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Genetic Estimates of Relatedness: Established Practices and New Opportunities Through Low Coverage Whole‐Genome Sequencing

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajp.22235openalex-snapshot

An empirical comparison of short tandem repeats (STRs) and single nucleotide polymorphisms (SNPs) for relatedness estimation in Chinese rhesus macaques (Macaca mulatta)

inferredcites →https://doi.org/10.1002/ajp.22424openalex-snapshot

Genetic studies on the Cayo Santiago rhesus macaques: A review of 40 years of research

inferredcites →https://doi.org/10.1002/ece3.2346openalex-snapshot

Strategies for determining kinship in wild populations using genetic data

inferredcites →https://doi.org/10.1002/ece3.4905openalex-snapshot

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation

inferredcites →https://doi.org/10.1002/ece3.71273openalex-snapshot

Development of a Genotyping‐in‐Thousands by Sequencing ( GT ‐Seq) Panel for Identifying Individuals and Estimating Relatedness Among Alaska Black Bears ( Ursus americanus )

inferredcites →https://doi.org/10.1007/978-3-0348-8948-3_4openalex-snapshot

The use of microsatellites for genetic analysis of natural populations — a critical review

inferredcites →https://doi.org/10.1007/bf00167954openalex-snapshot

Sperm competition in horseshoe crabs ( Limulus polyphemus )

inferredcites →https://doi.org/10.1016/j.ajhg.2011.01.010openalex-snapshot

A Fast, Powerful Method for Detecting Identity by Descent

inferredcites →https://doi.org/10.1016/j.ajhg.2020.02.012openalex-snapshot

Rapid, Phase-free Detection of Long Identity-by-Descent Segments Enables Effective Relationship Classification

inferredcites →https://doi.org/10.1016/j.anbehav.2007.08.027openalex-snapshot

Can't get there from here: inferring kinship from pairwise genetic relatedness

inferredcites →https://doi.org/10.1016/j.patter.2025.101318openalex-snapshot

ASReview LAB v.2: Open-source text screening with multiple agents and a crowd of experts

inferredcites →https://doi.org/10.1017/s0016672300033620openalex-snapshot

Estimators for pairwise relatedness and individual inbreeding coefficients

inferredcites →https://doi.org/10.1017/s0016672307008798openalex-snapshot

Triadic IBD coefficients and applications to estimating pairwise relatedness

inferredcites →https://doi.org/10.1038/ncomms14115openalex-snapshot

Archaeogenomic evidence reveals prehistoric matrilineal dynasty

inferredcites →https://doi.org/10.1038/nrg1249openalex-snapshot

The evolution of molecular markers — just a matter of fashion?

inferredcites →https://doi.org/10.1038/nrg3821openalex-snapshot

Relatedness in the post-genomic era: is it still useful?

inferredcites →https://doi.org/10.1038/sj.hdy.6800545openalex-snapshot

Microsatellite null alleles in parentage analysis

inferredcites →https://doi.org/10.1038/sj.hdy.6800865openalex-snapshot

Estimating relatedness and relationships using microsatellite loci with null alleles

inferredcites →https://doi.org/10.1046/j.1365-294x.2001.01288.xopenalex-snapshot

A comparison of microsatellite‐based pairwise relatedness estimators

inferredcites →https://doi.org/10.1073/pnas.0611449104openalex-snapshot

The limited impact of kinship on cooperation in wild chimpanzees

inferredcites →https://doi.org/10.1073/pnas.2401106122openalex-snapshot

Estimating realized relatedness in free-ranging macaques by inferring identity-by-descent segments

inferredcites →https://doi.org/10.1086/519795openalex-snapshot

PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btv509openalex-snapshot

NgsRelate: a software tool for estimating pairwise relatedness from next-generation sequencing data

inferredcites →https://doi.org/10.1093/genetics/152.4.1753openalex-snapshot

Estimation of Pairwise Relatedness With Molecular Markers

inferredcites →https://doi.org/10.1093/genetics/160.3.1203openalex-snapshot

An Estimator for Pairwise Relatedness Using Molecular Markers

inferredcites →https://doi.org/10.1093/genetics/163.3.1153openalex-snapshot

Maximum-Likelihood Estimation of Relatedness

inferredcites →https://doi.org/10.1093/molbev/msj065openalex-snapshot

Quantifying Ascertainment Bias and Species-Specific Length Differences in Human and Chimpanzee Microsatellites Using Genome Sequences

inferredcites →https://doi.org/10.1093/nar/24.16.3189openalex-snapshot

Reliable genotyping of samples with very low DNA quantities using PCR

inferredcites →https://doi.org/10.1098/rspb.2007.1531openalex-snapshot

Wild pedigrees: the way forward

inferredcites →https://doi.org/10.1101/023374openalex-snapshot

Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data

inferredcites →https://doi.org/10.1101/gr.276728.122openalex-snapshot

Three assays for in-solution enrichment of ancient human DNA at more than a million SNPs

inferredcites →https://doi.org/10.1111/1755-0998.12323openalex-snapshot

related: an R package for analysing pairwise relatedness from codominant molecular markers

inferredcites →https://doi.org/10.1111/1755-0998.13854openalex-snapshot

Best practices for genotype imputation from low‐coverage sequencing data in natural populations

inferredcites →https://doi.org/10.1111/mec.12276openalex-snapshot

RAD seq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

inferredcites →https://doi.org/10.1111/mec.14988openalex-snapshot

The future of parentage analysis: From microsatellites to SNPs and beyond

inferredcites →https://doi.org/10.1126/science.1089402openalex-snapshot

Kin Discrimination and the Benefit of Helping in Cooperatively Breeding Vertebrates

inferredcites →https://doi.org/10.1126/science.abc6617openalex-snapshot

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

inferredcites →https://doi.org/10.1126/science.abn7829openalex-snapshot

A global catalog of whole-genome diversity from 233 primate species

inferredcites →https://doi.org/10.1126/science.adf6218openalex-snapshot

Community-wide genome sequencing reveals 30 years of Darwin’s finch evolution

inferredcites →https://doi.org/10.1136/bmj.n71openalex-snapshot

The PRISMA 2020 statement: an updated guideline for reporting systematic reviews

inferredcites →https://doi.org/10.1159/000154113openalex-snapshot

Similarity of DNA Fingerprints Due to Chance and Relatedness

inferredcites →https://doi.org/10.1159/000156548openalex-snapshot

Male Mating Behaviour and Paternity Discrimination by DNA Fingerprinting in a Japanese Macaque Group

inferredcites →https://doi.org/10.1371/journal.pgen.0020041openalex-snapshot

Assumption-Free Estimation of Heritability from Genome-Wide Identity-by-Descent Sharing between Full Siblings

inferredcites →https://doi.org/10.1371/journal.pgen.1004144openalex-snapshot

Relationship Estimation from Whole-Genome Sequence Data

inferredcites →https://doi.org/10.1371/journal.pgen.1006911openalex-snapshot

Deconstructing isolation-by-distance: The genomic consequences of limited dispersal

inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

inferredcites →https://doi.org/10.1371/journal.pone.0047618openalex-snapshot

Detecting Identity by Descent and Homozygosity Mapping in Whole-Exome Sequencing Data

inferredcites →https://doi.org/10.1371/journal.pone.0161333openalex-snapshot

Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies

inferredcites →https://doi.org/10.1371/journal.pone.0168374openalex-snapshot

Exploring Identity-By-Descent Segments and Putative Functions Using Different Foundation Parents in Maize

inferredcites →https://doi.org/10.1371/journal.pone.0195491openalex-snapshot

Estimating genetic kin relationships in prehistoric populations

inferredcites →https://doi.org/10.1371/journal.ppat.1010993openalex-snapshot

Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis

inferredcites →https://doi.org/10.1534/genetics.106.057331openalex-snapshot

Performance of Marker-Based Relatedness Estimators in Natural Populations of Outbred Vertebrates

inferredcites →https://doi.org/10.1534/genetics.116.187492openalex-snapshot

Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples

inferredcites →https://doi.org/10.18637/jss.v064.i03openalex-snapshot

Exploring Diallelic Genetic Markers: The HardyWeinberg Package

inferredcites →https://doi.org/10.21105/joss.07916openalex-snapshot

BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data

inferredcites →https://doi.org/10.3389/fgene.2014.00432openalex-snapshot

Parentage assignment with genomic markers: a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals

inferredcites →https://doi.org/10.3389/fgene.2021.722602openalex-snapshot

Current Developments in Detection of Identity-by-Descent Methods and Applications

inferredcites →https://doi.org/10.3390/genes14030743openalex-snapshot

Past Connectivity but Recent Inbreeding in Cross River Gorillas Determined Using Whole Genomes from Single Hairs

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.20139046zenodo-depositor-declared

Systematic literature review of studies applying genetic relatedness estimation

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.