204.135923openalex-snapshot

Contrasting Mechanisms of Defense Against Biotrophic and Necrotrophic Pathogens

inferredcites →https://doi.org/10.1186/s12859-016-1441-7openalex-snapshot

Negative binomial mixed models for analyzing microbiome count data

inferredcites →https://doi.org/10.1186/s12864-016-2684-4openalex-snapshot

The host-pathogen interaction between wheat and yellow rust induces temporally coordinated waves of gene expression

inferredcites →https://doi.org/10.1186/s40168-017-0237-yopenalex-snapshot

Normalization and microbial differential abundance strategies depend upon data characteristics

inferredcites →https://doi.org/10.1371/journal.pbio.2004108openalex-snapshot

Rapid environmental effects on gut nematode susceptibility in rewilded mice

inferredcites →https://doi.org/10.1371/journal.pcbi.1008473openalex-snapshot

A joint modeling approach for longitudinal microbiome data improves ability to detect microbiome associations with disease

inferredcites →https://doi.org/10.1371/journal.pntd.0002880openalex-snapshot

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota

inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

inferredcites →https://doi.org/10.1371/journal.pone.0090234openalex-snapshot

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

inferredcites →https://doi.org/10.1371/journal.pone.0177145openalex-snapshot

Microbiomes associated with infective stages of root-knot and lesion nematodes in soil

inferredcites →https://doi.org/10.1371/journal.pone.0186546openalex-snapshot

A polyphenol-enriched diet and Ascaris suum infection modulate mucosal immune responses and gut microbiota composition in pigs

inferredcites →https://doi.org/10.1371/journal.pone.0204195openalex-snapshot

Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.1515/9780691187051-017openalex-snapshot

Monographs in Population Biology

inferredcites →https://doi.org/10.1890/0012-9658(2002)083[1713:eogpsd]2.0.co;2openalex-snapshot

EFFECTS OF GRASSLAND PLANT SPECIES DIVERSITY, ABUNDANCE, AND COMPOSITION ON FOLIAR FUNGAL DISEASE

inferredcites →https://doi.org/10.2307/1310784openalex-snapshot

Alteration of North American Streams by Beaver

inferredcites →https://doi.org/10.2307/1934352openalex-snapshot

Diversity and Evenness: A Unifying Notation and Its Consequences

inferredcites →https://doi.org/10.2307/2260026openalex-snapshot

Evolution from Molecules to Men.

inferredcites →https://doi.org/10.2307/3545850openalex-snapshot

Organisms as Ecosystem Engineers

inferredcites →https://doi.org/10.32614/cran.package.emmeansopenalex-snapshot

emmeans: Estimated Marginal Means, aka Least-Squares Means

inferredcites →https://doi.org/10.32614/cran.package.nlmeopenalex-snapshot

nlme: Linear and Nonlinear Mixed Effects Models

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3389/fmicb.2015.00869openalex-snapshot

Microbiomes: unifying animal and plant systems through the lens of community ecology theory

inferredcites →https://doi.org/10.3389/fmicb.2016.00455openalex-snapshot

Gut Microbiota Diversity and Human Diseases: Should We Reintroduce Key Predators in Our Ecosystem?

inferredcites →https://doi.org/10.3852/10-262openalex-snapshot

DNA-based detection of the fungal pathogen Geomyces destructans in soils from bat hibernacula

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4781016openalex-extracted

Slipping Through the Cracks: Challenges and Prospects for Managing Fungal Pathogens Involved in Plant Disease Complexes

inferred← citeshttps://doi.org/10.1002/ece3.8283openalex-snapshot

The soil microbiome increases plant survival and modifies interactions with root endosymbionts in the field

inferred← citeshttps://doi.org/10.1007/s11104-025-07291-zopenalex-snapshot

Priority effects of inoculation timing of plant growth-promoting microbial inoculants: role, mechanisms and perspectives

inferred← citeshttps://doi.org/10.1016/j.cropro.2024.106826openalex-snapshot

Slipping through the cracks: Challenges and prospects for investigating fungal plant disease complexes

inferred← citeshttps://doi.org/10.1038/s41579-021-00604-wopenalex-snapshot

Priority effects in microbiome assembly

inferred← citeshttps://doi.org/10.1098/rspb.2023.1486openalex-snapshot

The first arriving virus shapes within-host viral diversity during natural epidemics

inferred← citeshttps://doi.org/10.1098/rstb.2025.0120openalex-snapshot

Pathogen community assembly in a host population is associated with interannual variation in seasonal environmental conditions

inferred← citeshttps://doi.org/10.1101/2024.10.08.617235openalex-snapshot

Amplification of disease by nutrient addition: Testing mechanisms from individual to community levels

inferred← citeshttps://doi.org/10.1111/1462-2920.16533openalex-snapshot

Microbial communities are indicators of parasite infection status

inferred← citeshttps://doi.org/10.1111/1758-2229.70392openalex-snapshot

Hidden Microbiota Inhabiting in Pollen Reserves of Honey Bee ( Apis mellifera ) From Amazonas Region Revealed by DNA Metabarcoding

inferred← citeshttps://doi.org/10.1111/mec.70255openalex-snapshot

Shaped by Fire: Unravelling the Impact of Fire on Lizard Gut Microbiome

inferred← citeshttps://doi.org/10.1186/s12866-023-03154-8openalex-snapshot

Interactions between Balantidium ctenopharyngodoni and microbiota reveal its low pathogenicity in the hindgut of grass carp

inferred← citeshttps://doi.org/10.1371/journal.pone.0341614openalex-snapshot

Phyllosphere microbial communities are modulated by pathogen coinfection, but not a plant defense hormone

inferred← citeshttps://doi.org/10.17216/limnofish.1270081openalex-snapshot

First report of leech parasitism in freshwater turtles for Turkish wetlands

inferred← citeshttps://doi.org/10.20944/preprints202312.1796.v1openalex-snapshot

What Metagenomics Reveals of Microbial Populations in a Host-Parasite Relationship Between Alpine Goats and Haemonchus contortus

inferred← citeshttps://doi.org/10.25422/azu.data.26961865openalex-snapshot

Amplification of disease by nutrient addition- Testing mechanisms from individual to community levels

inferred← citeshttps://doi.org/10.3389/fmicb.2022.824211openalex-snapshot

A Microbial Mutualist Within Host Individuals Increases Parasite Transmission Between Host Individuals: Evidence From a Field Mesocosm Experiment

inferred← citeshttps://doi.org/10.3389/fmicb.2024.1429166openalex-snapshot

Leaf age structures phyllosphere microbial communities in the field and greenhouse

inferred← citeshttps://doi.org/10.3390/fishes9030097openalex-snapshot

Farmed Chinese Perch (Siniperca chuatsi) Coinfected with Parasites and Oomycete Pathogens

inferred← citeshttps://doi.org/10.4236/ajmb.2025.154021openalex-snapshot

Microbiome as a Diagnostic Tool: Identifying Resistance to Haemonchus contortus in Goats through Metagenomic Profiling

inferred← citeshttps://doi.org/10.6084/m9.figshare.26659963openalex-snapshot

Additional file 1 of Interactions between Balantidium ctenopharyngodoni and microbiota reveal its low pathogenicity in the hindgut of grass carp

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